Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla09g00820 | ATGGCCCAACGGTCACATGTACCAGCATTTGGAAATTGGGAAAGCGAAGGGAATGTTCCATACACAGTGTTCTTTGACAAGGCGAGAAAGGGCAGAGGCGGGGGACCAATCAGAAACCCAAACGATCCAGAGGAATATCCAGAAATGGTTATGGACAACTCACATGAAGCTGCTCCAACCAAATCCAATCCTAAGGATGACACTCCACCACCCAAACCAACGACCCATGAGAGGAGGCATAGTCGAGAAGACGCTGGCTTACGCCCCTATGCCAACCCTCCTGCCAACCGTGAAAATCCCGCTCGGAGACAGAGCGGCTCCGAATATAGCATCGACCGCTCTCCTCTCCATCGCCAGGCAAAGCCCTCGGGAAGAGACAGCCCGGTGACGGAGGGCAAGAGCTTTGAGGGTGCCTATGGCAACCGTGGGAAGACTAGAATGAAGAACGATGCTGCGCCGGAAGGGACGGCCGTGCCGAAGTTTGGGTCATGGGATGTGAACAATCCGGCATCGGCCGACGGTTTTACACACATTTTTGGTAAAGTTCGAGAGGAAAGGATGGGGCCGGGAACCCCGCCGCCGCAGCATTCTTCTTCACCTTACAACAATGTTAATAATGGAAGACCCCACGACAGTGCCAAGAATTCAAAGACCCTCTCCTCTCCTCATCACCAATCTGCATCCACCAAAGGATTTTACTCTGCAGATTGGATTATATCTGACAATTCAGCCTCCATCTCACCGCATAGACAAAGCGAAATCCCTCTCTTTTTCTCTCTTCCACTTTCAGAATTCAAGAATTACACTGTTTTCTTCTCCATATTTGGTGCTTTATGCATTCTGGTGGCATTCAAGAAGCTAATTCGGTTAGTATTTGATGCGAATTTGAAATTCTTATCTGGGTTTTCCGAGTTCTGTACTGGGATTTTGTTTCCGTTTGTTTCTGGATGTTTGATTGAAGGGATTATGGTGAGGGAACAACGAATTGAATCGTTTTACACTAAACTTCGTGACTCAGTCACGACTTCTTCTTTGTCGCCTCTCCTTATTTTTCCTTCCACTTCTGATGTAGACTCGCTTTGTGCCTTGAAAATTATTTTTAAAGTTCTTGAATCTGATTCTGTTCGATACGCTTGTTACCCTGTGTCTTCTTTTCAAGAAATTCATAAATATGCTGGTCCTAGTTTGACTTCCTCGTCTGATGATCCGATTTCCATTCTTTTGATTAATTGGGGATGTCATCGAGATCTTAGGAAGGTTTTGAGTTTAGGTCCAGCTGCTCGTGTGTTTGTTGTTGATAGTCATCGCCCAATTCATCTTCATAATTTGAGTAGTGAGAATGAACAAGTGGTTGTGCTTTATACCAAAGACGACGAGCTCCAGGCCGATTTGGCTTATGATTTTGACGTCTCCGCTTTGGCAAATGCGAGTGATTTGAACAGCGACGATGAGATTGATGACGCATTGGATAGCGATGACGACAATGATAGTGAAAGCGACGAAGAAGGCAGGCGTGGGTCGAGGAAAAGGAGGAAAGTTGATAAGGAAAATGAAGAGGATCCTGTTCAGCTTTATAGGAAATTGAAAAGGGGATATTATCAAATGGGTACCTTCCATGGTAGGCCTTCAGGGTGTTTGATGTATGATCTGTCTCATTCGTTGAGGAAGAACACGAATGAATTACTATGGCTGGCTTGTGTGTCTTTAACAGATCAGTTTGTACATGAAAGATTGACGGATGAGAGGTACCAAGCTGGGGTTATGGAGCTCGAACAACACATCAACAGTTCAGGGAACTTGAATGCTGTTAACTCTGTTACTCTTAAAGATGGTACCAAGATCCGAGCCCCTGATGCATCTAGAATCACTTATGATGATGAACCCAGATTAATGCTCTTGCAGGAGTGGAATTTGTTTGATTCAATGCTGTGTTCTTCATATATTGCAACCAAGTTAAAGACATGGAGTGACAATGGAATGAAGAAGCTCAAGTTGCTTCTAGCACGCATGGGTTTTGCACTTGTGGATTGCCAACAAAAGTTCCAATACATGAATATCGAAGTGAAACGAAAGATGAAGGATGAATTTGAGCGATACCTTCCTGAATACGGCCTAACCGATTTCTACTATAGAAGTTTCTTGAGGTTACATGGTTATAGCTCAAAAGTGTCAGCAGCAGATGTGGTATATGGGGTCACTGCATTGCTTGAGTCCTTTGTCAAATCGGATGGTTCCAGTGCTTCCAAGCAGTTCGGAGTGGCTTATGATGCATTGTCATTGAACAATCTTGATAAGCTCAAAGCTGGAATGCAGCAGGCGATCAAGGTCCAGAGATCAATTCTTAGACAGGGGAGCTCTGCAATTACAAAGAGTGGTTGTATAAGAAGTGGGAGAAAATTTCGTTGGGTGAAGCTTGAAGATTCTGTAGACACCCAATTGTTGGGGTATCCTCAAGCACTCACTAAATTCTGCTACTTTATAATGGATGCTTTGCGAGAGAGAGGAGCCAGAATGAAGCCTTTGCTATGTGCTTGCTTATCACAAGAGCCCAACAAAGTACTGATCGTTGGAGTTTGTGGGAAGCCTAGGCTCGGGGCATCTCAAGGCAATGCATTTGGGAGAGCTTTTCGAGACGCGGCGGAGGAAATGAGCTCGGAGTTTTTCCACGAGATGTTTGAATCTTCATGGATTCTTATTGAAAAAACTTCAGTCAACTCTTTCATGGTTAGATTGACTCAGAAGCTCTAA | 2748 | 44.65 | MAQRSHVPAFGNWESEGNVPYTVFFDKARKGRGGGPIRNPNDPEEYPEMVMDNSHEAAPTKSNPKDDTPPPKPTTHERRHSREDAGLRPYANPPANRENPARRQSGSEYSIDRSPLHRQAKPSGRDSPVTEGKSFEGAYGNRGKTRMKNDAAPEGTAVPKFGSWDVNNPASADGFTHIFGKVREERMGPGTPPPQHSSSPYNNVNNGRPHDSAKNSKTLSSPHHQSASTKGFYSADWIISDNSASISPHRQSEIPLFFSLPLSEFKNYTVFFSIFGALCILVAFKKLIRLVFDANLKFLSGFSEFCTGILFPFVSGCLIEGIMVREQRIESFYTKLRDSVTTSSLSPLLIFPSTSDVDSLCALKIIFKVLESDSVRYACYPVSSFQEIHKYAGPSLTSSSDDPISILLINWGCHRDLRKVLSLGPAARVFVVDSHRPIHLHNLSSENEQVVVLYTKDDELQADLAYDFDVSALANASDLNSDDEIDDALDSDDDNDSESDEEGRRGSRKRRKVDKENEEDPVQLYRKLKRGYYQMGTFHGRPSGCLMYDLSHSLRKNTNELLWLACVSLTDQFVHERLTDERYQAGVMELEQHINSSGNLNAVNSVTLKDGTKIRAPDASRITYDDEPRLMLLQEWNLFDSMLCSSYIATKLKTWSDNGMKKLKLLLARMGFALVDCQQKFQYMNIEVKRKMKDEFERYLPEYGLTDFYYRSFLRLHGYSSKVSAADVVYGVTALLESFVKSDGSSASKQFGVAYDALSLNNLDKLKAGMQQAIKVQRSILRQGSSAITKSGCIRSGRKFRWVKLEDSVDTQLLGYPQALTKFCYFIMDALRERGARMKPLLCACLSQEPNKVLIVGVCGKPRLGASQGNAFGRAFRDAAEEMSSEFFHEMFESSWILIEKTSVNSFMVRLTQKL | 915 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 8400406 | 8410615 | - | ClCG09G008800.2 | Cla09g00820 | 280240 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla09g00820 | 915 | MobiDBLite | consensus disorder prediction | 197 | 228 | - | - | |
| Cla09g00820 | 915 | MobiDBLite | consensus disorder prediction | 70 | 86 | - | - | |
| Cla09g00820 | 915 | Pfam | Cleavage site for pathogenic type III effector avirulence factor Avr | 154 | 186 | IPR008700 | - | |
| Cla09g00820 | 915 | MobiDBLite | consensus disorder prediction | 481 | 499 | - | - | |
| Cla09g00820 | 915 | MobiDBLite | consensus disorder prediction | 481 | 521 | - | - | |
| Cla09g00820 | 915 | MobiDBLite | consensus disorder prediction | 500 | 521 | - | - | |
| Cla09g00820 | 915 | PANTHER | - | 323 | 915 | - | - | |
| Cla09g00820 | 915 | MobiDBLite | consensus disorder prediction | 98 | 112 | - | - | |
| Cla09g00820 | 915 | PANTHER | CDC45-RELATED PROTEIN | 323 | 915 | IPR003874 | GO:0006270 | |
| Cla09g00820 | 915 | MobiDBLite | consensus disorder prediction | 27 | 166 | - | - | |
| Cla09g00820 | 915 | Pfam | CDC45-like protein | 349 | 739 | IPR003874 | GO:0006270 | |
| Cla09g00820 | 915 | Pfam | CDC45-like protein | 742 | 914 | IPR003874 | GO:0006270 | |
| Cla09g00820 | 915 | MobiDBLite | consensus disorder prediction | 184 | 228 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla05g00337 | Cla-Chr5:3057965 | Cla09g00820 | Cla-Chr9:8400406 | 1.02E-08 | dispersed | |
| Cla01g00986 | Cla-Chr1:14366553 | Cla09g00820 | Cla-Chr9:8400406 | 3.72E-23 | transposed | |
| Cla02g00892 | Cla-Chr2:12697563 | Cla09g00820 | Cla-Chr9:8400406 | 2.04E-08 | transposed | |
| Cla03g00323 | Cla-Chr3:3842557 | Cla09g00820 | Cla-Chr9:8400406 | 3.67E-09 | transposed | |
| Cla05g01363 | Cla-Chr5:18021148 | Cla09g00820 | Cla-Chr9:8400406 | 9.64E-11 | transposed | |
| Cla05g02625 | Cla-Chr5:37443255 | Cla09g00820 | Cla-Chr9:8400406 | 3.69E-08 | transposed | |
| Cla09g02084 | Cla-Chr9:38391575 | Cla09g00820 | Cla-Chr9:8400406 | 1.82E-09 | transposed | |
| Cla10g00416 | Cla-Chr10:5593183 | Cla09g00820 | Cla-Chr9:8400406 | 8.25E-11 | transposed | |
| Cla07g00193 | Cla-Chr7:2138922 | Cla09g00820 | Cla-Chr9:8400406 | 1.20E-06 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla09g00820 | K06628 | - | csv:101221761 | 1081.24 |