Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g00838 ATGGAACTTCATCTCTTGTGGGTTGGCATCTTCCTTTGCTCTGGATTTTGGTCTCTTGCGTTAAGTGATCAAGATGGTTTCCTAAGCTTATCTTGTGGAGCAACTACCACCTTCACTGACTCCTCCAACATTTTATGGATTCCAGACGTCGACTACATCAGCTCCGGTAACGTGTCAATCATCGACAATAACCATGTTCGAATCTTCCCCGACCCCCGAGCGCGAAATTGTTACAAGCTACCACTTAAAAATAGCTCCTCATCAGTTCTCATCAGAGCTGAGTTTGTGTATAAAAACTATGACAAGCTTGGGAAGCCCCCTGCATTCTTTGTTTCTCTTGGGACTGCCATGACTAGCAATGTGAACCTTACTTTTCATGACCCTTGGACTGAGGAGTTTGTATGGCCAGTTAACAAAGAAACTGTCTCCTTTTGTTTACATTCCATTCCTCAAGGTGGCAGCCCTTTGATATCTTCGATCGAACTCCGGCCGCTACCGCGAGGAGCGTACGAAGATGATGGCTTGCTTCAGAGTCAGGCTCTTAGAAAGTCGTATCGAATCAATTGTGGTTATACTAATGGATCTCTCAGGTACCCGATCGATCCATACGACCGAATATGGGACGCTGACCGCAACTTCAAGCCATTTCATGTGTCATCAGGGTTCAAAGTTGAGGCCAACTTTGATATGATAGGAGTGAAGGAAGCTCCACCAGGGGCAATTGTTGAAACAGCAAGAGTTTTGACAAGAAGAGATGAGCTAAGCTACAACCTTCCACTTGAAGAGGAAGAAGGAGATTACTATGTGATTCTTTATTTTGGTGGGATTCTTGCTGTTCATCCTTCATTTGATGTATTGATCAATGGGAGAGTTATAGAATCAAACTACACTTTTGAAAAGGGAGAGATGAGGGCTTTGTATGTCATTCAATACCAAATCAAGACCTTGAATATCACTCTCAAGAGTGTTAAATTCTATCCTCAAATCAATGCTATTGAGGTCTATCAGATTGTTCATATTCCTTTGGAAGCTTCATCAACTACAGTTTCAGCCCTTCAGGTGATTCATCAATCTACTGGTTTGAATTTGGGATGGGAAGATGATCCATGTTCCCCAACAACATGGGATCATGTTGGATGTGAAGGAAACCTTGTTACATCTCTAGAGCTTTCCAACATCAACTTGAGGTCGATCGGCCCGACGTTTGGCGACATTCTCTATCTCAAAATACTGGATTTGCACAACACTTCACTTTCAGGAGAAATACAAAATTTGGGCAGTCTCACTCATCTTCAAAATTTGAACTTGAGTTTCAACAAGCTAACATCATTTGGGTCAGATTTGGAGAACCTTAGCAACCTCAAAATTCTGGACTTGCAGAACAATAGTCTGCAGGGAATTGTTCCAGACAGCTTGGGAGAACTTGAAGATCTTCAATTATTGAATTTGGAGAACAATAGGCTGGAAGGCACCCTCCCATTGTCTTTGAACAAAGGAAGTCTGGAAATTAGAACAATAGGAAACCCTTGTCTGTCATTCTCCACAATGACATGCAATGATGTATCATCAAATCCAGCCATTGAAACACCACAAGTGACAGTTGTTCCTGAGAAGAAGGGGATGAGCAGCAGCCATAATAATACTAACAATCATTTGCCTATCATAATTATTGTTTCTGCAGTTGCTTCAGCTTTGCTACTTCTCATCACTCTCTCCCTTTCACTTCTACTCTACCTGAGAAACCAATCTCAACTCACAACAACTCAACTCACATACTCAACAAAAGCAGCAATGGAGCTAAGGAATTGGAACTCAGCAAGAGTATTCACGTACAAGGAGATAAAGTCAGCTACGAACAACTTCAAGGAAGTGATTGGAAGAGGAAGCTTTGGGTCAGTTTATCTTGGAAAGCTTCCGGATGGAAAACTTGTGGCTGTCAAAGTAAGGTTTGACAAAACCCAACTTGGGACTGACTCCTTTATCAATGAGGTTCACCTTTTGTCTCAAATTCGCCATCAAAATCTTGTTTGTTTGGAAGGATTTTGTAACGAATCCAAACGACAAATACTTGTTTATGAGTATTTACCTGGTGGATCATTGGCTGACCACATATATGGCATGAACAAAAAAAGTGTTTCTCTCAGTTGGATTAGAAGACTCAAAGTTGCTGTTGATGCAGCAAAAGGGTTGGACTACTTACACAATGGAAGTGAGCCAAGAATAATCCACAGAGATGTGAAGTGTAGTAACATTCTTTTGGATATGGAAATGAATGCAAAAGTTTGTGACTTTGGCCTTTCCAAGCAAATTTCACATCCTGATGCAACTCATGTCACCACTGTTGTCAAGGGCACTGCTGGTTATTTGGATCCTGAGTATTATTCCACTCAACAGTTAACTGAAAAGAGCGACGTGTATAGTTTTGGAGTTGTGTTATTGGAGCTTATTTGTGGAAGAGAGCCTTTGAGTCACACAGGAAATCCAGATTCTTTCAACTTGGTGCTATGGGCAAAACCCTACTTACAAGCAGGTGCATTTGAGGTAGTAGATGAAAATTTGAGAGGAAGGTTTGATGTTGAAAGTATGAAAAAGGCAGCTATTGTTGCTATAAGGTGTGTGGAAAGAGATGCTTCTCAAAGGCCTAATATTGCACAAGTTTTGGCAGACCTACGAGATGCTTATGATGCACAGATTGCATATCTTTCTACTTTTCACCATTGA 2721 41.27 MELHLLWVGIFLCSGFWSLALSDQDGFLSLSCGATTTFTDSSNILWIPDVDYISSGNVSIIDNNHVRIFPDPRARNCYKLPLKNSSSSVLIRAEFVYKNYDKLGKPPAFFVSLGTAMTSNVNLTFHDPWTEEFVWPVNKETVSFCLHSIPQGGSPLISSIELRPLPRGAYEDDGLLQSQALRKSYRINCGYTNGSLRYPIDPYDRIWDADRNFKPFHVSSGFKVEANFDMIGVKEAPPGAIVETARVLTRRDELSYNLPLEEEEGDYYVILYFGGILAVHPSFDVLINGRVIESNYTFEKGEMRALYVIQYQIKTLNITLKSVKFYPQINAIEVYQIVHIPLEASSTTVSALQVIHQSTGLNLGWEDDPCSPTTWDHVGCEGNLVTSLELSNINLRSIGPTFGDILYLKILDLHNTSLSGEIQNLGSLTHLQNLNLSFNKLTSFGSDLENLSNLKILDLQNNSLQGIVPDSLGELEDLQLLNLENNRLEGTLPLSLNKGSLEIRTIGNPCLSFSTMTCNDVSSNPAIETPQVTVVPEKKGMSSSHNNTNNHLPIIIIVSAVASALLLLITLSLSLLLYLRNQSQLTTTQLTYSTKAAMELRNWNSARVFTYKEIKSATNNFKEVIGRGSFGSVYLGKLPDGKLVAVKVRFDKTQLGTDSFINEVHLLSQIRHQNLVCLEGFCNESKRQILVYEYLPGGSLADHIYGMNKKSVSLSWIRRLKVAVDAAKGLDYLHNGSEPRIIHRDVKCSNILLDMEMNAKVCDFGLSKQISHPDATHVTTVVKGTAGYLDPEYYSTQQLTEKSDVYSFGVVLLELICGREPLSHTGNPDSFNLVLWAKPYLQAGAFEVVDENLRGRFDVESMKKAAIVAIRCVERDASQRPNIAQVLADLRDAYDAQIAYLSTFHH 906
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 8596011 8606900 - ClCG09G009020.2 Cla09g00838 280258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g00838 906 PANTHER OS07G0107800 PROTEIN-RELATED 10 903 - -
Cla09g00838 906 Gene3D Transferase(Phosphotransferase) domain 1 695 902 - -
Cla09g00838 906 Pfam Protein kinase domain 622 888 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla09g00838 906 SUPERFAMILY Protein kinase-like (PK-like) 601 890 IPR011009 -
Cla09g00838 906 Pfam Leucine rich repeat 430 488 IPR001611 GO:0005515
Cla09g00838 906 Gene3D Ribonuclease Inhibitor 348 531 IPR032675 -
Cla09g00838 906 CDD STKc_IRAK 625 890 - -
Cla09g00838 906 Gene3D - 182 338 - -
Cla09g00838 906 Gene3D Phosphorylase Kinase; domain 1 592 694 - -
Cla09g00838 906 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 10 903 - -
Cla09g00838 906 SUPERFAMILY L domain-like 350 498 - -
Cla09g00838 906 ProSitePatterns Serine/Threonine protein kinases active-site signature. 741 753 IPR008271 GO:0004672|GO:0006468
Cla09g00838 906 ProSitePatterns Protein kinases ATP-binding region signature. 625 647 IPR017441 GO:0005524
Cla09g00838 906 ProSiteProfiles Protein kinase domain profile. 619 901 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla09g00838 906 Pfam Malectin-like domain 30 337 IPR024788 -
Cla09g00838 906 ProSiteProfiles Leucine-rich repeat profile. 430 452 IPR001611 GO:0005515
Cla09g00838 906 SMART LRR_typ_2 451 474 IPR003591 -
Cla09g00838 906 SMART LRR_typ_2 428 450 IPR003591 -
Cla09g00838 906 SMART LRR_typ_2 475 499 IPR003591 -
Cla09g00838 906 SMART serkin_6 619 894 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00944 Cla-Chr3:15756460 Cla09g00838 Cla-Chr9:8596011 3.96E-31 dispersed
Cla09g00838 Cla-Chr9:8596011 Cla10g01958 Cla-Chr10:35410589 5.37E-130 dispersed
Cla09g00838 Cla-Chr9:8596011 Cla05g02627 Cla-Chr5:37465029 3.07E-124 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80800 PF12819 Malectin_like 9.40E-52 CL0202 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g00838 - - csv:101203637 1571.21