Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g00842 ATGAAGGGAAGAAAATGTTTGGAAATTGAAGATATATACTTAAACAAAAGGCAACAACATCATCCTCCACAATTAAACATCACCCTGAAATGCCTCACACCAAGAAGAACAAAGAGTGGTAGAAAGGAACAGTCTGTTTCGTCGCATTCTCGTAGTCATAAACAACAACAACAACCGCCGCCGCCGCAACAACAACATCATCCGGCTCCTCCTCCTCCACGTCCTACGCCTACAGACATTCCAAAGGGAAATCAGGTTCAAAAGGAAGCAGAGAAAGAGAAAGAGAAAGAGAATGAGATTATTGGGGAAAAGAATAACATTGCAGCACAAACCTTCACCTTCAGAGAATTGGCCACTGCTACAAAGAATTTCCGTCAAGAATGTCTCATTGGTGAAGGAGGGTTTGGGAGAGTTTACAAAGGAAAACTCGATAAAACTAATCAGGTTGTAGCAGTGAAGCAGCTTGACAGAAATGGATTGCAAGGGAACAGAGAGTTTCTTGTGGAAGTTTTGATGCTAAGCCTTTTACACCATCAAAACCTTGTCAATCTCATTGGCTATTGTGCAGATGGTGATCAAAGACTGTTGGTCTATGAGTACATGCCTTTAGGATCTCTGGAAGATCATCTACTTGATCTTCCATATGGAAGGAAGGCATTGGATTGGGGAACAAGGATGAAAGTAGGGTTGGGAGCAGCAAAAGGGCTAGAATACTTGCATAACAAAGCCAACCCACCAGTGATATATAGAGACTTGAAATCATCAAACATACTATTGGACGGTGATTACAATGCAAAGCTGTCAGATTTTGGACTTGCAAAGCTTGGTCCTGTTGGAGACAAGTCCCATGTTTCCTCCAGAGTTATGGGAACCTATGGATATTGTGCTCCTGAGTATCAAAGAACTGGTCAACTTACTCTCAAATCTGATGTCTATAGCTTTGGCGTCGTTTTGTTGGAACTCATCACTGGCAAGAGAGTCATCGACAACACTCGTCCAGCTAAACAACAAAATTTGGTCACTTGGGCATGCCCAATATTCAAGGAACCAGCTAGATTCAAGGAGTTGGCAGATCCTCTTCTTGGTGGAGACTTTCCTATAAGGGCTCTGAACCAAGCGATCGCGGTCGCCGCCATGTGCCTCCATGAGGAAGCGACGACCCGACCGTTGATGTGCGACGTTGTCACTGCTCTCAGCTTCTTAGGAGCAGAAGCCACACAGTCGTCGAGGTCTTCGTCGTTAGGTGATGTCCCATCACCCGTTGATGATTCCAATTTGATGAATCTATCCAAACCCATCGACTATCTTCACAATGACGAAACAGCTGAGGCACGCCAACGAGCGGTCGCCGAGGCCATGGAATGGGGTTCGTCCTCCAAGCAAAATGCTGCAGCTTCGCGCCCGGGAAGTTCTTCTTCCTTGTAA 1425 45.26 MKGRKCLEIEDIYLNKRQQHHPPQLNITLKCLTPRRTKSGRKEQSVSSHSRSHKQQQQPPPPQQQHHPAPPPPRPTPTDIPKGNQVQKEAEKEKEKENEIIGEKNNIAAQTFTFRELATATKNFRQECLIGEGGFGRVYKGKLDKTNQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHQNLVNLIGYCADGDQRLLVYEYMPLGSLEDHLLDLPYGRKALDWGTRMKVGLGAAKGLEYLHNKANPPVIYRDLKSSNILLDGDYNAKLSDFGLAKLGPVGDKSHVSSRVMGTYGYCAPEYQRTGQLTLKSDVYSFGVVLLELITGKRVIDNTRPAKQQNLVTWACPIFKEPARFKELADPLLGGDFPIRALNQAIAVAAMCLHEEATTRPLMCDVVTALSFLGAEATQSSRSSSLGDVPSPVDDSNLMNLSKPIDYLHNDETAEARQRAVAEAMEWGSSSKQNAAASRPGSSSSL 474
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 8661899 8666375 - ClCG09G009080.2 Cla09g00842 280262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g00842 474 Pfam Protein kinase domain 126 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla09g00842 474 MobiDBLite consensus disorder prediction 455 474 - -
Cla09g00842 474 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL26-RELATED 51 463 - -
Cla09g00842 474 Gene3D Transferase(Phosphotransferase) domain 1 201 416 - -
Cla09g00842 474 SUPERFAMILY Protein kinase-like (PK-like) 110 407 IPR011009 -
Cla09g00842 474 ProSitePatterns Protein kinases ATP-binding region signature. 130 153 IPR017441 GO:0005524
Cla09g00842 474 PANTHER OS07G0668900 PROTEIN 51 463 - -
Cla09g00842 474 ProSiteProfiles Protein kinase domain profile. 124 401 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla09g00842 474 Gene3D Phosphorylase Kinase; domain 1 82 200 - -
Cla09g00842 474 MobiDBLite consensus disorder prediction 61 79 - -
Cla09g00842 474 ProSitePatterns Serine/Threonine protein kinases active-site signature. 247 259 IPR008271 GO:0004672|GO:0006468
Cla09g00842 474 CDD STKc_IRAK 130 398 - -
Cla09g00842 474 MobiDBLite consensus disorder prediction 440 474 - -
Cla09g00842 474 MobiDBLite consensus disorder prediction 85 102 - -
Cla09g00842 474 SMART serkin_6 124 401 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla09g00842 474 MobiDBLite consensus disorder prediction 19 33 - -
Cla09g00842 474 MobiDBLite consensus disorder prediction 14 102 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g01091 Cla-Chr3:21820415 Cla09g00842 Cla-Chr9:8661899 3.68E-158 dispersed
Cla09g00842 Cla-Chr9:8661899 Cla10g01964 Cla-Chr10:35470374 9.80E-167 dispersed
Cla09g00842 Cla-Chr9:8661899 Cla05g00626 Cla-Chr5:5770602 6.03E-175 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80801 PF00069 Pkinase 4.80E-46 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g00842 - - cmo:103497640 704.131