Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g00856 ATGGCGATTCTGAAGCTTTTTTCTCTCTGCATTTTCTTCTTCTTATTGATCAGACCCCCTGTACGATGTGATTCCTTACATTTTCTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTTTCTTTTGATGTTCAGCTTCTTTTGGGAAAGATCAGAGCTTCACTTGAAGGAGACACTCAAAACTTGCTTTTGTCTTCATGGAATTACTCTCTGCCTCTTTGTCAATGGAGGGGACTCAAATGGGTCTTCTCTACTGGAACTCCACTGGTCTGCAGTGATTCTTCTTCTCCACAGTGGTCTAATCTCACTCTTTTCAAAGACCCTTCTCTTCATGTTCTCTCTTTGCAACTTCCATCTGCTAATCTCACTGGTTCGTTGCCCAAGGAGCTTGGTGAGTTCACTATGCTCCAAAGCCTCTATCTAAGTATAAACTCTTTGACTGGAACCATTCCACTTGAACTTGGTTACAGCTCCTCTCTTTCTGACATTGATTTGAGTAGCAATCTTTTGACTGGAGCTCTTCCACCCTCGATCTGGAATCTGTGTGAGAAACTTGTTTCTGTCAGACTACATGGCAATTCATTATCTGGGTCACTGCCGGAGCCGGCTTTACCAAACTCCACCTGCAAGAATTTGGAAGCTTTGGATTTGGGCAACAATCAGATTTCAGGTACTTTCCCAGAATTCATTACTAGATTTCAGGGTCTGAAAGAGCTTGATCTTGGGAAAAATTTGTTGTCTGGACAAATCCCTCAGAGCTTAGGCCAGTTAGAGCTGGAGAAGTTGAACCTTTCAAACAACAATTTCAGTGGAATATTGCCTGTTTTTAGTAACTCAAAGTTTGGTGTTGAGGCTTTTGAAGGGAATAGTCCTGGGCTTTGTGGGGAGCCTTTGAAAAGCTGTGCAGGACCTTCTCATTTGAGTTCAGGTGCCATTGCTGGCCTTGTTATCGGCTTGATGACTGGGACGGTGGTTTTAGCTTCGTTGCTTATTGGCTATATGCAAAACAAGAAGAAGAAGAGTATGAGTGAGAGTGAAGATGAGATTGACGAAGGAGAAGATGAAGAGAATGGTGGCAGTATCGGTGCAGGCGGTGAAGGAAAGCTCATTTTGTTTCAGGGTGGTGAGCATCTGACATTGGATGATGTCTTGAATGCTACAGGGCAAGTTATGGAAAAAACAAGCTATGGCACTATATATAAGGCGAAGCTTGCTGATGGAGGCACCATTGCTCTGAGATTGCTGAGGGAAGGTAGTTGCAAAGACAGAAATTCTTGTTTGTCTGTGATTAAACAGTTGGGAAAGATTCGCCACGAGAACTTGATTCCTTTGAGAGCTTTCTATCAGGGAAAGAGAGGAGAGAAGCTCCTTATTTATGACTATCTGCCTATCAGAACTTTACATGATTTTCTACATGGTATGCACACTCTCTTACGTTTCATTTTAATGGCTGAGCTTTCTTCTCAGTTTTCCCTCTCCCTTTCAAATCAGCAATTTGCAATAAGCATTTTGAGTTGGTCTAATGAGCATCTTACTCCAATTGAACAGAAAAACTGTACCGTTGTATTGAGCAGCTCCCCACAATCTAGAGCAGGAAAACCAGTGTTGAACTGGGCTAGGAGGCACAAGATTGCCTTAGGCATCGCCCGAGGACTAGCGCATCTTCACACAGGTCTTGAAGTGCCCATTACACATGGCAACGTTAGATCAAAAAATGTGCTTGTGGATGACTTCTTTGCAGCGAGACTGACGGAGTTTGGGCTCGACAAGCTAATGATCCCATCGGTAGCTGACGAAATCGTCTCGCTTGCAAAATCAGATGGGTACAAGGCACCGGAGCTGCAACGGATGAAGAAATGCAATTCGAGAACAGATGTGTATGCATTTGGAATCTTGCTATTGGAAATTCTGATTGGGAAGAAACCGGGAAAAAGTGGAAGAAATGGAGAGTTTGTGGATCTGCCATCAATGGTGAAAGTCGCAGTTTTAGAGGAAACAACAATGGAGGTTTTCGATGTGGAGGTTTTGAAAGGGATTAGAAGTCCCATGGAAGATGGAATTGTTCAAGCATTGAAGCTTGCAATGGGCTGCTGTGCTCCAGTGGCTTCAGTAAGACCCTCCATGGATGAAGTTGTGAAGCAGTTGGAAGAGAACAGACCAAGAAACAGATCTGCTCTGTACAGCCCAACAGAAACAAGAAGTGAGATTGGTACCCCATTTTGA 2235 43.31 MAILKLFSLCIFFFLLIRPPVRCDSLHFLSSSSSSSSSSSSSSFSFDVQLLLGKIRASLEGDTQNLLLSSWNYSLPLCQWRGLKWVFSTGTPLVCSDSSSPQWSNLTLFKDPSLHVLSLQLPSANLTGSLPKELGEFTMLQSLYLSINSLTGTIPLELGYSSSLSDIDLSSNLLTGALPPSIWNLCEKLVSVRLHGNSLSGSLPEPALPNSTCKNLEALDLGNNQISGTFPEFITRFQGLKELDLGKNLLSGQIPQSLGQLELEKLNLSNNNFSGILPVFSNSKFGVEAFEGNSPGLCGEPLKSCAGPSHLSSGAIAGLVIGLMTGTVVLASLLIGYMQNKKKKSMSESEDEIDEGEDEENGGSIGAGGEGKLILFQGGEHLTLDDVLNATGQVMEKTSYGTIYKAKLADGGTIALRLLREGSCKDRNSCLSVIKQLGKIRHENLIPLRAFYQGKRGEKLLIYDYLPIRTLHDFLHGMHTLLRFILMAELSSQFSLSLSNQQFAISILSWSNEHLTPIEQKNCTVVLSSSPQSRAGKPVLNWARRHKIALGIARGLAHLHTGLEVPITHGNVRSKNVLVDDFFAARLTEFGLDKLMIPSVADEIVSLAKSDGYKAPELQRMKKCNSRTDVYAFGILLLEILIGKKPGKSGRNGEFVDLPSMVKVAVLEETTMEVFDVEVLKGIRSPMEDGIVQALKLAMGCCAPVASVRPSMDEVVKQLEENRPRNRSALYSPTETRSEIGTPF 744
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 8791242 8794068 - ClCG09G009200.1 Cla09g00856 280276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g00856 744 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 27 478 - -
Cla09g00856 744 SUPERFAMILY Protein kinase-like (PK-like) 394 725 IPR011009 -
Cla09g00856 744 SUPERFAMILY L domain-like 61 280 - -
Cla09g00856 744 Gene3D Transferase(Phosphotransferase) domain 1 526 737 - -
Cla09g00856 744 PANTHER KINASE-LIKE PROTEIN TMKL1-RELATED 27 478 - -
Cla09g00856 744 Coils Coil 339 359 - -
Cla09g00856 744 MobiDBLite consensus disorder prediction 345 366 - -
Cla09g00856 744 Pfam Leucine rich repeat 215 273 IPR001611 GO:0005515
Cla09g00856 744 Gene3D Ribonuclease Inhibitor 48 189 IPR032675 -
Cla09g00856 744 PANTHER KINASE-LIKE PROTEIN TMKL1-RELATED 532 744 - -
Cla09g00856 744 Gene3D Phosphorylase Kinase; domain 1 375 465 - -
Cla09g00856 744 MobiDBLite consensus disorder prediction 725 744 - -
Cla09g00856 744 MobiDBLite consensus disorder prediction 724 744 - -
Cla09g00856 744 Gene3D Ribonuclease Inhibitor 190 307 IPR032675 -
Cla09g00856 744 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 532 744 - -
Cla09g00856 744 Pfam Protein tyrosine and serine/threonine kinase 393 719 IPR001245 GO:0004672|GO:0006468
Cla09g00856 744 ProSiteProfiles Protein kinase domain profile. 389 744 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla09g00856 Cla-Chr9:8791242 Cla05g01211 Cla-Chr5:13547561 9.92E-82 dispersed
Cla09g00856 Cla-Chr9:8791242 Cla05g00939 Cla-Chr5:9311942 1.21E-68 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80802 PF07714 PK_Tyr_Ser-Thr 1.70E-23 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g00856 - - cmo:103497530 1177.54