Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g00858 ATGAATGATCTTGTGGAATTTCATTCTGAAGATTTGCATGCAGGGTTTGTAAATGAACAACAAGAAGAAATTATGGATCAAACACAGATCTGGCTTCATGATCAAAATCAACAACAACAAAATCATCAAAATTTTCTGTCTGATAATGATGATGATACTTTGATGTTCTACTCCGATTTCCCTCCACTGCCTGATTTTCCATGCATGTCGTCGTCTTCGTCGTCGTCGTCTACTCCTGCTCCGGTTAAAGCCACGGCTTCGTCCTCGTCGTCCTCCTCATCGTCCTCCGTCACTTCATGGGCAGTTTTGAAATCAGATGCTGATGAAATTACTGAAGAAATCAGAACAAATTATGATGCCAACAAATTATCATCGCCTCCGGTAGCGGAGACCGCGTTCACCGGTGGCGGGGATTGTACCGACGATATGATGATGGAGACGTTTGGATACATGGATTTACTCGAAGATAGTAACGAGTTTTTCGATCCGACGTGTATATTTCAAAACGAACAAGAACAACAACAAGAACAACGAGTAGTAGTAGAAGAAGATCAAGAGGGTTTGGAAGATTTGCAATTGGAGAGATTTGAAGAAGTGGAAATGGAGGATTTGATGATGATGCATGGCGGTGAAAGTAAGGATAATGATGATGATAATGGAGGGAAACAAAACGACGTGGTTGAGGAAGAAGATATGGCAAAGGTTTTTTTGGAATGGCTTAGGAGTAATAGAGAAACAGTTTCTGCTGATGATTTGAGGAATGTTAGAATAAAAAAAGCCACCATCGAAAGCGCCGCCCGCCGACTCGGCGGCGGCAAGGAGGGAATGAAACAGCTTTTGAAGCTTGTTCTTCAATGGGTTCAAACAAATCACCTTCACAAGAGGAAATTCAAAGATCTCACTGTTGAAACTGATACCCATTTCTTAGGGTTTCAAAATAACCCTAATTCCTCCTCCAACCTCCCTTGGATCCAAACCCCGCCCCCGTTACCGCCTCCGCCTTTGTATTCTTCTCCGATGCTCGGATATGTCCCGGCCACTGGCGGAGATGCGTATGGTGTTGGCCGTGGTTTCTCGGATCATTACGGCCAGTTACTTTACTCCTCCTTGTCCTGGAGTAATAATAGTAGTAGTAACAATAATAATAATTTCTCGGGACAGTTTGGACTACCCCCGTCGCATTTCAACTCCTTTGTTGATAATTTTGCGGCGGGGCCTCCCCTGCCACCGCCGCAACCACAAGGTTTTGCAACGGGGTATGGCGGAGGGCATCAATTCCCATATGTGGGTCAGTATTTTCAAGGGCAGGGTGGTAGTGGTGGCGCCGGTGGCGATAATGGTTTGGTTAGGTTGGATTCCTCAGCAACAAAGGAGGCTCGGAAGAAGAGAATGGCGAGGCAGCGGCGATTCTCTGCACATCATCGCCACCATCATGGTGGCCACCATGGCAACAGCCACCAAGATCAGCATCCCACTCAGATGAATCCTAATGCTTCAGATCATTGCAACATGGCTACAACTACTCAGCCCAATGCTGGTAACTGGGTCTACTGGCCGTCCCCCAGCGCAGCAGTGGCCTCTTCCGCCACATCTTCCGGATTTCCGGTGGACTCGCAGCCTGTACAAGCTGTTGATCGGCCTAATTCTTCCATGCAGAATCAGAACTACCCACCACGAATTCCATCTGACCGGCGGCTGGGATGGAAACCAGAGAAAAATTTGAAGTTTCTTTTACAGAAGGTTTTGAAACAAAGTGATGTGGGCAATTTGGGGAGAATTGTACTGCCAAAGAAAGAAGCAGAAACCCATCTCCCAGAATTGGAGGCAAGAGATGGGATTTCCATTGCAATGGAAGACATTGGAACTTCAAGAGTTTGGAATATGCGTTATAGGTATTGGCCAAACAACAAAAGCAGAATGTATCTCCTTGAAAATACAGGGGACTTTGTAAGAGCCAATGGACTTCAAGAAGGAGACTTCATTGTCATATACTCAGACGTCAAGTGTGGGAAATATGTAAATGATTCGAGGAGTGAAAGTACGGCAACCCGGGTCGAAACCCGAGAGCAGAAGGCCAGGAAAATCGCAAAGAAGCCATACGACTACGGCTGCCAATGCGTCGTCACCTTCGCTAACGACCATCGCAACACCGAAGAGACACTAAAGAAACTTGTTCTGATTCTGTTAAAGATTTTTAAGACTGAGGGCCATTGGCCACTGCATGAAGAACAGAGATAA 2238 46.02 MNDLVEFHSEDLHAGFVNEQQEEIMDQTQIWLHDQNQQQQNHQNFLSDNDDDTLMFYSDFPPLPDFPCMSSSSSSSSTPAPVKATASSSSSSSSSSVTSWAVLKSDADEITEEIRTNYDANKLSSPPVAETAFTGGGDCTDDMMMETFGYMDLLEDSNEFFDPTCIFQNEQEQQQEQRVVVEEDQEGLEDLQLERFEEVEMEDLMMMHGGESKDNDDDNGGKQNDVVEEEDMAKVFLEWLRSNRETVSADDLRNVRIKKATIESAARRLGGGKEGMKQLLKLVLQWVQTNHLHKRKFKDLTVETDTHFLGFQNNPNSSSNLPWIQTPPPLPPPPLYSSPMLGYVPATGGDAYGVGRGFSDHYGQLLYSSLSWSNNSSSNNNNNFSGQFGLPPSHFNSFVDNFAAGPPLPPPQPQGFATGYGGGHQFPYVGQYFQGQGGSGGAGGDNGLVRLDSSATKEARKKRMARQRRFSAHHRHHHGGHHGNSHQDQHPTQMNPNASDHCNMATTTQPNAGNWVYWPSPSAAVASSATSSGFPVDSQPVQAVDRPNSSMQNQNYPPRIPSDRRLGWKPEKNLKFLLQKVLKQSDVGNLGRIVLPKKEAETHLPELEARDGISIAMEDIGTSRVWNMRYRYWPNNKSRMYLLENTGDFVRANGLQEGDFIVIYSDVKCGKYVNDSRSESTATRVETREQKARKIAKKPYDYGCQCVVTFANDHRNTEETLKKLVLILLKIFKTEGHWPLHEEQR 745
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 8807601 8810799 - ClCG09G009230.2 Cla09g00858 280278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g00858 745 MobiDBLite consensus disorder prediction 454 502 - -
Cla09g00858 745 MobiDBLite consensus disorder prediction 529 559 - -
Cla09g00858 745 SMART B3_2 578 679 IPR003340 GO:0003677
Cla09g00858 745 MobiDBLite consensus disorder prediction 486 502 - -
Cla09g00858 745 CDD BfiI_C_EcoRII_N_B3 576 672 - -
Cla09g00858 745 Pfam B3 DNA binding domain 579 672 IPR003340 GO:0003677
Cla09g00858 745 Gene3D - 569 687 IPR015300 -
Cla09g00858 745 SUPERFAMILY DNA-binding pseudobarrel domain 577 672 IPR015300 -
Cla09g00858 745 MobiDBLite consensus disorder prediction 529 565 - -
Cla09g00858 745 MobiDBLite consensus disorder prediction 461 483 - -
Cla09g00858 745 ProSiteProfiles B3 DNA-binding domain profile. 578 691 IPR003340 GO:0003677
Cla09g00858 745 MobiDBLite consensus disorder prediction 68 98 - -
Cla09g00858 745 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 26 687 IPR044800 GO:0003700
Cla09g00858 745 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 26 687 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00812 Cla-Chr1:9566809 Cla09g00858 Cla-Chr9:8807601 8.25E-38 dispersed
Cla01g02255 Cla-Chr1:36484598 Cla09g00858 Cla-Chr9:8807601 3.32E-32 dispersed
Cla09g00858 Cla-Chr9:8807601 Cla10g02148 Cla-Chr10:37094920 1.26E-14 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61714 PF02362 B3 5.00E-17 CL0405 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g00858 - - csv:101204282 975.696