Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g00894 ATGGATTCCAAGTTACTGCTCTATTCCCCTAAAGCATCGCTATCCATATCCGTACCTTTCATTCTTGGGCACAAAGCTTATTATTCTGTCAAATCGGAATTTTGGGGTAAGAATTTGGATTTGCGAAACAGAAATGATAATTTAAGAACATCTCATGTCCCTTTTCAACCGATTAGAGCTGTTGTGAAACGGAGGAAAGAGCTTCCGTTTGATAATGTAATACAGAGGGATAAGAAGCTGAAGTTAGTTATGCGAATTAGGAAGATTCTAGTTCAACAACCTGATAGAGTTATGTCACTTAAGGAATTAGGTAAATTCAGGAGAGATTTAGGTCTGGAGAAAAAGAGGAGGCTCATTGCATTGTTGAAGAAATTCCCTGCAGTATTTGAGGTTGTGGAAGAAGGGGCGTTTTCGTTGAAATTCAAATTAACGGCCGAGGCCGAAAGGTTGTATTTGGAGGAGTTGAAGATCAGAAATGAGATGGAAGGTTTGTTGGTTATTAAGCTCAGGAAGCTACTGATGATGTCTGCTGATAAACGAATATTGTTGGAGAAGATTGCACATTTGAGGACTGATTTCGGTCTTCCTTTAGAGTTTCGCGACACGATTTGCCATCGTTATCCTCAGTACTTTAGAGTTGTGGCAACCGAGCGCGGTCCAGCCCTCGAATTGACACATTGGGATCCTGAACTTGCTGTTTCTGCAGCAGAGTTAGCAGAAGAGGAAAACCGAGCTAGAGAATTGGAAGAGAAGAATCTAATTATCGACCGACCGCTGAAGTTTAATCGAGTGAAGCTACCTAAGGGGCTTAACCTTTCAAAGAGTGAGATGAGGAAAATTAGTCAGTTTAGGGACATTCCTTATATCTCTCCCTATTCTGATTTCTCTGGGATTAAGGCAGGTACACCCCAGAAAGAAAAACATGCTTGTGGGGTTGTTCATGAGATTTTAAGCCTTACGCTTGAGAAGAGAACTTTAGTGGATCATCTTACTCATTTCCGAGAGGAGTTTAGGTTCTCTCAGCAGCTGAGGGGGATGCTAATAAGGCATCCTGATATGTTTTACGTCTCGTTGAAAGGGGATAGAGATTCGGTCTTCCTCAGAGAAGCGTATCGTGATTCCCAGTTGATCGACAAAGATCGGTTATTAATCATAAAAGAGAAACTTAGAGCTCTTGTTGCTGTTCCTCGATTCCGAGGCAGAGGAGCTCCCACAAGTGACACGGATGGGGGAGATACCAATCAGCCAGATGATATGAGTGGTGAAGAATGGTCTGATGTTGATAATCTTTTGGGCGATGATGATGATGAATTCGACGAAGACGATGATGATGGAGGTTTTGAGGATGACTGGAGTGATGAAGATGATACCCCACCAAGTTTCGATGGAGATCGAGATGGAGAATCCATAAATATTGGATCAAGGAAGCAAAAACAGGTCAATAACTTGCAACAGGTTAGTCAGAGTCTTCTTTCTCCCGTACTACCCGATGGAAGGCCTCGAGAAAGATGGTGA 1515 42.44 MDSKLLLYSPKASLSISVPFILGHKAYYSVKSEFWGKNLDLRNRNDNLRTSHVPFQPIRAVVKRRKELPFDNVIQRDKKLKLVMRIRKILVQQPDRVMSLKELGKFRRDLGLEKKRRLIALLKKFPAVFEVVEEGAFSLKFKLTAEAERLYLEELKIRNEMEGLLVIKLRKLLMMSADKRILLEKIAHLRTDFGLPLEFRDTICHRYPQYFRVVATERGPALELTHWDPELAVSAAELAEEENRARELEEKNLIIDRPLKFNRVKLPKGLNLSKSEMRKISQFRDIPYISPYSDFSGIKAGTPQKEKHACGVVHEILSLTLEKRTLVDHLTHFREEFRFSQQLRGMLIRHPDMFYVSLKGDRDSVFLREAYRDSQLIDKDRLLIIKEKLRALVAVPRFRGRGAPTSDTDGGDTNQPDDMSGEEWSDVDNLLGDDDDEFDEDDDDGGFEDDWSDEDDTPPSFDGDRDGESINIGSRKQKQVNNLQQVSQSLLSPVLPDGRPRERW 504
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 9221414 9222928 + ClCG09G009550.1 Cla09g00894 280314

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g00894 504 MobiDBLite consensus disorder prediction 473 492 - -
Cla09g00894 504 MobiDBLite consensus disorder prediction 399 504 - -
Cla09g00894 504 Coils Coil 231 251 - -
Cla09g00894 504 MobiDBLite consensus disorder prediction 419 461 - -
Cla09g00894 504 PANTHER PROTEIN WHAT'S THIS FACTOR 1 HOMOLOG, CHLOROPLASTIC 42 450 IPR045040 GO:0003723
Cla09g00894 504 Pfam Plant organelle RNA recognition domain 66 394 IPR021099 GO:0003723
Cla09g00894 504 PANTHER PROTEIN WHAT'S THIS FACTOR 1 HOMOLOG, CHLOROPLASTIC 42 450 IPR040293 GO:0000373|GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g00894 - - - csv:101208628 849.351
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cla08g00221 Cla09g00894 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g01503 Cla-Chr7:32273928 Cla09g00894 Cla-Chr9:9221414 3.29E-73 dispersed
Cla09g00295 Cla-Chr9:2847825 Cla09g00894 Cla-Chr9:9221414 4.81E-54 dispersed
Cla09g00894 Cla-Chr9:9221414 Cla11g01384 Cla-Chr11:27379891 1.02E-58 dispersed
Cla10g00658 Cla-Chr10:10013524 Cla09g00894 Cla-Chr9:9221414 4.23E-38 dispersed
Cla10g01575 Cla-Chr10:31226821 Cla09g00894 Cla-Chr9:9221414 1.66E-38 dispersed
Cla09g00894 Cla-Chr9:9221414 Cla09g00635 Cla-Chr9:5988987 9.35E-48 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1388 . . . . . . . . . Cmo15g00606 . . . . . . Cpe13g00681 Bhi04g01780 . . . . . . Cla08g00221 . Cec08g0008 Cco08g0293 . . Cre08g0194 . . . . . . . Cme03g00320 . . . . . . . . . . . . . . Car15g00555 . . . . . . . . . Cla09g00894 Cam09g0945 Cec09g0948 Cco09g0952 . . Cre09g0914 Lsi08g00552 . Chy03g00307 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010663 1 1 1 0 1 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 0 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla09g00894 Cla_Chr09 FPKM 40.277687 44.128201 70.418404 65.85099 28.494848 24.903473 28.761639 82.930099 80.44442 77.899376