Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g00902 ATGGGGCGAAAGAAGCCTACTGCAAGGGATGATGACAGCGCCCCTGCGGCAGCCCATGGTGGTGGGAAGTCCAAGAAAAAAACGTTTGCAGTAGACGACGATGAGTACTCCATTGGAACCGAGTTGTCTGAAGAACCCCAGGTTCCGGAGGAGAAGGTCGTGATAACTGGGAAGAAGAAGGGTAAGAAAGGCAATTCAAAAGCTTCACAACTTAAAGAGGATGACGATGACGATGATGTGGACGGTGTTTCAGAAATTGTTATTACCGGGAAGAAGAAGGGCAAGTCGAAGAAGGGTGGAAGTAGCAGTGCTTTTACTGCTGCCAGTTTTGGTTTGCTTGAAGAGGAGGGAATGGATGACGATGATGAATCTGTGTTGACTGCAGAAAAGGATGATGATGAAGAGGAAGATTCTGCGATCAAGTTTTCAGGTAAGAAGAAGTCATCCAAATCTTCAAAGAAGAGTGGTTTTTCTGCAGTGTCAGCATTCACTGCCCTTAATGATGAGAATGATGAGGATGTAATTGGTGATGAGGTCATGGTTGATGAAGATATTGATGATGAGCCTGTTATTGCATTTACTGGTAAGAAGAAGTCATCAAAAGGTGGCAAGAAGGCCGGGAGTGCATTTACAGGTTTTAGTGGTCTTGACTATGAGGACGAGGACAGAGATGATGATGATAAAGATGGGGATGAAGATGTTACATCAATTAGCTTCTCTGGTAAGAAAAAGAAGTCAGCTAAGGCTTCAAAGAAGGGTGGAAATTTGTTTAGTGCAGCATTAGCAGATGAGGAAAATGGTGGCGATGTTTCTATTTCAGAGCCAAATAAATTAGACAATGATGGTGTTAATGAAGACGATGTCAATGTTATTGCATTTTCTGGTAAGAAAAAGTCCTCTAAGAAGAAAAGCAGCAGTACTTTTACTGCATTAAATGATGAAAATGCGCAGGGCAATGAAGTTAAGGATGTAGTTGTACCTGAAATACTTAATACAGTAAGTAGCAATCTTGATTCTGATTTATCTAATGCTAACAAGATGGAAGCGGTGGCAGAGACTTCAAAAAATAAAAAGAAAAAGAAGAAGAGCGGAAGGACTGCTCAAGAAGAAGATGATTTGGATAAGATTCTGGCTGAGCTAGGAGAAGGGCCTACCATATCAAAACCAGCAGACCCTCCCCTTTCTTCCCAGGAGGCCAAAGTTGAGAATCCACCTGAGCCAGTAGCTCCTCCTGAAAAGGAAGCTGAAGAAGAGAGCACAGAATCGGCTGCAGCAAGGAAGAAGAAAAAGAAGAAGGAGAAGGAAAAAGAAAAAAAGGCTGCTGCTGCTGCAGCAGCTGCTGAAGGGAATGATGAAAAAATTGAGGAGGTAAAGACTGAAATTATAGAACCCAAAAAAGGTGCTGCAAAGAGTAAAGTGCCGGAGAAGAAAGTGCCAAAGCATGTTAGGGAGATGCAGGAAGCAATGGCTAGAAGAAAAGAAGAAGAAGAGCGAAGGAAAAGGGAGGAGGAAGAGAGATTGAGAAAGGAAGAAGAAGAGAGACGTAGGCTAGAAGAACTCGAAAGGCAAGCTGAGGAGGCTAAGCGTAGGAAAAAGGAAAGAGAAAAAGAGAAGCTTTTAAGGAAGAAACAGGAAGGCAAGCTATTAACAGGTAAACAAAAGGAAGAACAACGGAGGTTGGAGGCAATGAGGAACCAGATTTTATCAAATGCCGGAGGTTTACCTCTGTCTACATCTGACCCTAGTGCACCATCTAAACGACCAAAATACCAGACAAAGAAGACAAAACCAGCCCATCATCAAACAAATGGAAATGCACAAACGAAGGGAGTGGAGCATACAGAAGAAAAAATACAAGAAAAAGATGTGGCAGAGACAGAAATATTGGAGTCACAGAAGATTGCAGCTGTTGAGTTGATGCATGTGGAGGAAAAAGCAGATGTTGTTGAGGCTACAGAAGACAATGAAATTCAAGAAGATGAGGATGAGGATGAATGGGATGCGAAGAGTTGGGATGATGCTGTTGTTGATCTTTCCTTAAAAAGTTCCTTCGCTGACGAGGAGCTTGAATCAGAACCTGAGAATGGCATGAAAAAAGATACAAAAAATGGTGCAGGTGCCAAGCTAGCTGCCCCTGCTCAAAAAGGTTTACCTTCTCAGTCTATAAAGTCACAAGATATTGAAAACAAAAAGAAGCAGGACGAGGTTGAGGTTGCCGCCAAGGGCAAAAGAAAAGATGATGCTGTTAAGAAAAAAGCTTCAGTCCCAGATGCTACTCCTGTACCACAGGAAGAAAATCTTCGCTCGCCCATATGTTGTATTATGGGTCATGTTGATACTGGTAAAACCAAGCTGCTGGACTGTATCCGTGGTACAAATGTTCAAGAGGGAGAGGCGGGAGGAATTACTCAGCAGATTGGGGCAACATATTTTCCTGCCGAGAACATTCGGGAAAGAACTAGGGAATTGAAGGCTGATGCAAAGCTGAAGGTTCCTGGCCTACTTATTATTGATACCCCTGGGCATGAGTCGTTTACAAACTTACGTTCTCGTGGTTCGGGCTTATGTGATCTTGCAATTTTGGTTGTTGACATCATGCATGGCCTAGAGCCACAAACAATAGAATCTCTTAATCTCTTGAGGATGAGAAATACAGAATTTATTGTTGCTCTGAATAAGGTTGACAGACTTTATGGGTGGAAAACAATCCGCAATGCACCAATTCTTAAGACAATGAAGCAGCAAACCAAGGATGTGCAGAACGAGTTCAATATGAGGCTTATTCAGATTATTACTCAATTTAAAGAGCAGGGATTGAATACTGAGCTGTATTATAAAAATAAAGAAATGGGGGAGACTTTCAGTATAGTACCTACAAGTGCTGTTACTGGTGAAGGTATTCCAGACATGTTACTATTATTGGTGCAGTGGGCCCAGAGAACTATGACGAAGAAACTTACATATAGTGATGAAGTGCAGAAGTTCGAATGTGATCATATTCTGATTGTGCATCAACAGTGCACGGTCTTGGAGGTCAAGGTTGTTGAAGGCCATGGAACAACTATTGATGTCATATTGGTTAATGGTGTGTTGCATGAAGGAGATCAAATTGTTGTTTGTGGGATGCAGGCAAGCACCGATCTAATTATGGAATTACCTTTTTTGTTAGAGGGTCTTAAAGGCCCAATTGTTACTACTATTCGAGCCCTATTGACGCCCCATCCAATGAAGGAACTCCGGGTGAAGGTAGGAAAACAATATAATTTAAATGTAGGAAACAGTGTTATTGAGGCAACCCTAGGCGCCCGCAACCTGGAAAAGGGAACGTTTCAGAGTCTGGATTTAGGTTCCATTCCTTATGGACAAAAGAATCTAAAAGCCAGTACCAGTTTGGTTGGCATGGGTGAATCTAACTGGAGGGGGGTGGTTGGTGGAGGGAATGGAACATATCTGCATCATAAGGAAATCAAGGCTGCTCAGGGAATTAAAATAACTGGACAGGGTCTCGAGCATGCCATTGCTGGAACCAGTCTTCATGTGGTAGGTCCTGAGGATGACTTGGAAGACATCAAGGATTCAGCTATGGAAGATATGAAGTCAGTCTTGAGCAGGATAGACAAGACTGGTGAGGGAGTCTGTGTTCAAGCATCTACACTTGGTTCCTTGGAAGCATTGTTGGAGTTTTTGAAGTCCCCGGCAGTGAGCATTCCTGTTAGTGGAATAAGTATAGGACCCGTTCATAAAAAAGATGTCATGAAAGCTAGTGTAATGCTTGAAAAGAAAAAAGAATATGCCACTATTTTGGCTTTTGATGTTAAAGTGACTCCAGAAGCTCGAGAACTTGCTGATGAGCTTGGTGTGAAGATTTTTATTGCTGATATCATATATCACTTGTTCGACCAATTCAAGGCCTATATTGATAATCTTAAGGAGGAAAAGAAGAAAGAAGCCGCTGAGGAAGCAGTTTTTCCTTGTGTTCTCAAAATTCTACCAAATTGCATTTTCAACAAGAAGGATCCAATTGTGTTGGGGGTTGATGTGATTGAGGGCATTGCCAAGGTTGGCACACCAATTTGTATTCCTCAAAGAGAATTTATTGACATTGGTCGCATTGCATCTATTGAAAATAACCACAAACCTGTTGATTATGCAAAGAAAGGGCAGAAGATTGCTATTAAGATAGTTGGGCACTCTTCGGAGGAGCAACAAAAGATGTATGGTAGACACTTTGATTTGGAGGACGAACTTGTCAGCCATATATCGAGGAAGTCCATTGACCTTCTCAAAGCGAACTACCGGGTTAGTTTACTTCTCTCCCCTTTCCTCTTTTTCATTGAGAAACTTGATTCTACCGCTTGTAATTTCATACGACTGGATATATGA 4383 42.07 MGRKKPTARDDDSAPAAAHGGGKSKKKTFAVDDDEYSIGTELSEEPQVPEEKVVITGKKKGKKGNSKASQLKEDDDDDDVDGVSEIVITGKKKGKSKKGGSSSAFTAASFGLLEEEGMDDDDESVLTAEKDDDEEEDSAIKFSGKKKSSKSSKKSGFSAVSAFTALNDENDEDVIGDEVMVDEDIDDEPVIAFTGKKKSSKGGKKAGSAFTGFSGLDYEDEDRDDDDKDGDEDVTSISFSGKKKKSAKASKKGGNLFSAALADEENGGDVSISEPNKLDNDGVNEDDVNVIAFSGKKKSSKKKSSSTFTALNDENAQGNEVKDVVVPEILNTVSSNLDSDLSNANKMEAVAETSKNKKKKKKSGRTAQEEDDLDKILAELGEGPTISKPADPPLSSQEAKVENPPEPVAPPEKEAEEESTESAAARKKKKKKEKEKEKKAAAAAAAAEGNDEKIEEVKTEIIEPKKGAAKSKVPEKKVPKHVREMQEAMARRKEEEERRKREEEERLRKEEEERRRLEELERQAEEAKRRKKEREKEKLLRKKQEGKLLTGKQKEEQRRLEAMRNQILSNAGGLPLSTSDPSAPSKRPKYQTKKTKPAHHQTNGNAQTKGVEHTEEKIQEKDVAETEILESQKIAAVELMHVEEKADVVEATEDNEIQEDEDEDEWDAKSWDDAVVDLSLKSSFADEELESEPENGMKKDTKNGAGAKLAAPAQKGLPSQSIKSQDIENKKKQDEVEVAAKGKRKDDAVKKKASVPDATPVPQEENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKADAKLKVPGLLIIDTPGHESFTNLRSRGSGLCDLAILVVDIMHGLEPQTIESLNLLRMRNTEFIVALNKVDRLYGWKTIRNAPILKTMKQQTKDVQNEFNMRLIQIITQFKEQGLNTELYYKNKEMGETFSIVPTSAVTGEGIPDMLLLLVQWAQRTMTKKLTYSDEVQKFECDHILIVHQQCTVLEVKVVEGHGTTIDVILVNGVLHEGDQIVVCGMQASTDLIMELPFLLEGLKGPIVTTIRALLTPHPMKELRVKVGKQYNLNVGNSVIEATLGARNLEKGTFQSLDLGSIPYGQKNLKASTSLVGMGESNWRGVVGGGNGTYLHHKEIKAAQGIKITGQGLEHAIAGTSLHVVGPEDDLEDIKDSAMEDMKSVLSRIDKTGEGVCVQASTLGSLEALLEFLKSPAVSIPVSGISIGPVHKKDVMKASVMLEKKKEYATILAFDVKVTPEARELADELGVKIFIADIIYHLFDQFKAYIDNLKEEKKKEAAEEAVFPCVLKILPNCIFNKKDPIVLGVDVIEGIAKVGTPICIPQREFIDIGRIASIENNHKPVDYAKKGQKIAIKIVGHSSEEQQKMYGRHFDLEDELVSHISRKSIDLLKANYRVSLLLSPFLFFIEKLDSTACNFIRLDI 1460
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 9337543 9351687 + ClCG09G009640.2 Cla09g00902 280322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g00902 1460 MobiDBLite consensus disorder prediction 570 588 - -
Cla09g00902 1460 MobiDBLite consensus disorder prediction 653 670 - -
Cla09g00902 1460 Gene3D Translation factors 1053 1107 - -
Cla09g00902 1460 Gene3D Translation factors 1003 1049 - -
Cla09g00902 1460 MobiDBLite consensus disorder prediction 218 232 - -
Cla09g00902 1460 TIGRFAM small_GTP: small GTP-binding protein domain 772 898 IPR005225 GO:0005525
Cla09g00902 1460 MobiDBLite consensus disorder prediction 335 350 - -
Cla09g00902 1460 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 767 983 IPR000795 GO:0003924|GO:0005525
Cla09g00902 1460 CDD IF2_aeIF5B_IV 1325 1420 - -
Cla09g00902 1460 PANTHER PHOTOSYSTEM II PROTEIN D1 1 1082 - -
Cla09g00902 1460 PANTHER PHOTOSYSTEM II PROTEIN D1 1147 1436 - -
Cla09g00902 1460 MobiDBLite consensus disorder prediction 647 763 - -
Cla09g00902 1460 PRINTS GTP-binding elongation factor signature 835 845 IPR000795 GO:0003924|GO:0005525
Cla09g00902 1460 PRINTS GTP-binding elongation factor signature 851 862 IPR000795 GO:0003924|GO:0005525
Cla09g00902 1460 PRINTS GTP-binding elongation factor signature 887 896 IPR000795 GO:0003924|GO:0005525
Cla09g00902 1460 PRINTS GTP-binding elongation factor signature 771 784 IPR000795 GO:0003924|GO:0005525
Cla09g00902 1460 CDD aeIF5B_II 1006 1196 - -
Cla09g00902 1460 Coils Coil 478 545 - -
Cla09g00902 1460 Coils Coil 415 444 - -
Cla09g00902 1460 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 1187 1316 IPR036925 -
Cla09g00902 1460 Coils Coil 1299 1319 - -
Cla09g00902 1460 MobiDBLite consensus disorder prediction 407 428 - -
Cla09g00902 1460 MobiDBLite consensus disorder prediction 1 81 - -
Cla09g00902 1460 MobiDBLite consensus disorder prediction 114 136 - -
Cla09g00902 1460 MobiDBLite consensus disorder prediction 193 320 - -
Cla09g00902 1460 Pfam Elongation factor Tu GTP binding domain 771 978 IPR000795 GO:0003924|GO:0005525
Cla09g00902 1460 CDD IF2_eIF5B 770 980 - -
Cla09g00902 1460 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 767 1082 IPR027417 -
Cla09g00902 1460 Pfam Elongation factor Tu domain 2 1019 1177 IPR004161 GO:0005525
Cla09g00902 1460 Gene3D Translation factors 1144 1203 - -
Cla09g00902 1460 MobiDBLite consensus disorder prediction 363 378 - -
Cla09g00902 1460 SUPERFAMILY Translation proteins 1321 1449 IPR009000 -
Cla09g00902 1460 MobiDBLite consensus disorder prediction 683 701 - -
Cla09g00902 1460 MobiDBLite consensus disorder prediction 109 156 - -
Cla09g00902 1460 Gene3D - 1204 1310 IPR036925 -
Cla09g00902 1460 Gene3D - 762 989 IPR027417 -
Cla09g00902 1460 MobiDBLite consensus disorder prediction 725 753 - -
Cla09g00902 1460 MobiDBLite consensus disorder prediction 335 624 - -
Cla09g00902 1460 Gene3D Translation factors 1317 1449 - -
Cla09g00902 1460 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 1 1082 IPR015760 -
Cla09g00902 1460 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 1147 1436 IPR015760 -
Cla09g00902 1460 MobiDBLite consensus disorder prediction 610 624 - -
Cla09g00902 1460 Pfam Translation-initiation factor 2 1191 1303 IPR023115 -
Cla09g00902 1460 MobiDBLite consensus disorder prediction 449 562 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla09g00902 Cla-Chr9:9337543 Cla11g01584 Cla-Chr11:29541339 6.72E-19 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g00902 K03243 - csv:101204360 1870.9