Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g00909 ATGTCGTTAGTTAGGCCATCTGATCCATCTCCATTATCATATGGAAGTCGCAAGCTTTACTCGTTGAAGGGAACAAATAATGCTCCTGACTTATCCACACAAAGATTTGGCTCTGAAAAACATAGAACGATGTATATGAATGATACATATTGCAGTGAGAGCTATGAGAAGTATTTCCTCGACTTCCCGATAGAAGAGCCATCGATTTCAGGAATTTCTACCAATTCTTGTCACCCCAACGCTTGGGTTGATTCTCTATCCCCCTTGTGCGATTCATTTACACTTTTTGATGCTTGTCAATCAAATTCAGACTCAGCTTGCCTCGAGAGTACAAGTCCAGACCAACTTGATTTTGAGGATGATCAAGTGAGACTGAAGTTGCAAGAATTGGAGAGAGATCTGCTGGGTGACCCGGATGCTGCAGATTACGATGTTGAGATGCTTGCTAACGGCCAGAGCATGGAAATTGATAGCGAATGGGCAAATTCGATTCAAGATGCACTACTTCATGACTCACCAAAGGAATCTTCGTCGACAGATTCTAATTTCAGTACCATCAGCAGCAATAAGGATGCATCTCAGATATCTTCACAGAATCCCAGACAAATGCTTTTAGAATGTGCTTTTGCTATCTCAGAGGAGAACTTCGAAGAAGCGAGAGCCATGATAGAACAGCTCCGAGGTATGGTCTCTGTTCAGGGAGATCCCTCACAGAGGATTGCTGCATATATGGTGGAAGGTCTTGCGGCTCGGTTGTTGGAATCAGGAAAATGTCTTTATAAAGCTTTGAGATGCAAGGAACCACCTTCCTCCGACCGTCTTGCAGCTATGCAAATCCTTTTCGAGGTCTGCCCGTGTTTCAAATTTGGCTTTATGGCTGCAAATTGTGCCATTATTGAGGCAGCGAAAGATGAGAAGAAAATTCACGTAATCGATTTTGATGTAAGCCAAGGAACTCAGTACATAAAATTGATTCAGATGCTAGCAGCTCAGCCAGGTAAGCCACCACACTTGAGGTTAACAGGGGTTGACGACCCCGAATCAGTACAGCGCCCCGTTGGAGGTCTTAGGCACATTGGACAAAGACTCGAGCAACTAGCAAAAGCACTGCGGGTGCCATTTGAATTTCGAGCGATTCCCTCAAATGCTTCTGATGTTACTCCCTCAATGCTCGCCTCCCGGCCTGGAGAAGCACTCATAGTGAACTTTGCTTTCTTGCTTCACCACATGCCAGATGAAAGCGTTTCAACCGTAAATCTACGAGACAGGCTTCTCCGTATGGTCAAGAGCTTGAACCCAAAACTAGTAACAGTCGTCGAACAGGACATGAACACAAACACCACCCCATTCTTTTCAAGATTTGTCGAAGCCTATAACTACTACGCAGCTGTTTACAATTCCCTTGATGCAACACTCCCAAGAGATAGTCAAGACAGAATAAATGTAGAAAGGCAATGTTTGGCAAAGGACATAGTCAACATTGTAGCTTGTGAAGGTGAGGAAAGAGTAGAGAGATACGAAGTAGCCGGGAAATGGCGGGCAAGAATGACGATGGCAGGCTTCACTTCCTGTTCAATGAGCAAAAATGTGACCGACCCGATTCGCAAACTGATCGAGGAGTATTGTGACAGATTCAAGATGTATGAGGAAATGGGCACAGTTCATTTTGGATGGGAAGAGAAAAGCTTGGTTGTTACTTCGGCATGGAGGTAA 1713 44.54 MSLVRPSDPSPLSYGSRKLYSLKGTNNAPDLSTQRFGSEKHRTMYMNDTYCSESYEKYFLDFPIEEPSISGISTNSCHPNAWVDSLSPLCDSFTLFDACQSNSDSACLESTSPDQLDFEDDQVRLKLQELERDLLGDPDAADYDVEMLANGQSMEIDSEWANSIQDALLHDSPKESSSTDSNFSTISSNKDASQISSQNPRQMLLECAFAISEENFEEARAMIEQLRGMVSVQGDPSQRIAAYMVEGLAARLLESGKCLYKALRCKEPPSSDRLAAMQILFEVCPCFKFGFMAANCAIIEAAKDEKKIHVIDFDVSQGTQYIKLIQMLAAQPGKPPHLRLTGVDDPESVQRPVGGLRHIGQRLEQLAKALRVPFEFRAIPSNASDVTPSMLASRPGEALIVNFAFLLHHMPDESVSTVNLRDRLLRMVKSLNPKLVTVVEQDMNTNTTPFFSRFVEAYNYYAAVYNSLDATLPRDSQDRINVERQCLAKDIVNIVACEGEERVERYEVAGKWRARMTMAGFTSCSMSKNVTDPIRKLIEEYCDRFKMYEEMGTVHFGWEEKSLVVTSAWR 570
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 9478221 9481382 + ClCG09G009720.1 Cla09g00909 280329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g00909 570 Pfam GRAS domain family 201 570 IPR005202 -
Cla09g00909 570 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 12 569 IPR030011 GO:0003700|GO:0005634
Cla09g00909 570 MobiDBLite consensus disorder prediction 171 198 - -
Cla09g00909 570 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 12 569 IPR005202 -
Cla09g00909 570 ProSiteProfiles GRAS family profile. 191 570 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00096 Cla-Chr1:845252 Cla09g00909 Cla-Chr9:9478221 7.24E-92 dispersed
Cla06g00092 Cla-Chr6:956563 Cla09g00909 Cla-Chr9:9478221 4.38E-51 dispersed
Cla09g00909 Cla-Chr9:9478221 Cla10g00432 Cla-Chr10:5807527 2.15E-144 dispersed
Cla09g00909 Cla-Chr9:9478221 Cla03g00132 Cla-Chr3:1342433 7.88E-66 transposed
Cla09g00909 Cla-Chr9:9478221 Cla02g01955 Cla-Chr2:34647663 3.83E-65 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61719 PF03514 GRAS 3.10E-130 CL0063 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g00909 - - csv:101206511 1078.93