Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g00911 ATGTCAAGCACTGCCGGTCAAGTCATCAAATGCAAAGCTGCTGTGGCTTGGGAGGCCGGAAAGCCACTAGTGATTGAAGAAGTGGAAGTGGCACCGCCGCAAGCCAATGAAGTCCGATTGAAGATCCTTTTCACATCTCTCTGTCATACTGATGTTTATTTCTGGGAAGCCAAGGGACAAACCCCATTGTTTCCTCGCATTTTTGGGCATGAAGCTGGAGGAATTGTGGAGAGTGTTGGAGAAGGAGTGAAAGATCTTCAACCAGGAGATCATGTTCTTCCTGTTTTCACTGGTGAATGTGGGGAATGTCGTCATTGTCAATCTGAAGAAAGCAATATGTGCGATCTCCTTCGAATCAATACTGATCGTGGAGTTATGATCAATGATGGAAAGACTAGATTCTCCAAAAATGGACAACCCATTCATCATTTTGTTGGAACCTCCACTTTTAGTGAATACACTGTTGTTCATTTTGGCTGTTTAGCTAAGATCAATCCTGCTGCTCCTCTTGACAAAGTTTGTGTTCTTAGCTGCGGCATTTCCACAGGCCTTGGTGCCACTTTGAATGTTGCAAAGCCTAAAAAAGGTCAATGTGTTGCAATCTTTGGACTTGGAGCTGTTGGACTTGCTGCTGCTGAAGGAGCAAGAATTGCTGGAGCATCTAGGATCATTGGTGTTGATTTGAACCCAGCTCGATTTGAAGAAGCAAAGAAATTTGGTTGCAATGAATTTGTGAATCCAAAGGACCACAACAAGCCAGTTCAGGAGGTGATTGCTGAGATGACGAATGGAGGAGTCGACCGCAGCGTCGAATGCACTGGAAGCATCCAAGCAATGATCTCAGCATTCGAATGCGTTCACGATGGGTGGGGTGTTGCTGTACTTGTGGGAGTTCCAAACAAAGATGATGCATTCAAAACTCATCCTATGAATCTCCTTAACGAAAGAACTCTAAAGGGTACCTTCTTCGGCAACTATAAACCTCGATCCGACATTCCCGGGGTCGTGGAGAAGTACTTGAAGAAGGAGCTCGAATTGGAGAAGTTCATTACACATACAGTGCCATTTTCTGAGATCAACAAGGCGTTTGATTACATGCTGAAAGGGGAGTCGATTCGATGCATTATTAAGATGGAAAACTGA 1143 44.53 MSSTAGQVIKCKAAVAWEAGKPLVIEEVEVAPPQANEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVKDLQPGDHVLPVFTGECGECRHCQSEESNMCDLLRINTDRGVMINDGKTRFSKNGQPIHHFVGTSTFSEYTVVHFGCLAKINPAAPLDKVCVLSCGISTGLGATLNVAKPKKGQCVAIFGLGAVGLAAAEGARIAGASRIIGVDLNPARFEEAKKFGCNEFVNPKDHNKPVQEVIAEMTNGGVDRSVECTGSIQAMISAFECVHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDIPGVVEKYLKKELELEKFITHTVPFSEINKAFDYMLKGESIRCIIKMEN 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 9509336 9511509 + ClCG09G009760.1 Cla09g00911 280331

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g00911 380 PANTHER ALCOHOL DEHYDROGENASE 1 4 378 - -
Cla09g00911 380 CDD alcohol_DH_plants 9 376 - -
Cla09g00911 380 Pfam Zinc-binding dehydrogenase 206 334 IPR013149 -
Cla09g00911 380 Gene3D - 183 321 - -
Cla09g00911 380 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 169 341 IPR036291 -
Cla09g00911 380 SUPERFAMILY GroES-like 4 187 IPR011032 -
Cla09g00911 380 PANTHER ALCOHOL DEHYDROGENASE 4 378 - -
Cla09g00911 380 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 69 83 IPR002328 GO:0008270|GO:0016491
Cla09g00911 380 SUPERFAMILY GroES-like 328 376 IPR011032 -
Cla09g00911 380 Pfam Alcohol dehydrogenase GroES-like domain 36 157 IPR013154 -
Cla09g00911 380 Gene3D - 19 370 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g00911 K18857 ADH1; alcohol dehydrogenase class-P [EC:1.1.1.1] - csv:101206036 713.375
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01442 Cla-Chr1:28902466 Cla09g00911 Cla-Chr9:9509336 1.15E-147 dispersed
Cla06g00126 Cla-Chr6:1403053 Cla09g00911 Cla-Chr9:9509336 3.35E-169 dispersed
Cla08g01126 Cla-Chr8:24002712 Cla09g00911 Cla-Chr9:9509336 6.91E-102 dispersed
Cla09g00911 Cla-Chr9:9509336 Cla05g01605 Cla-Chr5:27322767 2.32E-14 dispersed
Cla09g00911 Cla-Chr9:9509336 Cla09g00912 Cla-Chr9:9527379 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi7g655 . . . . Bpe03g00931 . . . . . . . . . . Cpe17g00966 . . . . . . . . Cla09g00911 Cam09g0963 Cec09g0968 Cco09g0974 . . Cre09g0932 . . . . Lsi02g02009 Csa07g01410 . . . . Bda05g00876 . . . . . Sed14g0049 . . . Cma17g01364 Car08g00042 Car17g01262 . Cpe12g01165 Bhi12g02320 Tan06g1380 Cmetu09g0569 . Hepe03g1217 . . . . . . . . . . . . .
Vvi18g1208 . . . . . . . . . . . . Car01g00888 . . . . . . . . . . . . . . . . . . . . Cone17ag0800 Cone20ag0404 . . . . Blo17g00721 Blo18g00224 Bda08g01180 Bda13g01537 Bpe02g01599 Bpe14g00328 . Bma05g00197 Sed07g2855 Cmo01g01036 . . . . . . Cpe02g00894 Bhi09g01486 Tan01g3358 Cmetu01g1438 . Hepe03g1217 Mch11g1415 . Cla09g00911 Cam09g0963 Cec09g0968 Cco09g0974 . . Cre09g0932 . . Chy03g00638 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000873 1 4 2 1 2 2 2 2 2 3 2 2 3 3 4 4 2 6 5 2 4 2 1 3 4 2 2 5 6 6 89
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla09g00911 Cla_Chr09 FPKM 9.21875 8.092047 42.640644 47.947948 357.931549 342.815704 371.862396 36.276089 35.124241 36.025585