Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g00912 ATGGAGAGAAAGTTGGTGGAGTCTCTTATGAATAGTTTTCTTGAACATTTTCCTTCTCTTTGTGTTACAGCTGCTGTGGCATGGGAGGCTGGAAAGCCACTGGTTATTGAGGAAGTGGAAGTAGCACCACCACAAGCTAATGAAGTCCGTGTCAAAATCCTCTTCACTGCTCTTTGCCACACTGATGTTTACTTTTGGGAAGCCAAAGGCCAAACACCTCTCTTTCCTCGCATATTTGGACATGAAGCCGGAGGAATTGTGGAGAGTGTAGGAGAGGGTGTGACAGATCTTCAGCCAGGAGACCATGTTCTTCCTGTATTCACTGGTGAATGCGGGGATTGTCGCCATTGTCGATCGGAAGAGAGCAACATGTGTGATCTTCTCCGAATCAACACCGACCGTGGTGTTATGATCAATGATGGCAAGTCAAGGTTCTCTATAAATGGACAGCCAATCCACCACTTTGTCGGTACCTCTACGTTTAGCGAATTCACTGTTGTTCATGTTGGCTGTCTGGCCAAGATCAACCCGGCTGCGCCTCTTGACAAAGTTTGTGTTCTTAGCTGTGGCATATCCACAGGGCTTGGTGCCACTTTGAATGTTGCAAAGCCAAAAAAGGGTTCATGTGTTGCGATCTTTGGACTTGGAGCTGTTGGCCTTGCAGCTGCTGAAGGAGCAAGAATTGCTGGCGCATCCAGGATTATTGGTGTTGATCTGAATCCAAGTAGATTCGAAGAAGCGAAGAAATTTGGTTGCAACGAGTTTGTGAATCCAAAGGATCACAAGAAGCCTGTTCAGGAGGTGATTGCGGAGATGACCGATGGAGGAGTGGACCGGAGTGTGGAATGCACCGGAAGCATTCAGGCAATGATCTCAGCATTCGAATGTGTCCACGATGGTTGGGGTGTTGCGGTACTGGTGGGAGTGCCGAACAAAGACGATGCATTCAAAACTCATCCAATGAATCTCCTGAATGAGAGGACTCTGAAGGGTACCTTCTTTGGAAACTACAAACCGCGAACCGACATTCCTGGGGTGGTGGAACAGTACTTGAAGAAGGAGCTGGAATTGGAGAAGTTCATAACACATTCAGTCCCATTTTCTGATATAAACAAAGCATTTGATTACATGCTGAAGGGGGAATCAATCCGTTGTATTATAAGGATGGGAGAGTGA 1176 46.85 MERKLVESLMNSFLEHFPSLCVTAAVAWEAGKPLVIEEVEVAPPQANEVRVKILFTALCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTDLQPGDHVLPVFTGECGDCRHCRSEESNMCDLLRINTDRGVMINDGKSRFSINGQPIHHFVGTSTFSEFTVVHVGCLAKINPAAPLDKVCVLSCGISTGLGATLNVAKPKKGSCVAIFGLGAVGLAAAEGARIAGASRIIGVDLNPSRFEEAKKFGCNEFVNPKDHKKPVQEVIAEMTDGGVDRSVECTGSIQAMISAFECVHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRTDIPGVVEQYLKKELELEKFITHSVPFSDINKAFDYMLKGESIRCIIRMGE 391
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 9527379 9529457 - ClCG09G009780.1 Cla09g00912 280332

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g00912 391 CDD alcohol_DH_plants 24 388 - -
Cla09g00912 391 PANTHER ALCOHOL DEHYDROGENASE 1 22 389 - -
Cla09g00912 391 Gene3D - 30 381 - -
Cla09g00912 391 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 180 352 IPR036291 -
Cla09g00912 391 SUPERFAMILY GroES-like 339 388 IPR011032 -
Cla09g00912 391 Pfam Zinc-binding dehydrogenase 217 344 IPR013149 -
Cla09g00912 391 PANTHER ALCOHOL DEHYDROGENASE 22 389 - -
Cla09g00912 391 SUPERFAMILY GroES-like 21 197 IPR011032 -
Cla09g00912 391 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 80 94 IPR002328 GO:0008270|GO:0016491
Cla09g00912 391 Gene3D - 194 332 - -
Cla09g00912 391 Pfam Alcohol dehydrogenase GroES-like domain 47 151 IPR013154 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g00912 K18857 ADH1; alcohol dehydrogenase class-P [EC:1.1.1.1] - csv:101209854 702.205
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla09g00911 Cla-Chr9:9509336 Cla09g00912 Cla-Chr9:9527379 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi7g654 . . . . . . . . Cmo08g00048 . . . . . . . . . . . . . . . Cla09g00912 Cam09g0964 Cec09g0969 Cco09g0975 . . Cre09g0933 . . . . Lsi02g02008 Csa07g01409 . . . . . . . . . . . . . Cma08g00048 . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1210 Blo01g01328 . Bda01g00693 . Bpe02g00613 . . . . . Cma01g00998 Cma09g01088 . . . Cpe06g00889 . . . . . . . . . . . . . . . . . . Cone20ag0403 . . . . . . . . . . Bma01g00875 . . Cmo01g01034 Cmo09g01096 . . . Car09g00986 . Cpe02g00897 Bhi09g01488 Tan01g3362 Cmetu01g2220 . . Mch11g1416 . Cla09g00912 Cam09g0964 Cec09g0969 Cco09g0975 . . Cre09g0933 . . Chy03g00637 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000873 1 4 2 1 2 2 2 2 2 3 2 2 3 3 4 4 2 6 5 2 4 2 1 3 4 2 2 5 6 6 89
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla09g00912 Cla_Chr09 FPKM 5.571918 6.32071 9.534735 8.521834 12.698627 12.456027 12.96775 8.901382 10.668463 11.54899