Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g00915 ATGGAAATAATGGTGGCGCATCATAATTTAAAAAATGGGAAAGCAAGAACAAATTACCTACGCTCATGTTTGAACCAAGTTTTGATAATCCCCTGCCTCCTCCTCACATTGCTCATTGCCATCGCTTGCACCTACACACTCCTCTTTCCAAACATCCACGAAATCCTTCAGATCTACAACTTCACCGCAACATCCCAAAGCATAAAAAGCAGTAGAAGCACCGAATCCGTCGATTGCAACGTGTTCGATGGACAGTGGGTGGAAGACAACTCCAGGTACCCCATTTACAACTCGACGAATTGTCCATTCGCAGAGAGAGGTTTCAATTGCTTTGAAAATGGACGGAAGGATAAGGAGTATTTGAGATGGCGGTGGAAGCCAAAGGAGTGTGACATTTCCAGGTTTGATGCTGGAAAAGCGTTGGAGATGTTGCGAGGGAAGCGGGTGGTGTTCGTTGGAGACTCGCAGAGTCGAACGCAGTGGGAATCGTGGATTTGCATGTTGATGGAGGGAGTGAAGAAGAAGGAAAGCGTATATGAGATCAATGGGAGTGGGATAACAAAGACTATTAGGCATTTAGGAGTGAGATTTAGAGATCATAATATCACTGTGGATTTCTATAGGTCTGTGTTCTTAATGAAGAAAGATTATAAGGTGCCTGCGGGTACACCCACGAACGTTAGGATGATAGTTCGATTGGATCAGGTGGATGATATTAGTCATCAGTGGGTTGATTCTGATTTGTTGGTTTTTAATACCGGTGGTTGGTGGACCCAAAATCGACTTTTCAATGAGATGAGGTGTTTCTTCCAAATAAGGGACTCATTGGAACTTGGAATGTCTGTGATGGATGGGTACAAGATGGCATTAAATACTTGGGCTGATTGGGCTGAAGCTAATATCAACCCCAATAGAACCACTGTTTTCTTTCGCACTATTGAATATTCTACTCATTTGAGAGGTCCTAATCATTGCGATGAGAGTCAACAACCATTGAAAGAAACAAAAGGGAGAGACAAGAATAAAAAATCAGACATAATAATGGAGGTTTTGAAGAAGAAGATGAAGAGAGTTGCAGTGAAAGTGATGCATTTAACTCCAATGGGATCTTACAGAAGTGATGCCCATGTGGGAAATTGGGGTGACAATCCTTCTGTACAAGATTGCGGTCATTGGTGTCTTCCCGGCTTACCTGATATTTGGAATGAAATTCTCTTATCTTATTTTCTCCCTAAAACATTCTCTTTTAGTTCTAACTAG 1260 42.06 MEIMVAHHNLKNGKARTNYLRSCLNQVLIIPCLLLTLLIAIACTYTLLFPNIHEILQIYNFTATSQSIKSSRSTESVDCNVFDGQWVEDNSRYPIYNSTNCPFAERGFNCFENGRKDKEYLRWRWKPKECDISRFDAGKALEMLRGKRVVFVGDSQSRTQWESWICMLMEGVKKKESVYEINGSGITKTIRHLGVRFRDHNITVDFYRSVFLMKKDYKVPAGTPTNVRMIVRLDQVDDISHQWVDSDLLVFNTGGWWTQNRLFNEMRCFFQIRDSLELGMSVMDGYKMALNTWADWAEANINPNRTTVFFRTIEYSTHLRGPNHCDESQQPLKETKGRDKNKKSDIIMEVLKKKMKRVAVKVMHLTPMGSYRSDAHVGNWGDNPSVQDCGHWCLPGLPDIWNEILLSYFLPKTFSFSSN 419
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 9540657 9543146 + ClCG09G009810.2 Cla09g00915 280335

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g00915 419 MobiDBLite consensus disorder prediction 321 341 - -
Cla09g00915 419 PANTHER PROTEIN TRICHOME BIREFRINGENCE-LIKE 9-RELATED 27 410 IPR029962 GO:0016413
Cla09g00915 419 PANTHER PROTEIN TRICHOME BEREFRINGENCE-LIKE 7 27 410 IPR029964 -
Cla09g00915 419 MobiDBLite consensus disorder prediction 327 341 - -
Cla09g00915 419 Pfam PMR5 N terminal Domain 78 131 IPR025846 -
Cla09g00915 419 Pfam GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p 133 407 IPR026057 GO:0016740
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g00915 - - - csv:101210098 691.034
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla09g00915 Cla-Chr9:9540657 Cla10g01089 Cla-Chr10:25102540 4.08E-76 dispersed
Cla09g00914 Cla-Chr9:9536831 Cla09g00915 Cla-Chr9:9540657 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1212 . . . . . . . . . . . . Car01g00885 . . . . . . . . . . . . . . . . . . Cone4ag1521 . . . . . . . . . . . . . . . . Cmo01g01032 . . . . . . Cpe02g00898 Bhi09g01514 . . . . . . Cla09g00915 Cam09g0967 Cec09g0972 Cco09g0978 . . Cre09g0936 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008701 0 1 0 0 0 2 1 2 2 1 2 2 1 1 1 1 2 1 1 2 1 1 1 3 1 2 1 1 1 0 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla09g00915 Cla_Chr09 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 1.320904 0.527424 0.782492