Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla09g00917 | ATGTTCCCATTTTATAACGTAGAGAAAGAGAGAAGCGGACTCATTAACCCCGCGGCATGTGGAATGCGTCTCAATACTTTCACATGTTCTTCCGAACTTCCATCGTTCTTTAATCCAACCAATGTTGCCAGAATCACCTCGTATTCGATTCCAAATCGCGTAACTAACCAACAGTTAACCAAAAATGGCAATCCCTATTCAAAACTTCTACAAATTTGCTTGCAGCACTGCCGGAGAATCCAAGACCACAACCTGTTCGACGAAAACCCTGAACCAGTTTTTCAAGCATTGAGAACCGCGAAGGTCATCCATTCAAAGAGTTTGAAGATTGGAGTTGGGCTCAAAGGGTTGCTAGGTAATGCCGTTGTTGACCTTTATGTCAAATGCGGCAATGTGGATTTCGCTCAGAAGGCCTTTTCCCGGCTTGAGAAGAAGGATGTATTTGCCTGGAACTCGGTGCTTTCTATGTACTCCGAACACGGGTTGTTTGCAACTGTTGTTCAATCTTTTGGGTCTATGTGGAATCATGGGGTGCGGCCTAATGAGTTCACGTTTGCAATGGTTTTATCAGCTTGTTCTAGGTTGCAGGATGTTAACTATGGTAGACAAGTCCATTGTGGGGTTTTTAAGATGGGGTTTGGGGTTCGTTCTTTTTGTCAAGGTGGGCTGATTGATATGTATGCCAAATGCCGTAATCTTAGAGATGCTCGCTTGGTGTTTGACGGGGCACTTGATTTGGATACTGTTTCATCGACAGCCTTGATTGCAGGGTATGTTCGAGATGGCTTCCCTGAGGAGGCAGTCAAGGTGTTTGATAGAATGCAGAGAGTTGGACATGTACCTGATCAGGTTGCGCTTGTAACTGTTATAAATGCTTATGTGGCTCTTGATAGGCTTGGTGATGCTCGTAAGTTGTTTGCCCAGATGCTCAGTCCTAATATTGTAGCTTGGAATGTGATGATTTCAGCGCATGCTAAGAGAGGATTTGCAGAGGAAGCGATTACATTTTTTCTTGAATTGAAGAGAAATGGCCTAAAAGCCACTAGATCTACTCTAGGAAGTGTTTTAAGTGCAATTGCTAATTTATCGATGCTTAAATATGGCTTAATGGTTCATGCTCAGGTGACTAAGGAAGGGTTCAACGATAATGTGTATGTAGGAAGTGCATTGGTGAACATGTATGCCAAATGTTCAAAAATGGATGCTGCAAAACAATTGTTCAATTCTATAGATGAGAGAAATATCGTCTTGTGGAATGCTATGCTTGGAGGTTTTGCGCAGAACGGACTTGCCCATGAAGTGATGGAATTTTTCTCATATATGAAACGACATGGACCTCAGCCTGATGAGTTTACTTTCACTAGTATTTTCAGTGCATGTGCCTCCTTGCAGAATCTTGATTTCGGTCGTCAACTTCATACTGTTATGATCAAGAACAAGTTTGCATCTAATCTATTTGTTGCAAATGCGTTGGTAGACATGTATGCTAAGTCAGGGGCTTTAAACGAAGCAAGAAAACAATTTGAGTTGATGAAAATGCATGACAATGTTTCATGGAATGCAATAATTGTGGGGTATGTGCAGGAAGAGTATAACGATGAGGCTTTCTTCATGTTTCGAAGAATGGTTTCCAATGGGACTCTTCCAGATGAGGTATCTTTGGCCAGTATAGTGAGTGCTTGTGCAAAAGTTCAGGAGTTTAAACGAGGCCAACAATGTCACTGTCTCTTAGTTAAAGTTGGTTTAGATACAAGAATTTGTGCTGGGAGTTCCCTCATTGACATGTATGTCAAGTGCGGTGTTCTTTCGGCAGCTCGTGATGTCTTTTCTTCTATGCCCTCTAAAAGTGTTGTCTCAGTAAATGCTCTGATTGCTGGCTACACCATGAACCACTTAGAGGAAGCTATTTCTCTATTTCAAGAGATGCAGATGGTTGGACTTAAACCTACAGATGTGACATTTGCAGAGCTTTTAGATGGATGTGATGGAGCATCTATGCTGAAACTTGGAAGGCAAATTCACTGTCAAATTATGAAGTGGGGTTTTCTATTCGGTAGTGAAATGGTGTGCGTCTCTCTTTTGTGCATGTATATGAACTCCCAAAGACTCTCAGACTCGGAAACACTCTTCTCTGAGTTGCAGTATCCAAAAGGTTTAGTTTTATGGACTGCTTTCATTTCAGGATATGCTCAAAACAATCACTACGAGAAGGCTTTGCGATTCTATCAACATATGCGATCTGAGAATATCTTACCTGACCAAGCAACATTTGCCAGTGTTCTTCGAGCATGTGCTGGATTGTCTTCTCTAGAAAACGGTCAAGAGATTCATTCCCTTATCTTCCATACTGGCTTTAACATGGATGAAATAACTTGTAGTTCCCTTATAGATATGTATGCAAAATGTGGTGATGTTAAAAGCTCTGTTCAAGTTTTTCATGAAATGCATCTTAAAAAAAGTGTCATATCATGGAACTCCATGATAGTTGGACTTGCAAAGAATGGGTATGCAGAAGAAGCACTTCAAATATTCAGGCAAATGGAGCAACAATCCATCATACCTGATGAAGTCACATTCCTTGGTGTTCTATCTGCTTGTAGCCATGCTGGGCGAGTGTTGGAAGGCCGAAAGATATTCAACCTGATGGTTAACCGTTACAGGTTACAGCCAAGAGTTGACCATTTGGGGTGTATGGTAGACATTCTTGGGAGATGGGGTTTTCTTAATGAAGCAGAGGAGTTCATTAATAGGCTTGGATGTAAAGCAGATCCAATGCTGTGGTCCACTTTGCTAGGAGCTTGTAGAAAACATGGAGATGAAGTTAGGGGGAAGCGTGCAGCTGAGAAACTTATGGAACTGAAACCACAAAGTTCTTCATCCTATGTGCTGCTGTCTAGCATATACGCTGCATCAGAGAATTGGAAACGAGCTGACTCTTTAAGGAAGGAAATGAAGCTAAAGGGAGTGAAAAAGTTGCCCGGATATAGCTGGATAGAACCAGGAAGAGACATACGAGGCAGCTTCATACACGATTCGAGAGGGTAG | 3045 | 41.84 | MFPFYNVEKERSGLINPAACGMRLNTFTCSSELPSFFNPTNVARITSYSIPNRVTNQQLTKNGNPYSKLLQICLQHCRRIQDHNLFDENPEPVFQALRTAKVIHSKSLKIGVGLKGLLGNAVVDLYVKCGNVDFAQKAFSRLEKKDVFAWNSVLSMYSEHGLFATVVQSFGSMWNHGVRPNEFTFAMVLSACSRLQDVNYGRQVHCGVFKMGFGVRSFCQGGLIDMYAKCRNLRDARLVFDGALDLDTVSSTALIAGYVRDGFPEEAVKVFDRMQRVGHVPDQVALVTVINAYVALDRLGDARKLFAQMLSPNIVAWNVMISAHAKRGFAEEAITFFLELKRNGLKATRSTLGSVLSAIANLSMLKYGLMVHAQVTKEGFNDNVYVGSALVNMYAKCSKMDAAKQLFNSIDERNIVLWNAMLGGFAQNGLAHEVMEFFSYMKRHGPQPDEFTFTSIFSACASLQNLDFGRQLHTVMIKNKFASNLFVANALVDMYAKSGALNEARKQFELMKMHDNVSWNAIIVGYVQEEYNDEAFFMFRRMVSNGTLPDEVSLASIVSACAKVQEFKRGQQCHCLLVKVGLDTRICAGSSLIDMYVKCGVLSAARDVFSSMPSKSVVSVNALIAGYTMNHLEEAISLFQEMQMVGLKPTDVTFAELLDGCDGASMLKLGRQIHCQIMKWGFLFGSEMVCVSLLCMYMNSQRLSDSETLFSELQYPKGLVLWTAFISGYAQNNHYEKALRFYQHMRSENILPDQATFASVLRACAGLSSLENGQEIHSLIFHTGFNMDEITCSSLIDMYAKCGDVKSSVQVFHEMHLKKSVISWNSMIVGLAKNGYAEEALQIFRQMEQQSIIPDEVTFLGVLSACSHAGRVLEGRKIFNLMVNRYRLQPRVDHLGCMVDILGRWGFLNEAEEFINRLGCKADPMLWSTLLGACRKHGDEVRGKRAAEKLMELKPQSSSSYVLLSSIYAASENWKRADSLRKEMKLKGVKKLPGYSWIEPGRDIRGSFIHDSRG | 1014 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 9553752 | 9558978 | + | ClCG09G009830.2 | Cla09g00917 | 280337 |
Annotation
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla09g00917 | 1014 | Pfam | E motif | 939 | 999 | IPR046848 | - | |
| Cla09g00917 | 1014 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 414 | 448 | IPR002885 | - | |
| Cla09g00917 | 1014 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 313 | 347 | IPR002885 | - | |
| Cla09g00917 | 1014 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 515 | 549 | IPR002885 | - | |
| Cla09g00917 | 1014 | TIGRFAM | PPR: pentatricopeptide repeat domain | 822 | 856 | IPR002885 | - | |
| Cla09g00917 | 1014 | TIGRFAM | PPR: pentatricopeptide repeat domain | 790 | 822 | IPR002885 | - | |
| Cla09g00917 | 1014 | TIGRFAM | PPR: pentatricopeptide repeat domain | 517 | 551 | IPR002885 | - | |
| Cla09g00917 | 1014 | TIGRFAM | PPR: pentatricopeptide repeat domain | 315 | 347 | IPR002885 | - | |
| Cla09g00917 | 1014 | TIGRFAM | PPR: pentatricopeptide repeat domain | 252 | 282 | IPR002885 | - | |
| Cla09g00917 | 1014 | TIGRFAM | PPR: pentatricopeptide repeat domain | 720 | 753 | IPR002885 | - | |
| Cla09g00917 | 1014 | TIGRFAM | PPR: pentatricopeptide repeat domain | 416 | 450 | IPR002885 | - | |
| Cla09g00917 | 1014 | PANTHER | OS07G0578800 PROTEIN-RELATED | 784 | 1002 | IPR045215 | GO:0003723|GO:0009451 | |
| Cla09g00917 | 1014 | PANTHER | OS07G0578800 PROTEIN-RELATED | 514 | 614 | IPR045215 | GO:0003723|GO:0009451 | |
| Cla09g00917 | 1014 | PANTHER | OS07G0578800 PROTEIN-RELATED | 688 | 780 | IPR045215 | GO:0003723|GO:0009451 | |
| Cla09g00917 | 1014 | PANTHER | OS07G0578800 PROTEIN-RELATED | 613 | 685 | IPR045215 | GO:0003723|GO:0009451 | |
| Cla09g00917 | 1014 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 788 | 818 | IPR002885 | - | |
| Cla09g00917 | 1014 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 718 | 752 | IPR002885 | - | |
| Cla09g00917 | 1014 | PANTHER | OS07G0578800 PROTEIN-RELATED | 107 | 513 | IPR045215 | GO:0003723|GO:0009451 | |
| Cla09g00917 | 1014 | Pfam | PPR repeat | 489 | 513 | IPR002885 | - | |
| Cla09g00917 | 1014 | Pfam | PPR repeat | 790 | 816 | IPR002885 | - | |
| Cla09g00917 | 1014 | Gene3D | Tetratricopeptide repeat domain | 51 | 211 | IPR011990 | GO:0005515 | |
| Cla09g00917 | 1014 | Gene3D | Tetratricopeptide repeat domain | 364 | 466 | IPR011990 | GO:0005515 | |
| Cla09g00917 | 1014 | Gene3D | Tetratricopeptide repeat domain | 467 | 580 | IPR011990 | GO:0005515 | |
| Cla09g00917 | 1014 | Gene3D | Tetratricopeptide repeat domain | 212 | 363 | IPR011990 | GO:0005515 | |
| Cla09g00917 | 1014 | Gene3D | Tetratricopeptide repeat domain | 837 | 1004 | IPR011990 | GO:0005515 | |
| Cla09g00917 | 1014 | Gene3D | Tetratricopeptide repeat domain | 581 | 673 | IPR011990 | GO:0005515 | |
| Cla09g00917 | 1014 | Gene3D | Tetratricopeptide repeat domain | 674 | 801 | IPR011990 | GO:0005515 | |
| Cla09g00917 | 1014 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 820 | 854 | IPR002885 | - | |
| Cla09g00917 | 1014 | Pfam | PPR repeat family | 312 | 360 | IPR002885 | - | |
| Cla09g00917 | 1014 | Pfam | PPR repeat family | 819 | 867 | IPR002885 | - | |
| Cla09g00917 | 1014 | Pfam | PPR repeat family | 247 | 293 | IPR002885 | - | |
| Cla09g00917 | 1014 | Pfam | PPR repeat family | 145 | 193 | IPR002885 | - | |
| Cla09g00917 | 1014 | Pfam | PPR repeat family | 515 | 563 | IPR002885 | - | |
| Cla09g00917 | 1014 | Pfam | PPR repeat family | 615 | 661 | IPR002885 | - | |
| Cla09g00917 | 1014 | Pfam | PPR repeat family | 413 | 461 | IPR002885 | - | |
| Cla09g00917 | 1014 | Pfam | PPR repeat family | 719 | 765 | IPR002885 | - | |
| Cla09g00917 | 1014 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 247 | 281 | IPR002885 | - | |
| Cla09g00917 | 1014 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 146 | 180 | IPR002885 | - | |
| Cla09g00917 | 1014 | PANTHER | OSJNBB0070J16.5 PROTEIN | 514 | 614 | - | - | |
| Cla09g00917 | 1014 | PANTHER | OSJNBB0070J16.5 PROTEIN | 688 | 780 | - | - | |
| Cla09g00917 | 1014 | PANTHER | OSJNBB0070J16.5 PROTEIN | 107 | 513 | - | - | |
| Cla09g00917 | 1014 | PANTHER | OSJNBB0070J16.5 PROTEIN | 613 | 685 | - | - | |
| Cla09g00917 | 1014 | PANTHER | OSJNBB0070J16.5 PROTEIN | 784 | 1002 | - | - |
Pathway
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla09g00917 | - | - | - | cmax:111473755 | 1719.52 |
Dupl-types
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla09g00917 | Cla-Chr9:9553752 | Cla05g00861 | Cla-Chr5:8519771 | 5.21E-29 | dispersed | |
| Cla09g00917 | Cla-Chr9:9553752 | Cla09g00659 | Cla-Chr9:6258153 | 4.46E-59 | transposed |
Deco-Alignment
| Select | Vvi1 | Blo1 | Blo2 | Bda1 | Bda2 | Bpe1 | Bpe2 | Bma1 | Bma2 | Cmo1 | Cmo2 | Cma1 | Cma2 | Car1 | Car2 | Sed1 | Cpe1 | Cpe2 | Bhi1 | Tan1 | Cmetu1 | Lac1 | Hepe1 | Mch1 | Lcy1 | Cla1 | Cam1 | Cec1 | Cco1 | Clacu1 | Cmu1 | Cre1 | Cone1 | Cone2 | Cone3 | Cone4 | Lsi1 | Csa1 | Chy1 | Cme1 | Blo3 | Blo4 | Bda3 | Bda4 | Bpe3 | Bpe4 | Bma3 | Bma4 | Sed2 | Cmo3 | Cmo4 | Cma3 | Cma4 | Car3 | Car4 | Cpe3 | Cpe4 | Bhi2 | Tan2 | Cmetu2 | Lac2 | Hepe2 | Mch2 | Lcy2 | Cla2 | Cam2 | Cec2 | Cco2 | Clacu2 | Cmu2 | Cre2 | Lsi2 | Csa2 | Chy2 | Cme2 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Vvi18g1213 | . | Blo12g01108 | . | Bda03g00030 | . | Bpe04g00020 | Bma04g00028 | . | . | Cmo12g00334 | . | Cma09g01089 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | Cmo09g01097 | . | . | . | Car09g00987 | . | . | Bhi09g01512 | . | . | . | . | . | . | Cla09g00917 | . | . | . | . | . | . | . | . | . | . |
Syn-Orthogroups
| Select | Orthogroup | Bda | Bhi | Blo | Bma | Bpe | Cam | Car | Cco | Cec | Chy | Cla | Clacu | Cma | Cme | Cmetu | Cmo | Cmu | Cone | Cpe | Cre | Csa | HCH | Hepe | Lac | Lcy | Lsi | Mch | Sed | Tan | Vvi | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OG0011120 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 0 | 0 | 1 | 1 | 0 | 1 | 1 | 3 | 1 | 0 | 1 | 0 | 1 | 27 |
Transcriptome
| Select | Gene | Chr | Type | da1 | da2 | da3 | da4 | da5 | da6 | da7 | da8 | da9 | da10 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Cla09g00917 | Cla_Chr09 | FPKM | 0.034364 | 0.0 | 0.327881 | 0.048804 | 0.0 | 0.149172 | 0.230121 | 0.513605 | 0.079799 | 0.168149 |