Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g00924 ATGGCAGATCTTGTTAGCTACGGGAATGCCAACCGTGACACTGAGCAGGCACTAATTGCTTTGAAGAAGGGTTCTCAACTCCTCAAGTATGGTCGTAAAGGGAAACCAAAATTTTGTCCATTTAGACTTTCTAATGATGAGTCATCTTTAATTTGGATTTCAACTACTGGTGAAAAGAGTTTGAAGTTAGCTTCTGTATCGAGAATTATTCCTGGACAAAGAACTGCTGTGTTCCAACGATATCTACGACCTGAGAAGGATTATTTATCATTTTCTCTGATTTACAACAATGGAAAACGGTCTCTTGATCTGATTTGTAAGGATAAAGTCGAGGCTGAAATTTGGATAGCGGGTCTGAAAGCATTAGTTGGTTCTGGTGATGGTGGGCGTTCTAAGATTGATGGATGGAATGATGGAGGCCTCTATCAAGATATCTGTGTCATTGAGATTGTGATTGCTGTCACTTCTCGTGCTGTTAGATTCAGAATTTTTAGTGCTCATGCCATAAAAAGTCGTTATAAAATTCTCTTGCATATTCCTTTATCAATGCTGTTGAATTTATTTCAGGACAACAGTGACTTAACTTCAAGTAGCCCAAGTGACAGCTCCAATAGTGTCACTAGAGATATTAGCTCTCCTGAGGTCTGTGTTACTTTTAGTCCAAACAAATCTCCAACGAGTGTTAGGTCTGAGAACTCTACAAGGTCACATGTGCCATTGAACCAGACAAATATGCAAGCTAAAGGATCTAGTTCAGATATTTTTCGAGTTAGTGTTTCAAGTGCTCCTAGCTCCTCCAGTCATGGCTCTACGCCAGATGACTGTGATGCTCTAGGAGATATATACATATGGGGTGAGGTTATTAGTGATAATTTTATGAAGCCTGGGGCTGATAGAGCTAGTAGTGTGAGCTCAAGGACAGATGTGCTACTTCCAAAGCCATTAGAGTCCAATATTGTTCTAGATGCACAACATATAGCCTGTGGTGTCAGGCATTCTGCGATAGTCACGAGGCAAGGGGAGGTCTTTACATGGGGTGAGGAATCTGGAGGAAGGCTTGGCCTGGGAATGGGGAAAGATGTAACACAACCTCGCCTTGTTGAAGCCTTGGCAGCTACTACAGTTGATCTTGTGGCATGTGGAGAGTTCCATACCTGTGCTGTTACAATGGATGGGGAGCTTTACACATGGGGAGATGGTGTACATAATGCTGGGCTTCTTGGTAATGGAACTGATGTCAGCCATTGGATGCCAAAGAGAATCTCAGGTATTCTTGAGGGGCTTCAAGTTGCATTTGTAGCATGTGGTCCGTGGCATACAGCGTTGATCTCATCTATGGGGCAACTATTCACCTTTGGCGATGGTACTTTTGGGGTTTTGGGTCATGGTGATAAAAAAAGCATTTCATATCCGAGAGAAGTGGAGTCCTTAACAGGCTTGAGGACAATTGCTGTTGCATGCGGAGTGTGGCATACCGCTGCTGTGGTAGAAGTAATGACACAATCTAGTACAAGCATCTCATCAGGTAAATTGTTTACATGGGGTGATGGAGACAAGAATCGTTTAGGACATGGAGACAGGGAACCCCGGCTTAAACCCACATGTGTTCCAGCACTAATTGACTACAATTTTCATAAAATTGCTTGTGGTCACAGCATAACTGTTGGATTGACAACATCAGGACAAGTTTTCACAGTTGGAAGTTCAGTTTATGGTCAACTTGGAAATCCCCTTGCTGATGGAAAGCAACCATGCTTGGTGGAAGATAAGCTTTCCGGGGAGTGTGCTGAAGAGGTTGCTTGTGGTGCGTATCATGTGATGGTACTTACCTCCAAAAATGAAGTTTATACATGGGGAAAAGGTGCAAATGGGAGGTTAGGCCATGGAGACGTTGAGGATCGGAAATCACCAACTTTGGTTGAATCTTTGAAGGATAAACATGTCAAAATCATTGCTTGTGGATCTAACTACTCCGCAGCTATTTGTCTACACAAATCATTGTCAGGCACAGAGCAGTCACAATGCTCTGCTTGTAGACAGGCATTTGGTTTCACAAGAAAGAGGCACAACTGTTACAACTGTGGACTTGTGCACTGCCACTCGTGTAGTTCCAAAAAAGCATTAAGAGCTGCCCTGGCTCCTACTCCTAGGAAATCTTATCGTGTATGTGATTCTTGTTATGCCAAATTGAGCAAGGCGTCAGAATCTGGAAGTAATTACCGGAAAAATGCTGTTCCCCGCCTGTCAGGTGAGAACAGGGACAAGCTGGACAAGAGTGACACAAGACCTCCTAAAACAGCACTTTCAAATATGGATCTGATAAAACAACTCGATAGCAAAGCAGCAAAGCAAGGGAAGAGAACAGATACATTCTCCATTGTTCGCCCCACTCAAGCACATACTCTTCTTCAACTCAAAGATGGTCCAAATACTGTTGATATTCGGCGACTAGCTCCCAAGCCAATTCCTATGGCTAATGGAGTAAATTCTAGATCTGTGTCACCTTTGTCAAGGAGATCTAGTCCGCCAAGGTCTGCTACACCTGTGCCTACAGCATCAGGACTTTCCTTCTCCAAAGGTATAGCGGATAGCTTGAAGAAAACAAACGAACTCTTAAATCAAGAGGTTCTAATGCTGCGTGCACAGGTTGAGAGCCTGAGGAAGAGATGTGAACTTCAAGAATTAGAACTTCGGAAGTCAGAGAAGAAAGCACAAGAAGCCATTGCATTGGCTGCAGAGGAATCTGCTAAATCCAAAGCGGCAAAAGAAGTTATTACATCACTAACTGCTCAGATTAAACATATGGCCGAAAGGTTACCTGATGGAGTAAAAATGGGTCTTCCTGGAATTAATGACTCTGAAAACATGAGACCATTGTATGTTCCGAATGGTATGGAGCAAAATGGTGCCCACCATTTAGCTTCCAATGGAGAGCGTCTTTCAGAATCAGATTCACACAGCTCCTTGTCCTTGGCTTCTTCAGTTGCAACTGATTATTCCTTGAGTAAAGGAATTCAAGGTCTAGCTAATGCATCTGGAGAGTTCCCTGCAAGTAATGAAACTAACTCAGCCTCAGAGCCAGGGCGATTTACCTCTGATGGGACATATGATGATCCAGATGTAAGACTCTCTTATGGTCATAGAGGTGTTTGGGAAAGCCGCCGCAGTAGCAGCATGTCAGAAGGAGCGGATAACTCGGGTCCTTTACTAGACAGTGAGAGTAACACAAGATCAAGAAGTTCTGCATTGCCAGGAAATGACAATCAAGTTGAGGCTGAATGGATTGAGCAATATGAACCTGGTGTCTACATAACTTTGACGGCACTTCGTAATGGGACTAGAGATCTTAAACGAGTGCGCTTCAGTCGGAGGCGATTTGGGGAGCACCAAGCAGAGAGTTGGTGGTCAGAAAATCGTGATAAAGTCTACGAGAAATATAATGTTCGTGGAACCGAAAAATCCTCAATTTCTCCAAGTCCTCCATGA 3486 43.46 MADLVSYGNANRDTEQALIALKKGSQLLKYGRKGKPKFCPFRLSNDESSLIWISTTGEKSLKLASVSRIIPGQRTAVFQRYLRPEKDYLSFSLIYNNGKRSLDLICKDKVEAEIWIAGLKALVGSGDGGRSKIDGWNDGGLYQDICVIEIVIAVTSRAVRFRIFSAHAIKSRYKILLHIPLSMLLNLFQDNSDLTSSSPSDSSNSVTRDISSPEVCVTFSPNKSPTSVRSENSTRSHVPLNQTNMQAKGSSSDIFRVSVSSAPSSSSHGSTPDDCDALGDIYIWGEVISDNFMKPGADRASSVSSRTDVLLPKPLESNIVLDAQHIACGVRHSAIVTRQGEVFTWGEESGGRLGLGMGKDVTQPRLVEALAATTVDLVACGEFHTCAVTMDGELYTWGDGVHNAGLLGNGTDVSHWMPKRISGILEGLQVAFVACGPWHTALISSMGQLFTFGDGTFGVLGHGDKKSISYPREVESLTGLRTIAVACGVWHTAAVVEVMTQSSTSISSGKLFTWGDGDKNRLGHGDREPRLKPTCVPALIDYNFHKIACGHSITVGLTTSGQVFTVGSSVYGQLGNPLADGKQPCLVEDKLSGECAEEVACGAYHVMVLTSKNEVYTWGKGANGRLGHGDVEDRKSPTLVESLKDKHVKIIACGSNYSAAICLHKSLSGTEQSQCSACRQAFGFTRKRHNCYNCGLVHCHSCSSKKALRAALAPTPRKSYRVCDSCYAKLSKASESGSNYRKNAVPRLSGENRDKLDKSDTRPPKTALSNMDLIKQLDSKAAKQGKRTDTFSIVRPTQAHTLLQLKDGPNTVDIRRLAPKPIPMANGVNSRSVSPLSRRSSPPRSATPVPTASGLSFSKGIADSLKKTNELLNQEVLMLRAQVESLRKRCELQELELRKSEKKAQEAIALAAEESAKSKAAKEVITSLTAQIKHMAERLPDGVKMGLPGINDSENMRPLYVPNGMEQNGAHHLASNGERLSESDSHSSLSLASSVATDYSLSKGIQGLANASGEFPASNETNSASEPGRFTSDGTYDDPDVRLSYGHRGVWESRRSSSMSEGADNSGPLLDSESNTRSRSSALPGNDNQVEAEWIEQYEPGVYITLTALRNGTRDLKRVRFSRRRFGEHQAESWWSENRDKVYEKYNVRGTEKSSISPSPP 1161
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 9632854 9640073 - ClCG09G009900.2 Cla09g00924 280344

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g00924 1161 MobiDBLite consensus disorder prediction 965 986 - -
Cla09g00924 1161 MobiDBLite consensus disorder prediction 827 857 - -
Cla09g00924 1161 PRINTS Chromosome condensation regulator RCC1 signature 449 463 IPR000408 -
Cla09g00924 1161 PRINTS Chromosome condensation regulator RCC1 signature 342 358 IPR000408 -
Cla09g00924 1161 PRINTS Chromosome condensation regulator RCC1 signature 392 408 IPR000408 -
Cla09g00924 1161 PRINTS Chromosome condensation regulator RCC1 signature 433 449 IPR000408 -
Cla09g00924 1161 PRINTS Chromosome condensation regulator RCC1 signature 608 629 IPR000408 -
Cla09g00924 1161 PRINTS Chromosome condensation regulator RCC1 signature 550 568 IPR000408 -
Cla09g00924 1161 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 392 446 IPR000408 -
Cla09g00924 1161 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 509 560 IPR000408 -
Cla09g00924 1161 MobiDBLite consensus disorder prediction 1012 1030 - -
Cla09g00924 1161 Pfam FYVE zinc finger 670 731 IPR000306 GO:0046872
Cla09g00924 1161 SUPERFAMILY RCC1/BLIP-II 278 665 IPR009091 -
Cla09g00924 1161 Pfam Pleckstrin homology domain 15 124 IPR001849 -
Cla09g00924 1161 MobiDBLite consensus disorder prediction 1051 1085 - -
Cla09g00924 1161 SUPERFAMILY FYVE/PHD zinc finger 669 739 IPR011011 -
Cla09g00924 1161 MobiDBLite consensus disorder prediction 822 857 - -
Cla09g00924 1161 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 485 495 IPR000408 -
Cla09g00924 1161 MobiDBLite consensus disorder prediction 1012 1085 - -
Cla09g00924 1161 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 447 498 IPR000408 -
Cla09g00924 1161 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY WITH FYVE ZINC FINGER DOMAIN-CONTAINING PROTEIN 13 1149 - -
Cla09g00924 1161 MobiDBLite consensus disorder prediction 747 762 - -
Cla09g00924 1161 CDD PH_PLC_plant-like 12 123 - -
Cla09g00924 1161 CDD FYVE_like_SF 674 727 - -
Cla09g00924 1161 ProSiteProfiles BRX domain profile. 1092 1147 IPR013591 -
Cla09g00924 1161 Coils Coil 862 910 - -
Cla09g00924 1161 Pfam Transcription factor regulating root and shoot growth via Pin3 1091 1146 IPR013591 -
Cla09g00924 1161 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 613 664 IPR000408 -
Cla09g00924 1161 Gene3D - 12 127 IPR011993 -
Cla09g00924 1161 MobiDBLite consensus disorder prediction 215 250 - -
Cla09g00924 1161 Pfam Regulator of chromosome condensation (RCC1) repeat 447 495 IPR000408 -
Cla09g00924 1161 Pfam Regulator of chromosome condensation (RCC1) repeat 560 609 IPR000408 -
Cla09g00924 1161 Pfam Regulator of chromosome condensation (RCC1) repeat 391 443 IPR000408 -
Cla09g00924 1161 Pfam Regulator of chromosome condensation (RCC1) repeat 508 555 IPR000408 -
Cla09g00924 1161 Pfam Regulator of chromosome condensation (RCC1) repeat 340 388 IPR000408 -
Cla09g00924 1161 Pfam Regulator of chromosome condensation (RCC1) repeat 614 661 IPR000408 -
Cla09g00924 1161 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 340 391 IPR000408 -
Cla09g00924 1161 SMART fyve_4 663 732 IPR000306 GO:0046872
Cla09g00924 1161 Gene3D - 195 502 IPR009091 -
Cla09g00924 1161 SUPERFAMILY PH domain-like 13 123 - -
Cla09g00924 1161 MobiDBLite consensus disorder prediction 1033 1049 - -
Cla09g00924 1161 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 677 738 IPR013083 -
Cla09g00924 1161 Pfam Transcription factor BRX N-terminal domain 913 943 IPR027988 -
Cla09g00924 1161 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 13 1149 - -
Cla09g00924 1161 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 669 731 IPR017455 -
Cla09g00924 1161 MobiDBLite consensus disorder prediction 738 767 - -
Cla09g00924 1161 Gene3D - 503 676 IPR009091 -
Cla09g00924 1161 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 433 443 IPR000408 -
Cla09g00924 1161 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 561 612 IPR000408 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g00924 - - - csv:101214149 2056.95
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cla08g00677 Cla09g00924 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla09g00924 Cla-Chr9:9632854 Cla10g01306 Cla-Chr10:28000479 0 dispersed
Cla08g00677 Cla-Chr8:19059591 Cla09g00924 Cla-Chr9:9632854 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1250 Blo01g01332 Blo12g01105 Bda01g00698 Bda03g00034 Bpe02g00609 Bpe04g00023 Bma04g00032 Bma01g02116 Cmo04g02551 Cmo15g00619 Cma01g00988 . Car01g00880 . . Cpe06g00896 Cpe13g00670 . . . . . . . Cla08g00677 Cam08g1107 Cec08g0692 Cco08g0801 Clacu08g0813 . Cre08g0617 Cone4ag1510 Cone7ag1441 Cone17ag0794 Cone20ag0391 . . . Cme03g00380 Blo17g00217 Blo18g00216 . Bda13g01525 Bpe02g01605 Bpe14g00336 Bma01g00865 Bma02g00275 . Cmo01g01025 . . . Car04g02348 Car09g00994 Cpe01g02108 . Bhi09g01500 . . . . . . Cla09g00924 Cam09g0977 Cec09g0982 Cco09g0988 . . Cre09g0945 Lsi08g00535 . Chy03g00542 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000956 5 4 4 4 4 2 4 2 2 2 2 2 3 2 2 4 2 4 4 2 4 2 2 2 2 2 2 4 2 1 83
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla09g00924 Cla_Chr09 FPKM 1.419679 0.0 15.176767 22.555597 2.853874 2.918771 1.864222 7.14449 7.350488 9.667756