Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g00935 ATGTCCAGCGACAGCGACGACCTGGACGAGGATGAGCTGCTGCAGATGGCTCTCAAGGAGCAACAACAGCGCGATGTCAATTATCTCACTAATTCTCGTAAGCCCGTTGCTAATTACGTCCAACCGCCGTCTCAGTCCAGGAAATCGGCTTCTGCAGCTGCCGTTTCTAAAGCCAGTGGCAGTAATGCGCAGCCTAAGGGTGGTCGGAGGGTTGTCGACGACGACGACGATTCCGAGGTCGAGATGCTGAGCATTTCCAGTGGCGATGAGGATTCCACCAAAGATCATCGAACGTCTGCCGCGACCCGCGGCGGTAGGGCGTCTAGGTCCTCTGGGAGGGACGATGATCCGGGATGGGATGGCGAGGAGCCTCATTGCTGGAAGCACGTTGATGAAGACGAGCTTGCTAGAAGAGTACGTGAAATGCGGGAGACAAGAACAGCACCTGCTCCTCAGAAGTTCGACCGAAAGGTTTCTGCAATCGGTAGACCAGGACTCAACCATTTGCAGTCCTTTCCTCGTGGCATGGAATGTATAGATCCACTTGGGTTGGGACAAGGTTTGAATGCCATCAACAATGAAGTCATTCCTGGGAGACATCCCTTGGGAGGAAGTCTTTCCTTGCAAGCTCGAGAATCAAGTTGGAGTCATTGTTACTCTACTGCTCTGCTTATCGTTCCTGGTGTATGGAGATGCATACTTGGCGGCATTCTACTCAAACATGTGAGGTGCATGGATCTTGTGAGCGACGTAGTAGTAATAGACAATAGATCATTAAGATTGATCACAGAGGCATCTGAGAGCTCTCCTTCTAAATCTGATAAAGAATTCATCGATAGTACCTTACGAGAAAAGTTGCTGTATTTCTCTGAAAAATTTGATGCAAAGCTTTTTATTTCTCGGATACACCAAGACACAAGTGCAGGAGACTTGGAGAAAGGCGCTTTTGCTTTAAAAACTGACCTTAAAGGACGGACACAACAAAGAAAACAATTAGTCAAAGACAACTTTGACTGCTTTGTATCATGCAAAACAACAATTGATGGAGTAAGCAAGCAAGCCAATCGAGCTTTTCAGTCTCTGTTTGAGAGACAGGCACAAGCTGAAAAGATCAGGTCAGTCCAAGGAATGCTGCAAAGGTTCAGAACACTTTTTAACTTGCCAAGTACCATTCGCAGCAGCATTAGTAAGGGTGAATATGACCTGGCAGTTCGTGAATACAAAAAAGCAAAGTCAATTGCTTTGCCATCTCATGTGGGAATTTTGAAAAAAGTTCTTGAAGAGGTTGAAAAAGTGATGCATGAGTTCAAAGGCACACTTTACAAGTCAATGGAAGACCCACAAATAGATTTGACAAACCTTGAAAACACTGTGAGACTACTATTGGAGCTGGAGCCTGAATCAGATCCTGTTTGGCATTATTTAAACATACAGGGACTATCTAGGGAGCTTCCTTTGAATTTGGGAGGGTATTCAAACTTCTATGGGCCAGAGGCCAAAGAAACAAATCACAAGATACGAGGTTTGCTTGAGAAGTGCACCTTAGATCACGAGTCAAGAATGGAAGCATTGAATAATAAAATGCATGAAAGAGCTCTTGCTGATGCAAGATGGCGGCAGATTCAACATGATCTTGATCAATCTGTAGGGGAACTCTGTAAAGATGATTCTTATGATGATTTGAGCAAATTTATTAAATTGACCATGTCCTTAATTTTTATTCTTTTGTTCTTTTATTTTTATTGTTGTCAGTCAGATGTTCATCATTCTTCTGCTGTTAATAGCCATCTCCCAGTGGGTGTGGAACCTGTGGAAGTAAATAGTGAAGAAGTTGATGCTCTTAGAGCTAGATATATTCAGAGATTGACTGCTGTACTTATCCATCACATACCAGTGTTTTGGAAAACTGCTCTTTCTGTTTTCAGCGGGAAATTTGCCAAGTCTTCTCAAGTTTCTGCTGAATCAAATGCTAACACCTTGGCTAGCAAAAATGAGGACAAGATTGGTGAGGGGAAGTACTCAAATCATTCTCTTGAGGAAGTTACTGGGATGATACGCAATACACTAGCTGTATATGAAGTAAAGAGATATGAACTTAATCAGTCAGTGTTGCATAATTCAACCTACATTCATTACAATTGGTTCCTTCATGGTGTACATGCCCTTGGTATTTATGCAAAATACTTAACTTGTCAGGTTCACAGCACCTTTCGTGAGCTTGAAGAATCAAATATCCTTCAACCGTATATGAGTGATGCCATAAATGAAATATCTAATGCATGTCAAGCTTTTGAAGTGAAGGAATCAGCTCCTTCAAGCGCTGTAATTGCACTGCGAACACTTCAATCAGAGGTGACAAAGATTTATATTTTAAGGCTTTGTGCCTGGATGCGAGCCTCCATTGTAAAAATTTCAAAAGATGAAACATGGGTCCCTGTGTCAATTATTGAGAGGAATAAATCTCCATACACAATCTCTTTCTTGCCTCTAGCATTTCAATCTATCATGTCTTCAGCAATGGATCAAATAAATTTTATGGTTCAGTCTTTAACAAGCGAGGCTTCAAAGTCGGAGGATATATTTTTGCTACTTCAAGAAATCGAGGAGTCTGTTAGACTTGCATTTTTGAACTGTTTCCTTGATTTTGCAGGTCATCTGGAGAATATTGGAAGTGGGCTTACCCAAAACAAACAAAACAAAGACAGTCCACACGTGCAGAATGGATTTTCTCATGAATTGCAAGAAAAACTACTTTTAGATGTGCCTGGGAGTCTCGTGAATCCACATCAACAATTGTTAATAGTCTTGAGCAATATTGGTTTTTGCAAAGACGAGCTTTCATGTGAATTGTACAGCAAGTACAAGCATATTTGGTCGCATTCTAGGGTAAAAACTGAAGAGGATACCAGTGACCTCCAAGATCTTGTTATGTCCTTTTCTGCACTTGAAGAAAAGGTCCTTGAACAGTACACATATGCAAAGGCAAACTTGATGAGAACTGCTGCAACTAACTATTTATTGGATTCCGGAGTCCACTGGGGAGCTGCTCCTGCAGTTAAAGGTGTGCGTGATGCAGCTGTAGAGCTACTCCATACTCTTGTGTCTGTCCATGCTGAGGTTTTTGCTGGTTGTAAGCCCCTTTTGGACAAGACACTAGGAATTCTTGTTGAAGGTTTAATTGATACTTTTCTCAGCATTTTTGATGAAAATGGAACAAACGAGCTTCGGTCCCTTGATACCAATGGTTTCTGCCAACTCATGCTTGAGCTCGAGTACTTTGAGACCATATTAAATCCTTATTTCACATCCGACGCTAGAGAGTCTTTGAAGTCTTTGCAAGGAGTGCTTTTGGAGAAAGCTACTGAAAGTGTGACAGAGGCAGCTGATAATCCAGGCCATAATCGTCGGCCAACTCGTGGGAGCGAGGAAGCTCTAGATGAACGACAACAGGGAGCAACTGCCCCAGATGAACTCATTGCACTGGCACAGCAGTACAGCACAGAATTGCTTCAACAAGAGCTTGAGAGAACACGAATAAACACTGCTTGCTTCGCAGAGTCGATTCCATTAGATTCGGTTCCCGAACCAGCCAAGGCAGCATACACTTCATTTAATGCCACTTATAGAGGAGGCACAACTCCAACCGGTTCTCCGAGTTTCTCATCCCGGAGCAGGCGTCGCTCGTAG 3687 42.88 MSSDSDDLDEDELLQMALKEQQQRDVNYLTNSRKPVANYVQPPSQSRKSASAAAVSKASGSNAQPKGGRRVVDDDDDSEVEMLSISSGDEDSTKDHRTSAATRGGRASRSSGRDDDPGWDGEEPHCWKHVDEDELARRVREMRETRTAPAPQKFDRKVSAIGRPGLNHLQSFPRGMECIDPLGLGQGLNAINNEVIPGRHPLGGSLSLQARESSWSHCYSTALLIVPGVWRCILGGILLKHVRCMDLVSDVVVIDNRSLRLITEASESSPSKSDKEFIDSTLREKLLYFSEKFDAKLFISRIHQDTSAGDLEKGAFALKTDLKGRTQQRKQLVKDNFDCFVSCKTTIDGVSKQANRAFQSLFERQAQAEKIRSVQGMLQRFRTLFNLPSTIRSSISKGEYDLAVREYKKAKSIALPSHVGILKKVLEEVEKVMHEFKGTLYKSMEDPQIDLTNLENTVRLLLELEPESDPVWHYLNIQGLSRELPLNLGGYSNFYGPEAKETNHKIRGLLEKCTLDHESRMEALNNKMHERALADARWRQIQHDLDQSVGELCKDDSYDDLSKFIKLTMSLIFILLFFYFYCCQSDVHHSSAVNSHLPVGVEPVEVNSEEVDALRARYIQRLTAVLIHHIPVFWKTALSVFSGKFAKSSQVSAESNANTLASKNEDKIGEGKYSNHSLEEVTGMIRNTLAVYEVKRYELNQSVLHNSTYIHYNWFLHGVHALGIYAKYLTCQVHSTFRELEESNILQPYMSDAINEISNACQAFEVKESAPSSAVIALRTLQSEVTKIYILRLCAWMRASIVKISKDETWVPVSIIERNKSPYTISFLPLAFQSIMSSAMDQINFMVQSLTSEASKSEDIFLLLQEIEESVRLAFLNCFLDFAGHLENIGSGLTQNKQNKDSPHVQNGFSHELQEKLLLDVPGSLVNPHQQLLIVLSNIGFCKDELSCELYSKYKHIWSHSRVKTEEDTSDLQDLVMSFSALEEKVLEQYTYAKANLMRTAATNYLLDSGVHWGAAPAVKGVRDAAVELLHTLVSVHAEVFAGCKPLLDKTLGILVEGLIDTFLSIFDENGTNELRSLDTNGFCQLMLELEYFETILNPYFTSDARESLKSLQGVLLEKATESVTEAADNPGHNRRPTRGSEEALDERQQGATAPDELIALAQQYSTELLQQELERTRINTACFAESIPLDSVPEPAKAAYTSFNATYRGGTTPTGSPSFSSRSRRRS 1228
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 9758609 9784441 - ClCG09G010020.1 Cla09g00935 280355

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g00935 1228 PANTHER EXOCYST COMPLEX COMPONENT SEC5 583 694 IPR029175 GO:0000145|GO:0006893
Cla09g00935 1228 PANTHER EXOCYST COMPLEX COMPONENT SEC5 1 186 IPR029175 GO:0000145|GO:0006893
Cla09g00935 1228 MobiDBLite consensus disorder prediction 23 63 - -
Cla09g00935 1228 MobiDBLite consensus disorder prediction 1132 1150 - -
Cla09g00935 1228 MobiDBLite consensus disorder prediction 1122 1151 - -
Cla09g00935 1228 MobiDBLite consensus disorder prediction 23 125 - -
Cla09g00935 1228 MobiDBLite consensus disorder prediction 88 125 - -
Cla09g00935 1228 Pfam Exocyst complex component Sec5 279 1184 IPR039481 -
Cla09g00935 1228 PANTHER EXOCYST COMPLEX COMPONENT SEC5 731 1223 IPR029175 GO:0000145|GO:0006893
Cla09g00935 1228 PANTHER EXOCYST COMPLEX COMPONENT SEC5 502 549 IPR029175 GO:0000145|GO:0006893
Cla09g00935 1228 PANTHER EXOCYST COMPLEX COMPONENT SEC5 243 350 IPR029175 GO:0000145|GO:0006893
Cla09g00935 1228 MobiDBLite consensus disorder prediction 1205 1222 - -
Cla09g00935 1228 PANTHER EXOCYST COMPLEX COMPONENT SEC5 349 479 - -
Cla09g00935 1228 PANTHER EXOCYST COMPLEX COMPONENT SEC5 502 549 - -
Cla09g00935 1228 PANTHER EXOCYST COMPLEX COMPONENT SEC5 243 350 - -
Cla09g00935 1228 PANTHER EXOCYST COMPLEX COMPONENT SEC5 349 479 IPR029175 GO:0000145|GO:0006893
Cla09g00935 1228 PANTHER EXOCYST COMPLEX COMPONENT SEC5 731 1223 - -
Cla09g00935 1228 PANTHER EXOCYST COMPLEX COMPONENT SEC5 583 694 - -
Cla09g00935 1228 PANTHER EXOCYST COMPLEX COMPONENT SEC5 1 186 - -
Cla09g00935 1228 MobiDBLite consensus disorder prediction 1204 1228 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g00935 K17637 EXOC2, SEC5; exocyst complex component 2 - csv:101215110 1556.96
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1384 . . . . Bpe02g00238 . . . . . . . Car01g00873 . . Cpe06g00902 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bhi09g01519 . . . . . . Cla09g00935 Cam09g0987 Cec09g0992 Cco09g0997 . . Cre09g0953 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006308 1 4 1 1 1 1 2 1 1 1 1 1 2 0 1 2 1 1 2 1 1 1 2 1 2 1 1 1 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla09g00935 Cla_Chr09 FPKM 44.362297 47.890251 43.571671 41.807743 6.789247 6.135647 7.841313 55.738209 54.435333 56.837334