Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g00948 ATGGGATCAGATTTTGAACTAAAGATCAACCCAACAAGAGATGATGATCCTTCCTCGACCTTTGAACTTCAGTTGGCCAAAGGCACTGCCACTCCTTTTTTCTGTTCTAATGAAACCAATTCCATGTTCATTCTCACTGCCAAACTCACAGGCTTTGCAGCAGATGACATTGTGATAACTATTAATGGAAGCGGTACTCGTATTGAGATTGGCTGGGGAAAACTTGTTCGGAAAGTGGAGATTACGGGAAGGATGTACAAGAAAGAAACAGAGACAAGGAGGTTCAAGAAGATTTTTCGAATTCCGGATGGTGTGGTTTTGGACGAAATCAAGGCGACGTATAATGACAAAGAATCAGTTTTGAAGATTTCGATGCCGAAATTGGTGGACGGAATGCTTGGGGTACGAATTGAAGAAGTGAAGGAACAGGAAGCTGGTGAAGCCACATTCGGATCTCAGGATTATCAAGAGGAGCTGCTTGAGACTCTGGAAACTGGCAGAAAGACCAATTTGGTTGATGATAATCATGAAAAGGAGGATGACGATGCTGCTAATGGAGAAGTTGAAGAAAAAAATGTCGGGCCCGAAGCATTTCATGAGAGAGAATATGTAGCAGAAATGCCGCCAGAAGAGATCAAGAAGTTGAAGGGCAATGAGATGGATCAAGATATTGATGGAGAATCCAATGACGACTACTCTGAAAGGAAACAGACAGTAAAAGTAGCAACAAAAACTACGGAGTATGAAGCCACAAGAGAAAATGTTAATGGAGAAATCAAGGTTCCCAGGGTTAGGAGTAAGGAAGGGATAGATGTGGCTGAAGGAACAGCCAACCATCAAAAAGAAAAACGACTCGATGCTGGAGCATGTGATGGTGATAAAGCAACCCTGATAAATAAGACACCATATGTCAAGACACGATCAAAAGCTTCTATGGATCGAGAGGCACAAGTATTAGACCATGAACTTTCGCAGCCAAATCGACTGACTCAAGCAGAACCAGGGACGCAGGAAACATACAAAAACATTTGGGAATTGAAAGAGCTTGAAACAGATAAAGGAAGTCCATATTTGCAAAGCCCTGCACATCAGCACGAAGGAAAAGGAGTTGATCAAAAAGGAAGTTCCCAAACAAAAGATGAAATTAAGGACGCAAGAGAAGAATGCAAGTCAACACATGAAGATTCCAGCAAGGAAGCAAAACAAGAGAAGAAACAAGATTCAAAACAGTTTAAAGTGCGTACTCCAATCATCATTGCAGGGTCAGCGCTTCTCGCATCCCTTGCAATTGTTGTGTTTAACTTAATGAAAAGTAAAAGACGAGAGAAAAATATGAGAGGGTAA 1344 41.59 MGSDFELKINPTRDDDPSSTFELQLAKGTATPFFCSNETNSMFILTAKLTGFAADDIVITINGSGTRIEIGWGKLVRKVEITGRMYKKETETRRFKKIFRIPDGVVLDEIKATYNDKESVLKISMPKLVDGMLGVRIEEVKEQEAGEATFGSQDYQEELLETLETGRKTNLVDDNHEKEDDDAANGEVEEKNVGPEAFHEREYVAEMPPEEIKKLKGNEMDQDIDGESNDDYSERKQTVKVATKTTEYEATRENVNGEIKVPRVRSKEGIDVAEGTANHQKEKRLDAGACDGDKATLINKTPYVKTRSKASMDREAQVLDHELSQPNRLTQAEPGTQETYKNIWELKELETDKGSPYLQSPAHQHEGKGVDQKGSSQTKDEIKDAREECKSTHEDSSKEAKQEKKQDSKQFKVRTPIIIAGSALLASLAIVVFNLMKSKRREKNMRG 447
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 9934546 9936842 + ClCG09G010170.1 Cla09g00948 280368

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g00948 447 SUPERFAMILY HSP20-like chaperones 22 129 IPR008978 -
Cla09g00948 447 Pfam Hsp20/alpha crystallin family 38 129 IPR002068 -
Cla09g00948 447 PANTHER HEAT SHOCK PROTEIN 26 5 440 IPR045045 -
Cla09g00948 447 MobiDBLite consensus disorder prediction 323 338 - -
Cla09g00948 447 MobiDBLite consensus disorder prediction 307 321 - -
Cla09g00948 447 CDD ACD_sHsps-like 37 127 - -
Cla09g00948 447 Gene3D - 8 144 IPR008978 -
Cla09g00948 447 MobiDBLite consensus disorder prediction 167 191 - -
Cla09g00948 447 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 24 143 IPR002068 -
Cla09g00948 447 MobiDBLite consensus disorder prediction 366 411 - -
Cla09g00948 447 MobiDBLite consensus disorder prediction 351 413 - -
Cla09g00948 447 PANTHER HSP20-LIKE CHAPERONES SUPERFAMILY PROTEIN 5 440 - -
Cla09g00948 447 MobiDBLite consensus disorder prediction 306 338 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g00948 - - - mcha:111013495 471.855
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1372 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1500 Cone7ag1449 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla09g00948 Cam09g0999 Cec09g1000 Cco09g1012 . . Cre09g0962 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008746 0 0 0 0 0 1 2 1 1 2 2 1 2 1 0 2 1 2 0 1 2 0 2 1 1 2 1 2 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla09g00948 Cla_Chr09 FPKM 19.018518 19.957836 30.903234 32.275021 23.781471 27.098227 23.872885 41.858883 38.431801 40.224159