Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g00969 ATGATAAAGCAAGCGCACTCATTGATTCAAATTCCCAACGAAACCCAATTCATCGGATTCAAAAGCATTGGCAGAGTCAGATTCTGTTTGTCGATCCTTCAATCCTCCGCCTTCCAAATCAGACCGCTGGGGAATCTCACTTCCACACGTTCCCGCAACCACCATCGCCGGCCTCCCATGGCCGCCTCCGCCGCCGCGGATAACCCATCATCCACCTCTTCATCCTCCTCCAACCCTTTCATTTTCTCCCCCGATCCTCCCCCTAGACTTCCTCTCACACCCCATCAGATTAAGCTTTGTTCCGAAGCTCTTGAGGCCTTCAGGGAGAAGCTTCAGATGCCTGATGTCATCAACCAGGAGTTCGCCCGATTGCAGGCCAAGAGAATAACTGTATCTGATATGAAGAGAAGTTGCTCTGTGGCACTTGACAATGTCAACATAAATAAAAATCGTTACACGGATGTATTACCCTTTGATGAGACTAGAGTTGTACTTGACTCATGCAAGGATTACAGACCTTCCGCAAGGGGTTATATCAATGCAAGCTTTATTTCGACTTCCTCCTCAAAAAGCCTTTCTAAATTTATTGCTACACAAGGTCCATTACCACACACTTATGAGGATTTCTGGGAGATGGTATTTCAGTATAAATGCCCTGCAATCTTGATGCTTACTCGTCTTGTTGATAATTACAAGATGGTAAAGTGTGGAGATTATTTTCAGGCTGAAGATGGTCCTAGAGATTTTGGTAATCTAATTGTTATCTCTAAATGGATAAAATCTTCCAACTCCTCTCTTATACTGCGCCATTTGGAGTTGAACCATAAAGAGTCGGAAGAATCTGTGGCTGTTCTACATATTCAGTACCCAGAATGGCCTGACCATGGAGTTCCTAATGACACACTTGCTGTTCGTGAAATGCTGAAGAGGCTGTATCATTTACCTCCCGATCTTGGCCCAATAGTGGTGCACTGCAGTGCAGGTATTGGAAGAACCGGAACATATTGTGCAATTCATAACACAATTCAGAGAATCCTTGCTGGAGACATGTCTGCTTTAGATCTTGTCAATACCATTGCGACATTTAGGTCCCAGCGAATTGGAATGGTTCAAACACTGGATCAATACTTTTTCTGCTATAGAACTATTGTTGATGAACTAGAAGACCTTCTATCTGTTCCACAGTAG 1188 44.02 MIKQAHSLIQIPNETQFIGFKSIGRVRFCLSILQSSAFQIRPLGNLTSTRSRNHHRRPPMAASAAADNPSSTSSSSSNPFIFSPDPPPRLPLTPHQIKLCSEALEAFREKLQMPDVINQEFARLQAKRITVSDMKRSCSVALDNVNINKNRYTDVLPFDETRVVLDSCKDYRPSARGYINASFISTSSSKSLSKFIATQGPLPHTYEDFWEMVFQYKCPAILMLTRLVDNYKMVKCGDYFQAEDGPRDFGNLIVISKWIKSSNSSLILRHLELNHKESEESVAVLHIQYPEWPDHGVPNDTLAVREMLKRLYHLPPDLGPIVVHCSAGIGRTGTYCAIHNTIQRILAGDMSALDLVNTIATFRSQRIGMVQTLDQYFFCYRTIVDELEDLLSVPQ 395
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 10183010 10189615 + ClCG09G010370.2 Cla09g00969 280389

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g00969 395 MobiDBLite consensus disorder prediction 47 87 - -
Cla09g00969 395 ProSitePatterns Tyrosine specific protein phosphatases active site. 323 333 IPR016130 GO:0016311|GO:0016791
Cla09g00969 395 ProSiteProfiles PTP type protein phosphatase domain profile. 117 386 IPR000242 GO:0004725|GO:0006470
Cla09g00969 395 PANTHER PROTEIN-TYROSINE-PHOSPHATASE PTP1 60 392 - -
Cla09g00969 395 SMART PTPc_3 116 388 IPR000242 GO:0004725|GO:0006470
Cla09g00969 395 Gene3D Protein tyrosine phosphatase superfamily 93 392 IPR029021 -
Cla09g00969 395 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 302 377 IPR000387 GO:0016311|GO:0016791
Cla09g00969 395 SMART ptp_7 283 385 IPR003595 -
Cla09g00969 395 MobiDBLite consensus disorder prediction 65 80 - -
Cla09g00969 395 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 93 389 IPR029021 -
Cla09g00969 395 PRINTS Protein tyrosine phosphatase signature 320 338 IPR000242 GO:0004725|GO:0006470
Cla09g00969 395 PRINTS Protein tyrosine phosphatase signature 282 299 IPR000242 GO:0004725|GO:0006470
Cla09g00969 395 PRINTS Protein tyrosine phosphatase signature 177 184 IPR000242 GO:0004725|GO:0006470
Cla09g00969 395 PRINTS Protein tyrosine phosphatase signature 353 368 IPR000242 GO:0004725|GO:0006470
Cla09g00969 395 PRINTS Protein tyrosine phosphatase signature 369 379 IPR000242 GO:0004725|GO:0006470
Cla09g00969 395 PRINTS Protein tyrosine phosphatase signature 195 215 IPR000242 GO:0004725|GO:0006470
Cla09g00969 395 CDD PTPc_plant_PTP1 178 380 - -
Cla09g00969 395 PANTHER RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE 60 392 - -
Cla09g00969 395 Pfam Protein-tyrosine phosphatase 146 384 IPR000242 GO:0004725|GO:0006470
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g00969 - - - bhj:120086129 678.322
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1273 Blo01g01756 . . . . . . Bma01g02539 . . . Cma09g01150 . . . Cpe06g00927 . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g00846 . . . . . . . Cmo09g01160 . . . . . . Bhi09g01578 Tan01g3003 . . . . . Cla09g00969 Cam09g1020 Cec09g1024 Cco09g1035 . . Cre09g0986 . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla01g01668 . 76 649 Protein tyrosine phosphatase (PTP) family AT3G50110 62.2 3.5e-191 665.2
Cla02g00625 . 42 647 Protein tyrosine phosphatase (PTP) family AT3G50110 54.8 1.8e-174 609.8
Cla10g01471 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 65.9 1.7e-157 552.7
Cla08g00816 . 628 1416 Protein tyrosine phosphatase (PTP) family AT3G10550 63.6 8.0e-308 1053.1
Cla08g00816 . 628 1416 Protein tyrosine phosphatase (PTP) family AT5G04540 59.4 3.8e-286 981.1
Cla06g01227 . 1 1257 Protein tyrosine phosphatase (PTP) family AT5G58160 55.4 0.0e+00 1088.6
Cla09g00969 . 86 390 Protein tyrosine phosphatase (PTP) family AT1G71860 67.3 3.2e-122 435.3
Cla06g01782 . 188 1083 Protein tyrosine phosphatase (PTP) family AT5G23720 65.1 0.0e+00 1087.8
Cla09g02029 . 69 234 Protein tyrosine phosphatase (PTP) family AT2G04550 76.9 8.7e-71 263.5
Cla05g02189 . 107 419 Protein tyrosine phosphatase (PTP) family AT3G52180 53.7 2.1e-90 329.3
Cla07g00459 . 10 274 Protein tyrosine phosphatase (PTP) family AT3G10940 67.7 2.5e-104 375.6
Cla10g01351 . 143 558 Protein tyrosine phosphatase (PTP) family AT3G01510 68.6 5.8e-180 627.5
Cla02g01771 . 93 296 Protein tyrosine phosphatase (PTP) family AT2G32960 59.4 3.8e-75 278.5
Cla09g01043 . 25 233 Protein tyrosine phosphatase (PTP) family AT2G32960 63.9 2.1e-73 272.7
Cla10g00234 . 87 419 Protein tyrosine phosphatase (PTP) family AT2G35680 55.8 3.1e-101 365.5
Cla11g00178 . 17 266 Protein tyrosine phosphatase (PTP) family AT2G35680 54.7 4.3e-79 292.0
Cla10g00234 . 123 298 Protein tyrosine phosphatase (PTP) family AT5G56610 50.6 6.2e-43 171.0
Cla02g01771 . 127 296 Protein tyrosine phosphatase (PTP) family AT4G03960 78.2 6.3e-78 287.3
Cla09g01043 . 34 233 Protein tyrosine phosphatase (PTP) family AT4G03960 64.0 6.3e-70 260.8
Cla03g01026 . 13 186 Protein tyrosine phosphatase (PTP) family AT4G03960 56.9 2.0e-55 212.6
Cla03g01026 . 7 212 Protein tyrosine phosphatase (PTP) family AT3G02800 65.5 6.0e-76 280.8
Cla02g01771 . 118 290 Protein tyrosine phosphatase (PTP) family AT3G02800 60.7 4.8e-57 218.0
Cla07g00286 . 1 188 Protein tyrosine phosphatase (PTP) family AT3G55270 65.6 7.7e-63 239.2
Cla10g01471 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 65.9 1.7e-157 552.7
Cla02g00625 . 8 647 Protein tyrosine phosphatase (PTP) family AT3G19420 61.1 1.5e-215 746.1
Cla01g01668 . 74 649 Protein tyrosine phosphatase (PTP) family AT3G19420 60.8 6.9e-200 694.1
Cla01g01668 . 76 649 Protein tyrosine phosphatase (PTP) family AT3G50110 62.2 3.5e-191 665.2
Cla02g00625 . 42 647 Protein tyrosine phosphatase (PTP) family AT3G50110 54.8 1.8e-174 609.8
Cla06g01227 . 1 1257 Protein tyrosine phosphatase (PTP) family AT5G58160 55.4 0.0e+00 1088.6
Cla08g00816 . 628 1416 Protein tyrosine phosphatase (PTP) family AT3G10550 63.6 8.0e-308 1053.1
Cla08g00816 . 628 1416 Protein tyrosine phosphatase (PTP) family AT5G04540 59.4 3.8e-286 981.1
Cla02g02139 . 67 249 Protein tyrosine phosphatase (PTP) family AT3G44620 64.6 3.2e-69 258.8
Cla10g00175 . 50 300 Protein tyrosine phosphatase (PTP) family AT2G35320 62.9 2.9e-90 328.9
Cla04g00726 . 1 672 Protein tyrosine phosphatase (PTP) family AT3G09100 70.4 1.4e-286 982.2
Cla04g00726 . 5 672 Protein tyrosine phosphatase (PTP) family AT5G01290 65.6 2.0e-258 888.6
Cla04g00726 . 86 682 Protein tyrosine phosphatase (PTP) family AT5G28210 55.6 4.1e-184 641.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008867 1 2 1 1 0 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 1 1 2 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla09g00969 Cla_Chr09 FPKM 0.214462 0.0 0.465087 0.0 0.0 0.0 0.0 0.442237 0.59775 0.179956