Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g00972 ATGGCGGACAGGGAAGAAGAAACCCCAGATCAAAACGAGTTGAAAATCCCCGTCTTCACCGTTCTCAAGAACGGCGCAATTCTCAAGAACATCTTCATCGTCAACAATGTTGCAGATCGAGAGAACGAGGAGGTAATAATCCTTGGACGACACCCAGATTGCAACATAATGCTCACACATCCAAGCATTAGCAGATTCCATCTCCAAATCCATTCAAACCCCTCTTCGCAGAAGCTTTGTGTTGTGGATTTATCATCAGTGCACGGAACATGGGTTTCAGGGAAGAGGATTGAAACAGGGGATAGAGTGGAGATGATGGAAGGAGATACTCTGAGGGTTGGTGGTTCGAGCAGAGTTTATAGGCTTCATTGGGTTCCTTTGAGCTGCGCTTATGATTTTGAAGGTCCTAAAGAAAAGAAGAAACATGAAGTAGGAATTGTAGAAGAGAAGGCTGTGCAGGATTGCGAGAAGGAGATTTCATTGTTGGATGAAACTAAAGAAACTGTGGTGGATTCAGTTTTTGGTAGTATTGAGCCACTATATTCTGATGAGAATTGGAACATAGAGATGATGAAAGAGATTCCTTTAGCACCTCCATTAAGTGACGTTGAAGAAATGGCTGTGTCTTCTGTTGACCGTGTCAAATTTTTGAGTGACTTGAGAAATGAATCCGAACAAGTGGAAACTAGTTTGATAAGCATACCTTTTGGAAATGAAATGAAAGGTTTGGAAATGAATTTTCAACCCCCTTCTCTGCCTCTTTCAGCAGATAATCTGTCTTTCAATGTTGAAAACATTATCATGTCTTCATTCTTTGGGAGTGACAGCAAAAGTTCCTCGAGTAGTACGAATGATACTAGTAGTATCTGGAACATAACGTTGGAAGATATATCAAGTTCCCTGAATGAAAAGCAACAGTGTCACAGTAAAATTGACCCTTCTCTGCCTCTTTCAGCTGAGAATCTGTCTTTCAATGTTGAAAACATCATCATGTCTTCATTTTTTGACGGTGAAAGCAAGAGTTCATCTTGTAATATGTTTGAATGGAAGGAAACTGGTAGTATCTTGACCATACCATTGGAAAATAACTCAAATAATTTATCTGAGGTTGATGATATAGAAGCTACTCCAGAGTATGAATATCAACAATCAACTGATGAAAACGAGGGTCAGCGACTGCGGTCCATGTCTCTTTACAGAGAGAATTCTTCTGATGTTCAAGACACTGCCTTGACTGCATTCATTGATGGTGAATGGGAGAGTCCGTCTAGAAATAAATGTGAACAGAAGGAAATTAGCGACATCATGACCATGCCATTTGGACATGAATTAGGCCATGTGGCTGTGGTTGATAATGAGAAGCCCATTTCTGATAATGAAAGTCAACGATTTGTTGCAGAGAGGAATTTGTGTTCGAATTTCTCAGATGATGAAACCCAAGATCTACCAGTCCATGAAGTAAAATCATCAAGCAAACAACCTCTGCTTGCTTTGCAATCAGAAACAGTAACAGAAAAGAATGAGTGCATGCTGGAACTGGAGTTGCATCCTCTAGAGGACAGTCATTCTTCAATTAGCACAGAAAAAGGGATTCAGGAAATTGAACTTCTTACCAAAATTCAAGCAGAAGGTGGGGAAGTTTATGTCGATAAAGGTAATGGAGAGTTATATCATCATGTAACAGAGTATTTTCTGGATTGCCTATCAGAATCCAAAAATGACAGTGCTGTGAAGGCCACATCTGAGGTAACACCAAACTCATTAATGAAACAGGATGTTGAATGTTGCGTCGAAGAAAACTATAATGCAAGACTCGAAACGCTCGAACCGAGAAAAAGCAGTGTACCACGGGAAGATTATGAACATAAGGAACTCTCAGAGCCCAGTTTTATATCTTGTGCATCGGAATATGTTTACTCATCTCTTCTAGATGAGGAAGTCCCCCCAGAGATTTCATTTGAGAAAGAATGCCAGACACCACATGAGAACTTAGATGTGTCCTTGCCCATAAGATCGGAGAGTGCATTAGCCATGGGGGGAAACATTTGGTTAAGAAGGGGTAAACCAACTAGTTTTCCTCGAATTGAGACAGGTGTGAGTCGAAAAAATCGAGCAGGGACATTGTTAATGGATGAAATTAACCATGAGATGGCAGGAGATAAATCAGTAATAAACACTCTCTCTCATTTGGATGAGGAGGAGGAAGAAGAAATCTTTACTCCAGACAAGGAGAATTTCACACCAAACACACTTTTGATGAAATCGTTGAAAAAAAAGAATAGCATAGAAGACAGTGGGAATTGCTTCAGGTCATCCAAGTCCCAAACATCAATTTTCAAGTCTAGACATAAAGTCAAACTAGAAGAAGAGCTAAGTGAAGATTCAGACAAGGAGAACCAAACTCCTAGACTTCTCCAAGAACAAAAACTGTCAAAACAAATCTCTAAGAATAGGAGGTTTGAACAGGAAAAAACAATGACAAAGAAAGCAGGAGTGGAACGGGCTCCCTTTCAATCTTTGCAGTCAAACATTGCCGGAAAGAAGAGACCGGAGGCTACTGTAGTTAAGAAGTCTGCGAGAAAGAGTAATATATCTGTTTGCATAGGGGCCATGAAGAATAAATTCACTGTGGAAGGAAAGAAGCGTTGGACCATGGTTGTGGACACCAATTCTCTTCTGAACAAGGAATCGATGAAGTCACTACAGCTTTTAGAAGGTCTCCAAGGGACACATCTGATCGTTCCACGAATCGTCATAAGGGAGCTAGACTGCTTGAGGAGACACGGCAGCCTCTTTCGAAAAACAACAGAGGCAGCTTCAGTTCTTCAATGGATCAAAGATTGTATGGTGCAAGCAAGGTGGTGGATCCATGTTCAAAGTTCGGAAGAAGGTGTGCCTCCTGTGACGCCTCCCGCTACTCCTCAATCTACATATACTGAGGGGAGCAGTCAAAGTTTGTTCTGGAGAACAACGAGCTCAATCCAATCCATAACGCAGAGAAGTTTCATGGAAGCTCTTTCACCAACTCCAGAAGATCATATCCTTGACTGTGCACTTCACTTTAGGAGGGGAGTGAACCATGGACAACTCGTTCTTATAAGCGACGACGTGAGCCTGAAAATTAAAGCAATGGCTGAGGGACTAATTTGTGAAACAGCCAAAGAGTTCAGGGAGAGTCTAGTGAATCCATTTTCAGAGAGGTTCTTGTGGGCTGACAGCTCTCCAAGGGGCCTGACATGGTCTTGCCCTGATGATATGGTGTTGAGGGAACGGTACGATCGATGCTCGTCGAGGTCGTCGAAAGGAGCAGAGGGAGCTAAGGGGCTGAAGCTCATTTTGCTTCACAACTCCCAGTATGGAATGTTCAGATAA 3372 41.81 MADREEETPDQNELKIPVFTVLKNGAILKNIFIVNNVADRENEEVIILGRHPDCNIMLTHPSISRFHLQIHSNPSSQKLCVVDLSSVHGTWVSGKRIETGDRVEMMEGDTLRVGGSSRVYRLHWVPLSCAYDFEGPKEKKKHEVGIVEEKAVQDCEKEISLLDETKETVVDSVFGSIEPLYSDENWNIEMMKEIPLAPPLSDVEEMAVSSVDRVKFLSDLRNESEQVETSLISIPFGNEMKGLEMNFQPPSLPLSADNLSFNVENIIMSSFFGSDSKSSSSSTNDTSSIWNITLEDISSSLNEKQQCHSKIDPSLPLSAENLSFNVENIIMSSFFDGESKSSSCNMFEWKETGSILTIPLENNSNNLSEVDDIEATPEYEYQQSTDENEGQRLRSMSLYRENSSDVQDTALTAFIDGEWESPSRNKCEQKEISDIMTMPFGHELGHVAVVDNEKPISDNESQRFVAERNLCSNFSDDETQDLPVHEVKSSSKQPLLALQSETVTEKNECMLELELHPLEDSHSSISTEKGIQEIELLTKIQAEGGEVYVDKGNGELYHHVTEYFLDCLSESKNDSAVKATSEVTPNSLMKQDVECCVEENYNARLETLEPRKSSVPREDYEHKELSEPSFISCASEYVYSSLLDEEVPPEISFEKECQTPHENLDVSLPIRSESALAMGGNIWLRRGKPTSFPRIETGVSRKNRAGTLLMDEINHEMAGDKSVINTLSHLDEEEEEEIFTPDKENFTPNTLLMKSLKKKNSIEDSGNCFRSSKSQTSIFKSRHKVKLEEELSEDSDKENQTPRLLQEQKLSKQISKNRRFEQEKTMTKKAGVERAPFQSLQSNIAGKKRPEATVVKKSARKSNISVCIGAMKNKFTVEGKKRWTMVVDTNSLLNKESMKSLQLLEGLQGTHLIVPRIVIRELDCLRRHGSLFRKTTEAASVLQWIKDCMVQARWWIHVQSSEEGVPPVTPPATPQSTYTEGSSQSLFWRTTSSIQSITQRSFMEALSPTPEDHILDCALHFRRGVNHGQLVLISDDVSLKIKAMAEGLICETAKEFRESLVNPFSERFLWADSSPRGLTWSCPDDMVLRERYDRCSSRSSKGAEGAKGLKLILLHNSQYGMFR 1123
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 10221520 10225909 + ClCG09G010400.1 Cla09g00972 280392

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g00972 1123 Gene3D - 879 1060 - -
Cla09g00972 1123 CDD FHA 17 122 IPR000253 GO:0005515
Cla09g00972 1123 PANTHER FHA DOMAIN-CONTAINING PROTEIN PS1 3 462 - -
Cla09g00972 1123 PANTHER FHA DOMAIN-CONTAINING PROTEIN PS1 462 1120 - -
Cla09g00972 1123 CDD PIN_Smg5-6-like 886 1059 - -
Cla09g00972 1123 MobiDBLite consensus disorder prediction 781 803 - -
Cla09g00972 1123 SMART FHA_2 45 97 IPR000253 GO:0005515
Cla09g00972 1123 PANTHER TRANSMEMBRANE PROTEIN 18 3 462 - -
Cla09g00972 1123 PANTHER TRANSMEMBRANE PROTEIN 18 462 1120 - -
Cla09g00972 1123 Pfam FHA domain 47 114 IPR000253 GO:0005515
Cla09g00972 1123 Gene3D - 2 127 - -
Cla09g00972 1123 MobiDBLite consensus disorder prediction 780 805 - -
Cla09g00972 1123 Pfam PIN domain 885 1053 IPR002716 -
Cla09g00972 1123 SUPERFAMILY SMAD/FHA domain 42 127 IPR008984 GO:0005515
Cla09g00972 1123 ProSiteProfiles Forkhead-associated (FHA) domain profile. 46 97 IPR000253 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g00972 - - - bhj:120085392 1882.84
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1223 . . . . . Bpe04g00386 . . . . . Cma09g01091 . . . Cpe06g00891 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo09g01100 . . . Car09g00989 . . . . . . . . . Cla09g00972 Cam09g1024 Cec09g1027 Cco09g1039 . . Cre09g0989 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012603 0 1 1 1 0 1 0 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla09g00972 Cla_Chr09 FPKM 1.949287 3.028201 1.858692 2.769965 3.245584 2.741345 3.994184 6.771582 6.039826 7.372709