Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g00973 ATGGATCCTGAAGATAGTTTGTGTAGCTCTGAAGTTTGGACAAAATCTTCTTTTCCTAATAATAATATTCAGCAACCAGCACAAAAATGGGCAGATGCTTCCATTTTAGACTATGCTATGGAACAACCTTTCCAAGAATTTGAAGAACGGACTGAATCGAAGGCCTCCCTAAGCTGTAACCCGAATCAACAAATTGAAATCCTTGATAAAGATAGTAATCAGATGAATGCAGCACTTCTAGCCAGTAAAATTCAAGATTGGGATCCGAGGGCAATGCTAAATAATCTTTCTTTTCTTGAGCAGAAGATTCATCAGCTTCAGGAACTTGTGCATTTGATCGTTGGTCGGAGGAGCCAAGTCTTCGGGAGGCCAGATGAACTTGTAGTTCAGCAACAGCAGCTGATAACTGCAGATCTAACTTCAATTATTGTTCAGTTAATCTCGACGGCTGATCCAAATCAAAAAGTACTGAATCTTTGCGGTAGAGAAAAGGTTTTAAAGATGGATCCTGAAGATAGTTTGTGTAGCTCTGAAGTTTGGACAAAATCTTCTTTTCCTAATAATAATATTCAGCAACCAGCACAAAAATGGGCAGATGCTTCCATTTTAGACTATGCTATGGAACAACCTTTCCAAGAATTTGAAGAACGGACTGAATCGAAGGCCTCCCTAAGCTGTAACCCGAATCAACAAATTGAAATCCTTGATAAAGATAGTAATCAGATGAATGCAGCACTTCTAGCCAGTAAAATTCAAGATTGGGATCCGAGGGCAATGCTAAATAATCTTTCTTTTCTTGAGCAGAAGATTCATCAGCTTCAGGAACTTGTGCATTTGATCGTTGGTCGGAGGAGCCAAGTCTTCGGGAGGCCAGATGAACTTGTAGTTCAGCAACAGCAGCTGATAACTGCAGATCTAACTTCAATTATTGTTCAGTTAATCTCGACGGCTGGTAGTCTGCTTCCATCTGTAAAGCATAACTTGTCTGCTGCTGTTCCTGCAGTCGGGCAGCTGGAGCAGCTCGACAAAGTTCTTTTCGCGTCTGGACCCGGGACTGATAATGGTGGTGTTCAGTCACAACATGGTGATGGAACCAAACTCCCCGAGCTTCCAACCCAAGTGGACGGAAGTAGCAAGTGTGGGAAAGAACAGAACATGACTGTTGAAGAACACGAATCAAAGGATGAAGAAGACGCAGATGATAATGAGAACCTTCCACCCGGTTCGTATGAAATATTGCAGCTAGAAAAAGAAGAGATCCTAGCACCTCACACCCACTTCTGTGCAATATGTGGAAAAGGGTTCAAGAGAGATGCAAATCTACGAATGCACATGAGGGGTCATGGTGACGAGTATAAAACTGCAGCTGCCCTTGCAAAGCCGAACAAAGAAATGGGTTCCGAGACCATGCTAATTAAGAGGTATTCCTGCCCCTTCACCGGCTGCAAGCGTAACAAGGATCATAAGAAGTTTCAGCCTTTGAAAACTATTCTGTGTGTTAAAAACCATTACAAGAGAACTCACTGTGACAAAAGCTTCACTTGCAGCAAATGCAACTCTAAGAAATTCTCAGTAATTGCTGATCTCAAAACACATGAGAAGCATTGTGGGAAAGATAAATGGCTTTGTTCTTGTGGGACTACTTTCTCTAGGAAAGACAAGCTCTTTGGACACATTGCTCTCTTCCAAGGCCACACTCCTGCAATTCCTCTCGATGAGTCAAAGGGAGCAGTCATGTCCTGTGATCGAGGAGAACGCTATGAAACAATGAATAAGCTTGGGAGCATAAATTTCAGTTTCGGGTCGGTTGCTTCAGGAGGAAGCTCAGTTGAAACCATAGGAGATGCAAAAGGTGGTGTTGATGATCCTCTTAGTTATTTCTCACCTCTGAACTTCGATTCATGTAATTTTGGTGGCTTTCATGAGTTTCCTCGACCGCCATTCGAAAACACAGACAATGCATTTTCGTTCCTTATCCCGGCATCTAGCAATTACACCCAAAAATCTGGTGCAGAATCAAGCTCTTGA 2028 42.46 MDPEDSLCSSEVWTKSSFPNNNIQQPAQKWADASILDYAMEQPFQEFEERTESKASLSCNPNQQIEILDKDSNQMNAALLASKIQDWDPRAMLNNLSFLEQKIHQLQELVHLIVGRRSQVFGRPDELVVQQQQLITADLTSIIVQLISTADPNQKVLNLCGREKVLKMDPEDSLCSSEVWTKSSFPNNNIQQPAQKWADASILDYAMEQPFQEFEERTESKASLSCNPNQQIEILDKDSNQMNAALLASKIQDWDPRAMLNNLSFLEQKIHQLQELVHLIVGRRSQVFGRPDELVVQQQQLITADLTSIIVQLISTAGSLLPSVKHNLSAAVPAVGQLEQLDKVLFASGPGTDNGGVQSQHGDGTKLPELPTQVDGSSKCGKEQNMTVEEHESKDEEDADDNENLPPGSYEILQLEKEEILAPHTHFCAICGKGFKRDANLRMHMRGHGDEYKTAAALAKPNKEMGSETMLIKRYSCPFTGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSFTCSKCNSKKFSVIADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPLDESKGAVMSCDRGERYETMNKLGSINFSFGSVASGGSSVETIGDAKGGVDDPLSYFSPLNFDSCNFGGFHEFPRPPFENTDNAFSFLIPASSNYTQKSGAESSS 675
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 10230265 10233916 - ClCG09G010410.1 Cla09g00973 280393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g00973 675 SUPERFAMILY beta-beta-alpha zinc fingers 424 452 IPR036236 -
Cla09g00973 675 ProSitePatterns Zinc finger C2H2 type domain signature. 428 448 IPR013087 -
Cla09g00973 675 MobiDBLite consensus disorder prediction 349 408 - -
Cla09g00973 675 Gene3D Classic Zinc Finger 410 480 - -
Cla09g00973 675 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 168 662 - -
Cla09g00973 675 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 1 151 - -
Cla09g00973 675 SMART c2h2final6 426 448 IPR013087 -
Cla09g00973 675 SMART c2h2final6 475 508 IPR013087 -
Cla09g00973 675 SMART c2h2final6 513 535 IPR013087 -
Cla09g00973 675 ProSiteProfiles Zinc finger C2H2 type domain profile. 426 453 IPR013087 -
Cla09g00973 675 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 168 662 IPR044300 GO:0010044|GO:0010447
Cla09g00973 675 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 1 151 IPR044300 GO:0010044|GO:0010447
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01365 Cla-Chr1:27649044 Cla09g00973 Cla-Chr9:10230265 2.57E-77 dispersed
Cla01g01830 Cla-Chr1:33196601 Cla09g00973 Cla-Chr9:10230265 3.55E-79 dispersed
Cla02g02261 Cla-Chr2:37716394 Cla09g00973 Cla-Chr9:10230265 3.95E-27 dispersed
Cla09g00973 Cla-Chr9:10230265 Cla10g01643 Cla-Chr10:32073533 2.93E-25 dispersed
Cla09g00973 Cla-Chr9:10230265 Cla08g01505 Cla-Chr8:27861370 1.51E-25 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61721 None None None None Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g00973 - - csv:101220745 987.252