Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g00980 ATGGCGGACGTGATGCTGATGAACGAGATTGAGGAAACGGCTGGTCGGCTTGGGATAGATCTCTCCCAAGTTGATTTTGACGCTATTCGTCTTCCTCCTGGCGAGGATTTCGGAATCATTAGTGATGATGAAGAGGTTCTACAAGAGGAGAGTTTAGAGTTTGATTCTGGGTTCGGAAACATTATAGTTGTTGACAATCTTCCGGTTGTTCCTCCGGAGAAGTTTGAGAAGCTCGAAGGTGTTGTTCGTAAAATTTTTGGACAGATTGGGGTCATTAAGGATGATGGTCTATGGATGCCTGTTGATCCTACTACACAGAAAACTTTAGGTTACTGCTTTATTGAGTACGGCACTCCCCAGGAGGCTGAGCTTGCCAAAGAGAAAACTGATGGGTACAAGCTGGATAGAGCACATATTTTCACTGTTAACATGTTTGAGGACTTCGACAGATTTATGAAAGTCCCAGATGAGTGGGCCCCTCCTGAAATTATCCCATACACTCCTGGGGAAAATCTTCAACAGTGGCTTACTGATGAAAAAGCACGGGATCAGTTTGTTATCCGTGCTGGTTCTGATACTGAGGTTTTCTGGAATGATGCTCGACATTTGAAGCCTGAGCCTGTCTACAAGCGTCCATTCTGGACTGAGAGTTTTGTGCAGTGGTCCTCGTTGGGGACTTACCTAGCCACAATTCACCGACAGGGTGCTGCAGTTTGGGGTGGAGCAGGCACCTTTAACCGTCTGATGCGTTTTGCCCATCAACAGGTTAAGTTAATTGATTTTTCTCCTGGTGAGAAATATCTGGTAACTTACAGCAGCCATGAACCCAGCAATCCTCGTGATGCAAATAGGATTGTGATCAATATTTTTGATGTAAGAACTGGAAAAGTAATGAGAGATTTCAAGGGAAGTCCTGATGATTTTGCCATCGGAGGAACTGGTGGTGTTGCTGGGGTATCTTGGCCTGTTTTTAGGTGGGGTGGTGGGAAAGATGATAAATACTTTGCCAGGATTGGGAAGAATGTGATTTCAGTCTATGAAACAGAGACTTTCTCCCTTATCGACAAAAAGTCTTTGAAGGTTGAAAATGTTATGGATTTCTGCTGGTCCCCTACAGACCCCATTATTGCACTGTTTGTTCCTGAGTTAGGTGGTGGGAACCAACCGGCTAGGGTGAGTCTTGTCCAAATCCCCAGCAAGGAGGAGTTGAGACAGAAAAATCTTTTCAGTGTCAGTGATTGCAAAATGTACTGGCAAAGCAATGGGGATTATCTTGCTGTCAAGGTTGATAGATATACAAAGACGAAGAAAAGCACATACACAGGGTTTGAGCTTTTCCGCATAAAAGAACGGGATATACCAATTGAAGTGCTGGAGCTTGAGAATAAGAACGACAAGATCATTGCCTTTGCCTGGGAGCCAAAGGGGCACAGGTTTGCAGTTATTCATGGTGACAACCCAAGGCCAGATATTAGCTTTTACTCTATGCGAAGCACACACAACAGTGGCCGAGTGTCAAAACTTACAACTCTCAAAGGCAAGCAGGCCAATGCTCTTTTCTGGTCACCTGCTGGACGATTCATCATTCTTGCTGGTCTGAAAGGCTTCAACGGACAGTTGGAATTCTACAATGTTGATGAGCTGGAGACGATGGCAACTGCAGAGCATTTCATGGCTACTGATATTGAATGGGATCCCACTGGAAGGTATGTTGCAACTGCTGTAACTTCAGTCCACGAGATGGAAAATGGTTTCAACATATGGTCCTTTAATGGAAAACTCCTCTATCGAATCTTGAAGGATCATTTCTTCCAGTTTGCATGGCGGCCGAGGCCACCATCCTTCTTGAGTCCGGAAAAAGAGGAAGAGATAGCAAAGAACTTGAAGAAGTACAGCAAGAAGTATGAGGCTGAAGATCAGGATGTATCTATGCTACTGAGCGAGCAGGAGCGTGAGAAACGGAAAGCATTGAAGGACGAGTGGGACAAGTGGGTGAATGAATGGAAGAGATTGCACGAAGAAGAGAAGTTGTTGAGGCAGAAGCTGCGAGATGGTGAAGCCAGTGACGAAGAAGAGGAATACGAAGCCAAAGAGGTTGAAGTCGAAGAGATTTTGGACGTGTCGGAGGAAGTTTTGTTGTTTGATTTTGGGCAGTAA 2157 44.97 MADVMLMNEIEETAGRLGIDLSQVDFDAIRLPPGEDFGIISDDEEVLQEESLEFDSGFGNIIVVDNLPVVPPEKFEKLEGVVRKIFGQIGVIKDDGLWMPVDPTTQKTLGYCFIEYGTPQEAELAKEKTDGYKLDRAHIFTVNMFEDFDRFMKVPDEWAPPEIIPYTPGENLQQWLTDEKARDQFVIRAGSDTEVFWNDARHLKPEPVYKRPFWTESFVQWSSLGTYLATIHRQGAAVWGGAGTFNRLMRFAHQQVKLIDFSPGEKYLVTYSSHEPSNPRDANRIVINIFDVRTGKVMRDFKGSPDDFAIGGTGGVAGVSWPVFRWGGGKDDKYFARIGKNVISVYETETFSLIDKKSLKVENVMDFCWSPTDPIIALFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSNGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFAVIHGDNPRPDISFYSMRSTHNSGRVSKLTTLKGKQANALFWSPAGRFIILAGLKGFNGQLEFYNVDELETMATAEHFMATDIEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYRILKDHFFQFAWRPRPPSFLSPEKEEEIAKNLKKYSKKYEAEDQDVSMLLSEQEREKRKALKDEWDKWVNEWKRLHEEEKLLRQKLRDGEASDEEEEYEAKEVEVEEILDVSEEVLLFDFGQ 718
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 10292178 10296405 + ClCG09G010490.2 Cla09g00980 280400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g00980 718 CDD RRM_eIF3B 59 143 IPR034363 -
Cla09g00980 718 Gene3D - 441 620 IPR015943 GO:0005515
Cla09g00980 718 Gene3D - 181 440 IPR015943 GO:0005515
Cla09g00980 718 SUPERFAMILY RNA-binding domain, RBD 58 141 IPR035979 GO:0003676
Cla09g00980 718 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 82 136 IPR000504 GO:0003723
Cla09g00980 718 SMART rrm1_1 61 143 IPR000504 GO:0003723
Cla09g00980 718 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 60 147 IPR000504 GO:0003723
Cla09g00980 718 Hamap Eukaryotic translation initiation factor 3 subunit B [EIF3B]. 48 713 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Cla09g00980 718 Pfam Eukaryotic translation initiation factor eIF2A 406 606 IPR013979 -
Cla09g00980 718 SUPERFAMILY DPP6 N-terminal domain-like 217 600 - -
Cla09g00980 718 PIRSF Transl_init_eIF3b 7 713 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Cla09g00980 718 Coils Coil 687 707 - -
Cla09g00980 718 Gene3D - 55 154 IPR012677 -
Cla09g00980 718 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED 6 712 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Cla09g00980 718 PANTHER BNACNNG51870D PROTEIN 6 712 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g01444 Cla-Chr7:31692691 Cla09g00980 Cla-Chr9:10292178 8.73E-20 dispersed
Cla09g00980 Cla-Chr9:10292178 Cla09g00984 Cla-Chr9:10318322 3.31E-69 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g00980 K03253 - csv:101213144 1432.54