Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla09g00984 | ATGAGCTTTCTTGTTTACTCTAAAACCCTACTACAGGTCCAGGCATCCCCTCCCTCCCATTACCACCCAACTGAACCCCGACACGCCGTTCCTGCCCCGACGCTGTCTCACCGGCTGCCGGCGCACTCAGCTGCCGGAGTACCCCAGCCTTCCCTCTCGGCCTCGCCGATTTTCTGCTATCTCCAACGCTGGCATCTCTCTGTTCTTCTCATAATTGTCGGTTCTTTAACCTATCTTCCTCATTATACTTTTAGAAATTTTGTTTTCTGTTACCAAAATGATCTTAGGGCACATGAAATAAATTCTTGCAGTGAAAGATCTACCGCTCACCTGACTCTTGCCGCCGACAGAGCTAGTTCGTTCGTCATGGCGGACGTGATGCTGATGAAGGAGATTGAGGATACGGCTGGTCGGCTTGGGATAGATCTCTCCCAAGTTGATTTTGACGCCATTCGTCTACCTCCTGGTGACGATTTCGGAATTATTAGTGATGATGAAGAAGTTCTACAAGAGGAGAGTCTAGAGTTTGATTCTGGGTTCGGAAACATTATAGTTGTTGACAATCTTCCGGTTGTTCCTCCGGAGAAGTTTGAGAAGCTCGAAGGTGTTGTACGTAAAATTTTTGGGCAGATTGGAGTAATTAAGGATGATGGTTTGTGGATGCCTGTTGACCCTACTACACAGAAAACTTTAGGTTACTGCTTTATCGAGTATGGCACTCCACAGTCTCCCATCTTTGCCACTTTTGGTTCTTGCTCGCATTTGATGAAGTCCAATAGAGAGATAGATATTCCTTTGGATGATGCTGGCAGTTACTTTCAACCTCTTCACAATGCATCCATTGTAATGGTGCACTGCACCTCCCTTATACCATCTCCCTATTTCTCATTTAGAGGTGGAATGCTTGAATACTCTAGATGGATCTTTATGCTTGCGCCCGTTTGGCCTAACTTTTACCAGTATTATTTTGTCGTTGCATTAGTGGTAATATACCTTGTTAAAATGGTCTTGAAAATATTTCTCTTTGTAGCATTCAGAAAGTGTACATTAAATGACAGTGTGATATTTTGGATTACCACTAGACATGCATTTCATCCAGGAATGTGCTTAGAGGCTGAGCTTGCTAAAGAGAAAACTGATGGGTACAAGCTGGATAGAGCACATATTTTCACTGTCAACATGTTTGAGGACTTCGACAGATTCATGAAAGTCCCAGATGAGTGGGCCCCTCCTGAAATTAGCCCATATACTCCTGGGGAAAATCTTCAAAAGTGGCTTACTGATGAAAAAGCACGGGATCAGTTTGTTATTCGTTCTGGTTCTGACACTGAGGTCTTCTGGAACGATGCTAGGCATTTGAAGCCTGAGCCTGTCTACAAGCGCACATTCTGGACTGAGAGTTTTGTGCAGTGGTCCTCATTGGGGACTTACCTAGCGACAATTCACCGACAGGGTGCTGCAGTTTGGGGTGGAGCAGGTACCTTTAACCGTCTGATGCGCTTTGCCCATCAACAGGTTAAGTTAATTGATTTTTCTCCTGGTGAGAAATATCTGGTGACTTACAGCAGTCATGAGCCCAGCAATCCCCGTGATGCAAATAGGATTGTGATCAATATTTTTGATTTAAGAACTGGAAAAGTAATGAGAGATTTCAAGGGAAGTCCTGATGATTTTGCTATTGGAGGAACAGGTGGTGTTGCCGGTGTATCTTGGCCTGTTTTTAGGTGGGGTGGTGGGAAAGATGATAAATACTTTGCCAGAATTGGGAAGAATGTGATTTCAGTCTATGAAACAGAGACTTTCTCCCTTATTGACAAAAAATCTTTGAAGGTTGAAAATGTTATGGATTTCTGCTGGTCCCCTACAGATCCCATTCTTGCTCTGTTTGTTCCTGAGCTAGGTGGTGGGAACCAACCAGCTAGGGTGAGTCTTGTTCAAATCCCCAGCAAGGAGGAGTTGAGACAGAAAAATCTTTTCAGTGTTAGTGATTGCAAAATGTACTGGCAAAGCAATGGAGATTATCTTGCTGTCAAGGTTGATAGATATACAAAGACGAAGAAAAGCACATACACAGGGTTTGAGCTTTTCCGCATAAAAGAGCGGGATATTCCCATTGAAGTGTTGGAGCTTGAGAACAAGAACGACAAGATAATTGCCTTTTCCTGGGAGCCAAAGGGGCATAGGTTTGCAGTTATTCATGGTGACAACCCAAGGCCAGATATTAGCTTTTACTCTATGCGAAGCACACACAACAGTGGCCGAGTGTCAAAGCTTACAACTCTCAAAGGCAAGCAAGCCAATGCTCTTTTCTGGTCGCCTGCTGGACGCTTTATTATTCTTGCTGGTCTGAAAGGTTTCAACGGACAGTTGGAATTCTACAATGTTGATGAGCTGGAGACGATGGCAACTGCGGAGCATTTCATGGCTACTGATATTGAATGGGATCCTACTGGAAGGTATGTTGCTACTGCTGTAACTTCAGTTCACGAGATGGAGAATGGTTTCAACATATGGTCCTTTAATGGAAAACTCCTCTATCGAATCTTGAAGGACCATTTCTTTCAGTTTGCATGGCGGCCGAGGCCACCATCCTTCTTGAGTCCCGAGCAAGAGGAAGAGATAGCAAAGAATTTGAAGAAGTACAGTAAGAAGTACGAGGCTGAAGATCAGGATGTATCTATGCTACTGAGCGAGCAAGATCGCGAGAAACGGAGAATGTTGAAGGATGAGTGGGACAAGTGGGTGAATGAATGGAAGAGATTGCACGAAGAAGAGAAGTTGTTGCGGCAGAAGCTGCGGGATGGCGAAGCCAGCGACGAAGAAGAGGAATACGAAGCCAAAGAGGTTGAAGTCGAAGAGATTCTGGATGTGTCGGAGGAAGTTTTGTCCTTTGATTTTGGGCAGGAATGA | 2910 | 44.54 | MSFLVYSKTLLQVQASPPSHYHPTEPRHAVPAPTLSHRLPAHSAAGVPQPSLSASPIFCYLQRWHLSVLLIIVGSLTYLPHYTFRNFVFCYQNDLRAHEINSCSERSTAHLTLAADRASSFVMADVMLMKEIEDTAGRLGIDLSQVDFDAIRLPPGDDFGIISDDEEVLQEESLEFDSGFGNIIVVDNLPVVPPEKFEKLEGVVRKIFGQIGVIKDDGLWMPVDPTTQKTLGYCFIEYGTPQSPIFATFGSCSHLMKSNREIDIPLDDAGSYFQPLHNASIVMVHCTSLIPSPYFSFRGGMLEYSRWIFMLAPVWPNFYQYYFVVALVVIYLVKMVLKIFLFVAFRKCTLNDSVIFWITTRHAFHPGMCLEAELAKEKTDGYKLDRAHIFTVNMFEDFDRFMKVPDEWAPPEISPYTPGENLQKWLTDEKARDQFVIRSGSDTEVFWNDARHLKPEPVYKRTFWTESFVQWSSLGTYLATIHRQGAAVWGGAGTFNRLMRFAHQQVKLIDFSPGEKYLVTYSSHEPSNPRDANRIVINIFDLRTGKVMRDFKGSPDDFAIGGTGGVAGVSWPVFRWGGGKDDKYFARIGKNVISVYETETFSLIDKKSLKVENVMDFCWSPTDPILALFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSNGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIIAFSWEPKGHRFAVIHGDNPRPDISFYSMRSTHNSGRVSKLTTLKGKQANALFWSPAGRFIILAGLKGFNGQLEFYNVDELETMATAEHFMATDIEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYRILKDHFFQFAWRPRPPSFLSPEQEEEIAKNLKKYSKKYEAEDQDVSMLLSEQDREKRRMLKDEWDKWVNEWKRLHEEEKLLRQKLRDGEASDEEEEYEAKEVEVEEILDVSEEVLSFDFGQE | 969 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 10318322 | 10324496 | - | ClCG09G010530.2 | Cla09g00984 | 280404 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla09g00984 | 969 | SUPERFAMILY | RNA-binding domain, RBD | 180 | 252 | IPR035979 | GO:0003676 | |
Cla09g00984 | 969 | Pfam | Eukaryotic translation initiation factor eIF2A | 656 | 856 | IPR013979 | - | |
Cla09g00984 | 969 | Hamap | Eukaryotic translation initiation factor 3 subunit B [EIF3B]. | 170 | 963 | IPR011400 | GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369 | |
Cla09g00984 | 969 | PANTHER | BNACNNG51870D PROTEIN | 128 | 243 | - | - | |
Cla09g00984 | 969 | PANTHER | BNACNNG51870D PROTEIN | 370 | 962 | - | - | |
Cla09g00984 | 969 | SUPERFAMILY | DPP6 N-terminal domain-like | 467 | 850 | - | - | |
Cla09g00984 | 969 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED | 128 | 243 | IPR011400 | GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369 | |
Cla09g00984 | 969 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED | 370 | 962 | IPR011400 | GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369 | |
Cla09g00984 | 969 | CDD | RRM_eIF3B | 181 | 242 | IPR034363 | - | |
Cla09g00984 | 969 | Coils | Coil | 937 | 957 | - | - | |
Cla09g00984 | 969 | Gene3D | - | 430 | 691 | IPR015943 | GO:0005515 | |
Cla09g00984 | 969 | Gene3D | - | 705 | 861 | IPR011042 | - | |
Cla09g00984 | 969 | Gene3D | - | 181 | 247 | IPR012677 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla09g00980 | Cla-Chr9:10292178 | Cla09g00984 | Cla-Chr9:10318322 | 3.31E-69 | proximal |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla09g00984 | K03253 | - | csv:101213144 | 1200.27 |