Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g00984 ATGAGCTTTCTTGTTTACTCTAAAACCCTACTACAGGTCCAGGCATCCCCTCCCTCCCATTACCACCCAACTGAACCCCGACACGCCGTTCCTGCCCCGACGCTGTCTCACCGGCTGCCGGCGCACTCAGCTGCCGGAGTACCCCAGCCTTCCCTCTCGGCCTCGCCGATTTTCTGCTATCTCCAACGCTGGCATCTCTCTGTTCTTCTCATAATTGTCGGTTCTTTAACCTATCTTCCTCATTATACTTTTAGAAATTTTGTTTTCTGTTACCAAAATGATCTTAGGGCACATGAAATAAATTCTTGCAGTGAAAGATCTACCGCTCACCTGACTCTTGCCGCCGACAGAGCTAGTTCGTTCGTCATGGCGGACGTGATGCTGATGAAGGAGATTGAGGATACGGCTGGTCGGCTTGGGATAGATCTCTCCCAAGTTGATTTTGACGCCATTCGTCTACCTCCTGGTGACGATTTCGGAATTATTAGTGATGATGAAGAAGTTCTACAAGAGGAGAGTCTAGAGTTTGATTCTGGGTTCGGAAACATTATAGTTGTTGACAATCTTCCGGTTGTTCCTCCGGAGAAGTTTGAGAAGCTCGAAGGTGTTGTACGTAAAATTTTTGGGCAGATTGGAGTAATTAAGGATGATGGTTTGTGGATGCCTGTTGACCCTACTACACAGAAAACTTTAGGTTACTGCTTTATCGAGTATGGCACTCCACAGTCTCCCATCTTTGCCACTTTTGGTTCTTGCTCGCATTTGATGAAGTCCAATAGAGAGATAGATATTCCTTTGGATGATGCTGGCAGTTACTTTCAACCTCTTCACAATGCATCCATTGTAATGGTGCACTGCACCTCCCTTATACCATCTCCCTATTTCTCATTTAGAGGTGGAATGCTTGAATACTCTAGATGGATCTTTATGCTTGCGCCCGTTTGGCCTAACTTTTACCAGTATTATTTTGTCGTTGCATTAGTGGTAATATACCTTGTTAAAATGGTCTTGAAAATATTTCTCTTTGTAGCATTCAGAAAGTGTACATTAAATGACAGTGTGATATTTTGGATTACCACTAGACATGCATTTCATCCAGGAATGTGCTTAGAGGCTGAGCTTGCTAAAGAGAAAACTGATGGGTACAAGCTGGATAGAGCACATATTTTCACTGTCAACATGTTTGAGGACTTCGACAGATTCATGAAAGTCCCAGATGAGTGGGCCCCTCCTGAAATTAGCCCATATACTCCTGGGGAAAATCTTCAAAAGTGGCTTACTGATGAAAAAGCACGGGATCAGTTTGTTATTCGTTCTGGTTCTGACACTGAGGTCTTCTGGAACGATGCTAGGCATTTGAAGCCTGAGCCTGTCTACAAGCGCACATTCTGGACTGAGAGTTTTGTGCAGTGGTCCTCATTGGGGACTTACCTAGCGACAATTCACCGACAGGGTGCTGCAGTTTGGGGTGGAGCAGGTACCTTTAACCGTCTGATGCGCTTTGCCCATCAACAGGTTAAGTTAATTGATTTTTCTCCTGGTGAGAAATATCTGGTGACTTACAGCAGTCATGAGCCCAGCAATCCCCGTGATGCAAATAGGATTGTGATCAATATTTTTGATTTAAGAACTGGAAAAGTAATGAGAGATTTCAAGGGAAGTCCTGATGATTTTGCTATTGGAGGAACAGGTGGTGTTGCCGGTGTATCTTGGCCTGTTTTTAGGTGGGGTGGTGGGAAAGATGATAAATACTTTGCCAGAATTGGGAAGAATGTGATTTCAGTCTATGAAACAGAGACTTTCTCCCTTATTGACAAAAAATCTTTGAAGGTTGAAAATGTTATGGATTTCTGCTGGTCCCCTACAGATCCCATTCTTGCTCTGTTTGTTCCTGAGCTAGGTGGTGGGAACCAACCAGCTAGGGTGAGTCTTGTTCAAATCCCCAGCAAGGAGGAGTTGAGACAGAAAAATCTTTTCAGTGTTAGTGATTGCAAAATGTACTGGCAAAGCAATGGAGATTATCTTGCTGTCAAGGTTGATAGATATACAAAGACGAAGAAAAGCACATACACAGGGTTTGAGCTTTTCCGCATAAAAGAGCGGGATATTCCCATTGAAGTGTTGGAGCTTGAGAACAAGAACGACAAGATAATTGCCTTTTCCTGGGAGCCAAAGGGGCATAGGTTTGCAGTTATTCATGGTGACAACCCAAGGCCAGATATTAGCTTTTACTCTATGCGAAGCACACACAACAGTGGCCGAGTGTCAAAGCTTACAACTCTCAAAGGCAAGCAAGCCAATGCTCTTTTCTGGTCGCCTGCTGGACGCTTTATTATTCTTGCTGGTCTGAAAGGTTTCAACGGACAGTTGGAATTCTACAATGTTGATGAGCTGGAGACGATGGCAACTGCGGAGCATTTCATGGCTACTGATATTGAATGGGATCCTACTGGAAGGTATGTTGCTACTGCTGTAACTTCAGTTCACGAGATGGAGAATGGTTTCAACATATGGTCCTTTAATGGAAAACTCCTCTATCGAATCTTGAAGGACCATTTCTTTCAGTTTGCATGGCGGCCGAGGCCACCATCCTTCTTGAGTCCCGAGCAAGAGGAAGAGATAGCAAAGAATTTGAAGAAGTACAGTAAGAAGTACGAGGCTGAAGATCAGGATGTATCTATGCTACTGAGCGAGCAAGATCGCGAGAAACGGAGAATGTTGAAGGATGAGTGGGACAAGTGGGTGAATGAATGGAAGAGATTGCACGAAGAAGAGAAGTTGTTGCGGCAGAAGCTGCGGGATGGCGAAGCCAGCGACGAAGAAGAGGAATACGAAGCCAAAGAGGTTGAAGTCGAAGAGATTCTGGATGTGTCGGAGGAAGTTTTGTCCTTTGATTTTGGGCAGGAATGA 2910 44.54 MSFLVYSKTLLQVQASPPSHYHPTEPRHAVPAPTLSHRLPAHSAAGVPQPSLSASPIFCYLQRWHLSVLLIIVGSLTYLPHYTFRNFVFCYQNDLRAHEINSCSERSTAHLTLAADRASSFVMADVMLMKEIEDTAGRLGIDLSQVDFDAIRLPPGDDFGIISDDEEVLQEESLEFDSGFGNIIVVDNLPVVPPEKFEKLEGVVRKIFGQIGVIKDDGLWMPVDPTTQKTLGYCFIEYGTPQSPIFATFGSCSHLMKSNREIDIPLDDAGSYFQPLHNASIVMVHCTSLIPSPYFSFRGGMLEYSRWIFMLAPVWPNFYQYYFVVALVVIYLVKMVLKIFLFVAFRKCTLNDSVIFWITTRHAFHPGMCLEAELAKEKTDGYKLDRAHIFTVNMFEDFDRFMKVPDEWAPPEISPYTPGENLQKWLTDEKARDQFVIRSGSDTEVFWNDARHLKPEPVYKRTFWTESFVQWSSLGTYLATIHRQGAAVWGGAGTFNRLMRFAHQQVKLIDFSPGEKYLVTYSSHEPSNPRDANRIVINIFDLRTGKVMRDFKGSPDDFAIGGTGGVAGVSWPVFRWGGGKDDKYFARIGKNVISVYETETFSLIDKKSLKVENVMDFCWSPTDPILALFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSNGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIIAFSWEPKGHRFAVIHGDNPRPDISFYSMRSTHNSGRVSKLTTLKGKQANALFWSPAGRFIILAGLKGFNGQLEFYNVDELETMATAEHFMATDIEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYRILKDHFFQFAWRPRPPSFLSPEQEEEIAKNLKKYSKKYEAEDQDVSMLLSEQDREKRRMLKDEWDKWVNEWKRLHEEEKLLRQKLRDGEASDEEEEYEAKEVEVEEILDVSEEVLSFDFGQE 969
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 10318322 10324496 - ClCG09G010530.2 Cla09g00984 280404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g00984 969 SUPERFAMILY RNA-binding domain, RBD 180 252 IPR035979 GO:0003676
Cla09g00984 969 Pfam Eukaryotic translation initiation factor eIF2A 656 856 IPR013979 -
Cla09g00984 969 Hamap Eukaryotic translation initiation factor 3 subunit B [EIF3B]. 170 963 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Cla09g00984 969 PANTHER BNACNNG51870D PROTEIN 128 243 - -
Cla09g00984 969 PANTHER BNACNNG51870D PROTEIN 370 962 - -
Cla09g00984 969 SUPERFAMILY DPP6 N-terminal domain-like 467 850 - -
Cla09g00984 969 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED 128 243 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Cla09g00984 969 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED 370 962 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Cla09g00984 969 CDD RRM_eIF3B 181 242 IPR034363 -
Cla09g00984 969 Coils Coil 937 957 - -
Cla09g00984 969 Gene3D - 430 691 IPR015943 GO:0005515
Cla09g00984 969 Gene3D - 705 861 IPR011042 -
Cla09g00984 969 Gene3D - 181 247 IPR012677 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla09g00980 Cla-Chr9:10292178 Cla09g00984 Cla-Chr9:10318322 3.31E-69 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g00984 K03253 - csv:101213144 1200.27