Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g00995 ATGTTTTTGATAATCATGGCCGTCGATGCAAGTGCTGAAGATCAATCTCACAAGGCCCATAGGTCTCGTAAATCTGGTCCCAATGCAAAGAAGAAACCAACGAATGATAAAGGGAAGAAGAAGGAGGAAGTTTCTGAGAATGATAGGAAGCGGAATCCCAAGGCTTTTGCTTTTAATTCGTCAGTTAAAGCCAAGCGTTTGCAATCTCGCGCTGTCGAGAAAGAACAACGTAGGCTTCATGTTCCCATAATCGATCGTTGTTATGGTGAACCGGCTCCATACATTATTGTTGTACAAGGACCTCCCCAGGTTGGGAAGTCTCTATTAATAAAGTCTCTTGTTAAGCATTATACCAAACATAATTTACCTGATGTTCGTGGGCCGATTACAATTGTGTCAGGTAAACAAAGGCGGTTGCAGTTTGTAGAGTGCCCAAATGATATCAATGGGATGATTGACGCAGCAAAGTTTGCTGATTTGACTTTGCTTCTAATTGATGGTAATTACGGTTTTGAGATGGAGACTTTTGAGTTTCTCAACATTTTACATCATCATGGACTTCCAAAAGTTATGGGAGTTCTTACGCACCTTGACAAGTTCAAGGATGCAAAAAAATTAAGGAAAACGAAGCAGCGTCTTAAACACCGCTTTTGGACGGAGATACGTACCGGAGCAAAATTATTTTATCTATCTGGGCTTATACATGGGAAATACCCTAAACGTGAGGTACACAATCTTGCTCGGTTTATCTCTGTGATGAAGTTTCAGCCTCTTTCTTGGCGTACCAACCATCCATATGTTTTAGTAGACCGATTTGAAGATGTCACTCCACCTGAAAGAGTGCATACAAACAATAAATGTGATAGAAATATCACACTTTATGGTTATCTTCGAGGTTGTAATTTGAAGTACGGAACTAAGGTTCACATTGCTGGCGTGGGTGATTTTGAATTGGCTAGTGTAACCAGTTTGGCTGATCCTTGTCCTTTGCCTTCTGCTGCCAAAAAGAAAGGACTACGTGATAAGGAGAAATTGTTTTATGCTCCTATGTCTGGGCTTGGAGATCTCTTGTATGACAAGGATGCTGTTTATATAAACATCAATGACCATTTTGTTCAGTATTCCAAAGTTGATGATGATAAAGAAGTACCTACAGGGAAAGGTAAGGATCAAGATGTGGGTGAGGTTTTGGTGAAGTCTCTCCAGAGCACAAAATATTCAGTTGATGAGAAGTTAGAGAAGAGCTTCATTTCCCTTTTTGGCAGAAAACCTGACAACTCATCTGGAGCTAGGGGTGACGCAAACAATACTCTTGAAAATTCAATTGGGTTTCATGAAATTAAGCCGTCAGAGGAACACCAGTCTGGGTCCCTAGAAGTTGATAGACCTGGTGTAGTACATGATGCTGATGATTCGGAGTCTTCAGATGAAGATGACCTTATCGAGAGAAAGGCTAAATTTGAAAGTGAGGGCACTGATGAAGAAGGATATAATGATTTATTAAATGAGAAGTCCCCTGTTGAAGACCATATGAAGGAACATGTTGAATTTCATGAAGGGAGGCTTAGGAGGAAAGCTGTTTTTGGAAATGATGTTGATTCTGATGATCTCATGGAGGATTCAGCTGAAGAAGATGACGATGATGATGACAGTGATGTTGATGAGACTGGCATGGGTAACACATCAAAGTGGAAGGAGTCTTTGGCTGAAAGGACCAGCTCTAGGCAACATGTGAATCTGATGAAACTTGTGTACGGGAAATTGAGGCAAACATCTACTACCTCAAGCAACGAAGCACATGATACTAGTGATGAAGAAAGTGATAGGGGTGAATTCTTTAGGCCTATAGGCGAGATAAATAAGGACGATCGCAAGGTGGATGGTGAAAATGCCAAATCTGAGGATTGTTCCAAATATATTGAAGTTTCCAATGATCTTGATCCTGAAAGCATTCGTGACAGATTTGTCACGGGTGATTGGTCAAAAGCTGCTCTCAGAAATGAATCTTCTGAAGTCCAATTTGAAGATGATGATAATGTCTATGCTGATTTTGAAGATCTAGAAACTGGTGAGAAGTATGAGAGTTCTCATGCTGAGAATACTACTGATGCAGTGCGAAAGGCAAAAGACTCAACAAATGAGGAACGCAGGCTGAAAAAGCTTGCTCTTCGTGCACAGTTTGATGCTGAATATCCTTTTGATGATTTTGATTTGTACTCTTCCTTTTTTTCCCCACCCTCTTTTAGAAATGAAACAGGAGTTTGTTGCATCCTTAATTTTGACCTACATATGTTGGATCTAAGGCAGCAGAGGATGAAAGTGATAAAGAAGATGAGGCCAATGGAAATGAAGGAGGAAATTGAAATTAGGAAACAGAGGAATAAAGCTGAACTTGATAATATTGATGAAGCCTTCCGATTGAGGATTGAGGGCTTCCAATCAGGGACATACGTAAGATTGGAAGTTCATGGTGTTGCTTGTGAGATGGTTGAACATTTTGATCCTTGCCAGCCTATTTTGGTTGGAGGTATTGGTCCTGGGGAGGACGGTGTTGGATACATGCAGGTCAGACTAAAACGACATAGGTGGTACAAGAAGGTACTGAAGACTAGAGATCCATTAATTTTTTCTATTGGATGGAGACGTTACCAAAGTACCCCTGTTTATGCAATTGAGGATTCAAACGGGAGGCACCGCATGCTTAAATATACACCTGAACATATGCACTGTCTAGCAATATTCTGGGGCCCTCTGGCACCTCCTAACACAGGGGTTATTGCTGTTCAGACTTTATCTAGCAACATTCAGACGTCATTCAGGATAGCTGCAACAGCTACTGTGCTCCAATCTAATCATGAAGAGCGGGTGGTCAAGAAAATCAAGCTAGTTGGTTATCCATGCAAAATTTTTAAGAAGACAGCACTTATAAAAGATATGTTTACTTCGGACCTTGAAATAGCTCGTTTTGAAGGTGCATCTATTCGAACTGTCAGTGGAATCCGGGGCCAGGTCAAGAAGGCTGCAAAAGAGGAGATTGGTAACCAGCCCAAAAAGAAAGGAGGACTACCCAAGGAAGGGATTGCTCGATGTACCTTCGAGGACAAGATTCGGATGAGTGACGTAGTTTTCCTACGTGCATGGACTAAAGTTGAAATTCCTCAATTCTACAACCCGCTGACAACAGCATTGCAACCTCGCGACCGAATATGGCAAGGGATGAAAACTGTGGCTGAACTTAGGAAAGAACATAATCTTCCCATTCCTGTGAACAAGGATTCACTCTACAAGCCAATCGAGAGGCAGAAACGGAAGTTCAATCCATTGGTAATTCCTAAATCATTACAAGCAGCCTTGCCATTCAAATCAAAGCCAAAGGATACACCTAGTCAGCAGAGGCCACTTCTTGAAAAACGACGAGCTGTTGTTATGGAGCCTCATGATCGGAAAGTTCATGCTCTTGTTCAGCAGCTTCAACTTATGAGACAAGAGAAAATGAAGAAACGAAAGCTCAAAGAAGAGAAGAAGAGAAAAGAGCTTGAAGCCGAGCACGCCAAAAACGAGCAGCTGTCTAGAAAGCGGCAAAGAGAAGAACGTCGGGTGAGATATAGAGAACAAGATAAACTGAGAAAGAAAATTCAAAGAAGAAAAAACCGAGTGATTATGAAAACAGAAATGGCTCAAAAAACCAACTCTTCCCTCTGCTCTGTTCCACTTCTGTTTCTCCTCACTCTTCTTTTAACCCTCTCTTTCTCCCTCTTCCTCCTCTTCACTCCATCTTCCAACCCCACCCATTCTTCTTCTTCTTCTTCTTCTCTTTTCAATCCAAACATCTCTCCTTCTTCACACCAATCCATCAAAGTCTACATTGCAGACCTTCCCAGATCCCTCAACTATGGCCTTCTTGATCAGTATTGGGCCATCCAGTCCGATTCCAGGCTCGGCAGCGACGCAGATCGTGAAATTAGATCGACCCAGATGAAGAAAACCCTCGAATTCCCTCCATATCCTGAGAATCCATTGATCAAGCAGTACAGTGCGGAGTATTGGATTTTGGGGGATTTGATGACGCCACCGTCGCAGAGGGATGGATCTTTTGCGAAGAGGGTTTTTGTGGCTGAGGAAGCCGATGTGGTTTTTGTGCCATTTTTCGCGACCATGAGTGCTGAAATGCAGTTGGAAGTGGCGAAGGGTGCGTTTAGGAAGAAGGTGGGGAATGAGGACTATGAACGGCAGAGGAGTGTGATGGATTTTCTTAAGAGTACTGATGCTTGGAAGAAGTCTGGTGGGAGAGACCATGTTTTTGTTCTCACTGACCCAGTTGCGATGTGGCATGTCAAAGCAGAGATAGCTCCGGCTGTTCTGCTTGTGGTCGATTTTGGCGGTTGGTTCAGGCTTGACGCAAAATCATCTAACAGTTCCTCGCCAGATATGATTCAGCACACTCAAGTTTCAGTACTTAAGGATGTGATTGTTCCATATACCCATTTACTACCTAGGCTGCACTTATCAGAAAACAAGAAGCGCCAGACCTTACTTTATTTCAAAGGGGCGAAACATAGGCATCGGGCGCTTATTCATGGATTTACTCGGGTTCAGTTTGCTGTGTTCAAGTTAGTCATTGGAGAAAACTTGGGAGGACTGGTCAGGGAGAAACTCTGGGACTTGCTGATTAATGAGCCTGATGTTATAATGGAAGAAGGGTTCCCGAATGCTACAGGTAAGGAGCAATCTATCAGAGGGATGAGATCATCAGAATTCTGCTTGCACCCAGCTGGGGATACCCCAACATCCTGCCGTCTTTTCGACGCCATCCAAAGTCTCTGTATACCTGTGGTTGTGAGTGACAACATCGAGCTTCCATTTGAAGGCATGGTGGATTACTCAGAATTCTCTGTTTTTGTGGCTGTTAGTGATGCATTGAAACCAAACTGGCTTGCAAAGCACCTTAGAACCATACCAGAAGAGCAAAGGAACAGATTTCGGCAATATATGGCTTGGGTTCAACCTGTTTTCGAGTACGACAATGGCCATCTGGGTGGTATTGGACCAGTTCCTCCAGATGGTGCTGTAAATCACATATGGAGAAAAGTCCACCAAAAGCTCCCTATGATAAAAGAAGCCATTGCTAGGGAGAGAAGAAAACCAGAGGGTGTGTCAGTTCCTCTTCGCTGCCATTGTACTTAA 5184 42.8 MFLIIMAVDASAEDQSHKAHRSRKSGPNAKKKPTNDKGKKKEEVSENDRKRNPKAFAFNSSVKAKRLQSRAVEKEQRRLHVPIIDRCYGEPAPYIIVVQGPPQVGKSLLIKSLVKHYTKHNLPDVRGPITIVSGKQRRLQFVECPNDINGMIDAAKFADLTLLLIDGNYGFEMETFEFLNILHHHGLPKVMGVLTHLDKFKDAKKLRKTKQRLKHRFWTEIRTGAKLFYLSGLIHGKYPKREVHNLARFISVMKFQPLSWRTNHPYVLVDRFEDVTPPERVHTNNKCDRNITLYGYLRGCNLKYGTKVHIAGVGDFELASVTSLADPCPLPSAAKKKGLRDKEKLFYAPMSGLGDLLYDKDAVYININDHFVQYSKVDDDKEVPTGKGKDQDVGEVLVKSLQSTKYSVDEKLEKSFISLFGRKPDNSSGARGDANNTLENSIGFHEIKPSEEHQSGSLEVDRPGVVHDADDSESSDEDDLIERKAKFESEGTDEEGYNDLLNEKSPVEDHMKEHVEFHEGRLRRKAVFGNDVDSDDLMEDSAEEDDDDDDSDVDETGMGNTSKWKESLAERTSSRQHVNLMKLVYGKLRQTSTTSSNEAHDTSDEESDRGEFFRPIGEINKDDRKVDGENAKSEDCSKYIEVSNDLDPESIRDRFVTGDWSKAALRNESSEVQFEDDDNVYADFEDLETGEKYESSHAENTTDAVRKAKDSTNEERRLKKLALRAQFDAEYPFDDFDLYSSFFSPPSFRNETGVCCILNFDLHMLDLRQQRMKVIKKMRPMEMKEEIEIRKQRNKAELDNIDEAFRLRIEGFQSGTYVRLEVHGVACEMVEHFDPCQPILVGGIGPGEDGVGYMQVRLKRHRWYKKVLKTRDPLIFSIGWRRYQSTPVYAIEDSNGRHRMLKYTPEHMHCLAIFWGPLAPPNTGVIAVQTLSSNIQTSFRIAATATVLQSNHEERVVKKIKLVGYPCKIFKKTALIKDMFTSDLEIARFEGASIRTVSGIRGQVKKAAKEEIGNQPKKKGGLPKEGIARCTFEDKIRMSDVVFLRAWTKVEIPQFYNPLTTALQPRDRIWQGMKTVAELRKEHNLPIPVNKDSLYKPIERQKRKFNPLVIPKSLQAALPFKSKPKDTPSQQRPLLEKRRAVVMEPHDRKVHALVQQLQLMRQEKMKKRKLKEEKKRKELEAEHAKNEQLSRKRQREERRVRYREQDKLRKKIQRRKNRVIMKTEMAQKTNSSLCSVPLLFLLTLLLTLSFSLFLLFTPSSNPTHSSSSSSSLFNPNISPSSHQSIKVYIADLPRSLNYGLLDQYWAIQSDSRLGSDADREIRSTQMKKTLEFPPYPENPLIKQYSAEYWILGDLMTPPSQRDGSFAKRVFVAEEADVVFVPFFATMSAEMQLEVAKGAFRKKVGNEDYERQRSVMDFLKSTDAWKKSGGRDHVFVLTDPVAMWHVKAEIAPAVLLVVDFGGWFRLDAKSSNSSSPDMIQHTQVSVLKDVIVPYTHLLPRLHLSENKKRQTLLYFKGAKHRHRALIHGFTRVQFAVFKLVIGENLGGLVREKLWDLLINEPDVIMEEGFPNATGKEQSIRGMRSSEFCLHPAGDTPTSCRLFDAIQSLCIPVVVSDNIELPFEGMVDYSEFSVFVAVSDALKPNWLAKHLRTIPEEQRNRFRQYMAWVQPVFEYDNGHLGGIGPVPPDGAVNHIWRKVHQKLPMIKEAIARERRKPEGVSVPLRCHCT 1727
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 10461982 10479343 + ClCG09G010650.2 Cla09g00995 280415

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g00995 1727 MobiDBLite consensus disorder prediction 29 53 - -
Cla09g00995 1727 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 93 222 IPR027417 -
Cla09g00995 1727 SMART DUF663_2 704 1050 IPR007034 -
Cla09g00995 1727 MobiDBLite consensus disorder prediction 478 509 - -
Cla09g00995 1727 MobiDBLite consensus disorder prediction 599 632 - -
Cla09g00995 1727 PANTHER RIBOSOME BIOGENESIS PROTEIN 482 733 IPR039761 GO:0042254
Cla09g00995 1727 MobiDBLite consensus disorder prediction 691 711 - -
Cla09g00995 1727 MobiDBLite consensus disorder prediction 11 54 - -
Cla09g00995 1727 Pfam Exostosin family 1283 1647 IPR040911 -
Cla09g00995 1727 MobiDBLite consensus disorder prediction 1164 1203 - -
Cla09g00995 1727 CDD BMS1 55 284 IPR037875 GO:0005525
Cla09g00995 1727 Pfam 40S ribosome biogenesis protein Tsr1 and BMS1 C-terminal 786 1051 IPR007034 -
Cla09g00995 1727 Gene3D - 94 257 IPR027417 -
Cla09g00995 1727 ProSiteProfiles Bms1-type guanine nucleotide-binding (G) domain profile. 92 256 IPR030387 -
Cla09g00995 1727 PANTHER BNAC08G44910D PROTEIN 15 429 - -
Cla09g00995 1727 Coils Coil 1153 1199 - -
Cla09g00995 1727 PANTHER RIBOSOME BIOGENESIS PROTEIN 783 1241 IPR039761 GO:0042254
Cla09g00995 1727 SMART aarp2cn2 242 328 IPR012948 GO:0005634|GO:0042254
Cla09g00995 1727 Coils Coil 784 804 - -
Cla09g00995 1727 Pfam AARP2CN (NUC121) domain 242 327 IPR012948 GO:0005634|GO:0042254
Cla09g00995 1727 PANTHER RIBOSOME BIOGENESIS PROTEIN 15 429 IPR039761 GO:0042254
Cla09g00995 1727 MobiDBLite consensus disorder prediction 447 470 - -
Cla09g00995 1727 MobiDBLite consensus disorder prediction 532 575 - -
Cla09g00995 1727 MobiDBLite consensus disorder prediction 589 632 - -
Cla09g00995 1727 MobiDBLite consensus disorder prediction 447 509 - -
Cla09g00995 1727 MobiDBLite consensus disorder prediction 557 575 - -
Cla09g00995 1727 PANTHER BNAC08G44910D PROTEIN 482 733 - -
Cla09g00995 1727 PANTHER BNAC08G44910D PROTEIN 783 1241 - -
Cla09g00995 1727 MobiDBLite consensus disorder prediction 533 555 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g00995 K14569 BMS1; ribosome biogenesis protein BMS1 - csv:101222795 1998.02
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla09g00907 Cla-Chr9:9452877 Cla09g00995 Cla-Chr9:10461982 0 dispersed
Cla09g00995 Cla-Chr9:10461982 Cla08g00659 Cla-Chr8:18865284 7.03E-13 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1302 . . . . . . . . . . . Cma09g01168 . . . Cpe06g00920 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma01g00784 . Sed10g1782 . Cmo09g01168 . . . Car09g01044 . . Bhi09g01618 Tan01g2956 Cmetu01g2252 . . Mch11g1579 . Cla09g00995 Cam09g1053 Cec09g1054 Cco09g1069 . . Cre09g1017 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003630 1 1 1 1 1 2 2 2 2 1 2 2 2 1 1 2 2 1 1 2 1 1 1 1 1 2 1 3 1 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla09g00995 Cla_Chr09 FPKM 4.607843 5.505361 12.267741 10.961719 8.434653 5.341671 6.575172 6.165593 6.520767 8.489565