Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g00996 ATGCCTCTGCCCGACGCCAAGGGTTTCAAACAGAGAAATAGCCTGTGTGCAACAACAGTACAAAACGCAGCTCCTTCACTATTGTATTTGGAGTCTGGGAAGGAACACGAGGGATCAAGATCAGATTTGTGGCTTTTGGGGTTTTTTTCCCCAGCACTGGGTAAAATGGGTGATCTCGAAACTCGAAGAATTAGAAATATATGTATATTAGCACACGTCGATCATGGCAAAACGACACTTGCTGACCATCTTATCGCCTCGTCGGGAGGCGGTTTGATCCACCCAAAGATGGCGGGCCGCCTCCGTTTCATGGATTATCTTGATGAGGAACAAAGGCGGGCGATTACTATGAAGAGCTCATCGATTGGTCTACGGTACAAGGAATACTCTATCAATCTCATTGATTCGCCTGGCCATATGGATTTTTGTAGCGAAGTGTCGACTGCTGCTAGATTGAGTGATGGGGCATTGGTTTTAGTTGATGCTGTGGAGGGTGTGCACATTCAAACCCATGCTGTCTTGCGACAGGCTTGGATTGAGAAGCTTACGCCCTGTTTGGTTCTTAATAAGATTGATAGGTTGATATGTGAGTTGAAGTTGAGTCCTATGGAAGCATATACTCGTTTGTTGAGGATTGTTCATGAAGTTAATGGGATAATGAGTGCATACAAGTCTGAGAAATATTTGACCGATGTAGATTCAATACTTGCAGGTTCTTCAGGTGAGGTGAATGACGAGAATCTCGAGTTTATAGAGGATGACGAAGAAGATACATTTCAACCGCAGAAAGGGAATGTGGTGTTTGTGTGTGCTTTAGATGGGTGGGGTTTTGGCATTAACGAATTTGCTGAGTTTTATGCTTCAAAGCTTGGGGCCAATGTATCTGCATTGAAGAAGGCCTTGTGGGGTCCACGGTATTTTAATCCAAAGACCAAGATGATTGTTGGAAAGAAGGCCATGGCTGGAGGAAGTAAAGCACGGCCTATGTTTGTTCAATTTGTGCTTGAAAGACTTTGGGATGTTTATGAGGCTGCTTTAGAAACTGATGGGAATAAGGAGGTACTTCAAAAGGTTAATAGTACATTTAATTTGAATATACCAGCTCGAGAACTTTCTAACAAGGATCCAAAGGTGGTTCTTCAAGCTATTATGAGTCGTTGGCTTCCTCTTTCAGATACAATATTGTCAATGGTCGTAAACTGTATGCCTGACCCAATTGCTGCACAATCATTTCGAATATCAAGGTTGCTTCCGAAGAGGGATATAGTTGATACCGGAGTTGACGTCAATGTACTAACTGAAGCAGATCTTGTCAAGAAATCCATTGAAGCTTGTGATTCAAGGCCTGAAGCTCCATTTGTTGCTTTTGTGTCCAAGATGTTTGCAGTTCCACTTAAAATGCTTCCACGGAGGGAAAATCATGGTGAGACTACTAATATTTCAGCTGAAGATGGTGGAGATGGTGAATCAGACGAGTGTTTCCTTGCATTTGCAAGGGTATTTAGTGGGGTTCTTTATTCTGGACAGAGAGTGTTTGTGCTTTCAGCCTTATATGACCCAACCAAAGGGGAATCAATGCACAAACACATTCAGGAGGCTGAATTGCATTCATTTTATCTCATGATGGGCCAAGGCTTGAAACCAGTGACCTCAGTAAAAGCAGGAAACCTTGTTGCAATTCGTGGTCTTGGCCATCACATATTGAAAAGTGCAACTCTTTCATCCACTAGAAATTGCTGGCCTTTCTCAAGTATGGTGTTCCAGGTTGCACCAACACTTAGAGTTGCACTTGAGCCATCTGATCCTGGAGATATAGGTGCATTGTTGAAAGGCTTAAGGCTTTTAAATCGAGCAGACCCTTTTGTAGAGGTAACTGTTTCAGCAAGAGGAGAACATGTTCTTGCTGCAGCAGGAGAAGTTCATCTCGAGAGATGCATAAAGGATTTGAAGGATAGGTTTGCCAGGGTAAGCTTGGAAGTCTCTCCACCTCTTGTATCGTATAAAGAGACAATTGAAGGAGAGGCATCTAGTGTGTTGGATTATTTTAAGGTGTTGTCTGAAAGCACAGATTGTGTTACTAAGAAAACCCCAAATGGTAGATGTATCGTCAGAGTGCAGGTACTGAAACTTCCACCTGCTCTTGCTAAAGTACTTGATGAAAATTCTGATGTATTGGGAGATATTATTGGAGTCAAGTTGGGGCAGAACTATAAAAACTTGGAAACAAAGAGATCAAATCTGAGAGAGAATGATAATCCAACAGAAGCAGTAAAAAAACTAATAGCAGATGCAGTATGTAGTAATGTATCTTCAAAGGATGACCATGAAGGTAGTCGGGCTGACAAACACAATGCGCTGTGGTCGAAGCTTCTTAAGCGATTTTGGGCACTTGGACCACAGCAGATTGGTCCTAACATTCTGATTAACCCAGATCCGAAAGTAAAGGATCCTGATGGCTCTGTTCTTATTCGAGGCTCGCCTCATGCATCACAGAGATTGGGTTTTGTGGATGATTCCTTAAATGCTAGCTTGGATCCTGAAACATCTTTGGTAGGCGATATGATTTCTGCAGCATCTCCAGAAGGAACTCAGACATTATGCATGGAAGCAGCATCTCTTGAGAACAGCGTTTTATCTGGGTTTCAGCTTGCTACATCAGCTGGGCCCTTGTGTGATGAACCTATGTGGGGGTTGGCATTTCTTGTTGAGGCCTCTATATCTTCGCTGTCTGGGAATTCAGATGAATCTGAATCTCCCTTTCAACCAGAGAACAACGCTGTCTTTTCTGGTCAAGTTATGGCAGCTGTAAAGGATGCCTGTAGAGCAGCTGTACTTCATAAGAAACCACGGCTTGTTGAAGCCATGTACTTCTGTGAATTGAATACTCCCACTGAGTATTTGGGTCCAATGTATGCTGTACTTGCACGAAGGCGAGCCCGGGTTTTGAAAGAAGAAATGCAGGAAGGTTCACCTTTGTTTACTGTGCATGCGTATGTGCCAGTTTCAGAAAGCTTTGGTTTTGCAGATGAGTTAAGGAGATGGACTTCCGGAGCAGCAAGTGCTCTTCTAGTGCTTAGCCATTGGGAAGAACTATGTGAAGATCCTTTTTTTATTCCCAAGACGGAAGAAGAAATAGAAGAGTTTGGAGATGGTTCTAGCGTGCTTCCCAACACAGCAAGAAAGCTTATTGATACAGTAAGACGACGTAAGGGTCTTCCAGTGGAAGAAAAAGTTGTACAACATGCAACAAAGCAGAGAACTTTGGCTCGGAAAGTATAA 3279 43.0 MPLPDAKGFKQRNSLCATTVQNAAPSLLYLESGKEHEGSRSDLWLLGFFSPALGKMGDLETRRIRNICILAHVDHGKTTLADHLIASSGGGLIHPKMAGRLRFMDYLDEEQRRAITMKSSSIGLRYKEYSINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQAWIEKLTPCLVLNKIDRLICELKLSPMEAYTRLLRIVHEVNGIMSAYKSEKYLTDVDSILAGSSGEVNDENLEFIEDDEEDTFQPQKGNVVFVCALDGWGFGINEFAEFYASKLGANVSALKKALWGPRYFNPKTKMIVGKKAMAGGSKARPMFVQFVLERLWDVYEAALETDGNKEVLQKVNSTFNLNIPARELSNKDPKVVLQAIMSRWLPLSDTILSMVVNCMPDPIAAQSFRISRLLPKRDIVDTGVDVNVLTEADLVKKSIEACDSRPEAPFVAFVSKMFAVPLKMLPRRENHGETTNISAEDGGDGESDECFLAFARVFSGVLYSGQRVFVLSALYDPTKGESMHKHIQEAELHSFYLMMGQGLKPVTSVKAGNLVAIRGLGHHILKSATLSSTRNCWPFSSMVFQVAPTLRVALEPSDPGDIGALLKGLRLLNRADPFVEVTVSARGEHVLAAAGEVHLERCIKDLKDRFARVSLEVSPPLVSYKETIEGEASSVLDYFKVLSESTDCVTKKTPNGRCIVRVQVLKLPPALAKVLDENSDVLGDIIGVKLGQNYKNLETKRSNLRENDNPTEAVKKLIADAVCSNVSSKDDHEGSRADKHNALWSKLLKRFWALGPQQIGPNILINPDPKVKDPDGSVLIRGSPHASQRLGFVDDSLNASLDPETSLVGDMISAASPEGTQTLCMEAASLENSVLSGFQLATSAGPLCDEPMWGLAFLVEASISSLSGNSDESESPFQPENNAVFSGQVMAAVKDACRAAVLHKKPRLVEAMYFCELNTPTEYLGPMYAVLARRRARVLKEEMQEGSPLFTVHAYVPVSESFGFADELRRWTSGAASALLVLSHWEELCEDPFFIPKTEEEIEEFGDGSSVLPNTARKLIDTVRRRKGLPVEEKVVQHATKQRTLARKV 1092
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 10481769 10485468 - ClCG09G010670.1 Cla09g00996 280416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g00996 1092 SMART EFG_C_a 950 1039 IPR000640 -
Cla09g00996 1092 CDD eEF2_snRNP_like_C 953 1031 - -
Cla09g00996 1092 TIGRFAM small_GTP: small GTP-binding protein domain 64 193 IPR005225 GO:0005525
Cla09g00996 1092 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 62 294 IPR000795 GO:0003924|GO:0005525
Cla09g00996 1092 Gene3D - 57 265 IPR027417 -
Cla09g00996 1092 SUPERFAMILY Ribosomal protein S5 domain 2-like 665 952 IPR020568 -
Cla09g00996 1092 CDD aeEF2_snRNP_like_IV 662 957 - -
Cla09g00996 1092 Pfam Elongation factor G C-terminus 951 1034 IPR000640 -
Cla09g00996 1092 PRINTS GTP-binding elongation factor signature 112 120 IPR000795 GO:0003924|GO:0005525
Cla09g00996 1092 PRINTS GTP-binding elongation factor signature 184 193 IPR000795 GO:0003924|GO:0005525
Cla09g00996 1092 PRINTS GTP-binding elongation factor signature 66 79 IPR000795 GO:0003924|GO:0005525
Cla09g00996 1092 PRINTS GTP-binding elongation factor signature 148 159 IPR000795 GO:0003924|GO:0005525
Cla09g00996 1092 PRINTS GTP-binding elongation factor signature 132 142 IPR000795 GO:0003924|GO:0005525
Cla09g00996 1092 CDD EF2_snRNP_III 591 662 - -
Cla09g00996 1092 Gene3D Elongation Factor G (Translational Gtpase), domain 3 590 666 - -
Cla09g00996 1092 Pfam Elongation factor Tu GTP binding domain 63 402 IPR000795 GO:0003924|GO:0005525
Cla09g00996 1092 SUPERFAMILY EF-G C-terminal domain-like 953 1051 IPR035647 -
Cla09g00996 1092 CDD EF2 65 287 - -
Cla09g00996 1092 Gene3D Yeast translation eEF2 (G' domain) 279 388 - -
Cla09g00996 1092 PANTHER - 60 1091 - -
Cla09g00996 1092 Gene3D - 686 947 IPR014721 -
Cla09g00996 1092 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 60 1091 - -
Cla09g00996 1092 SUPERFAMILY Translation proteins 443 585 IPR009000 -
Cla09g00996 1092 Gene3D - 949 1084 - -
Cla09g00996 1092 SUPERFAMILY EF-G C-terminal domain-like 588 663 IPR035647 -
Cla09g00996 1092 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 61 403 IPR027417 -
Cla09g00996 1092 CDD EF2_II 452 576 - -
Cla09g00996 1092 Gene3D Translation factors 405 588 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01810 Cla-Chr2:33134579 Cla09g00996 Cla-Chr9:10481769 2.87E-130 dispersed
Cla09g00996 Cla-Chr9:10481769 Cla10g01587 Cla-Chr10:31345273 3.72E-22 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g00996 K14536 - csv:101220903 1938.7