Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g00997 ATGCCCATGTGCCATTATTGTGGTGCTGTGACAACAGACTCAGATGGCAAAAAATTGGAAAATGGTAGTTCTGTTAAATTGGATGATGCAGGCCCCGCGTGTTTATGTAAGGTTTGCAAAGAGAATCAGGGGCAAGAAATGATGAACTCGGATAATAGAAGTATGAGCGTCGCACCGATGTTAAGTCCAATGCCTTCACTGTCAAGCTGCAATAGTGATTGTTCAACAATGGCAAATTTAGATATCAGGGATGGCCAAGAAGGTGCAACAGGAAGTAGCCAAGAAAATATCGATTGTAGGCAAGAAATGATGTCACATAACTTGAGTGAAGTAGTTCATAGCAATGATCAACTCAGTGGAAGAGATGATGAAAGTGTAACGTCAATTAGTCAAGAGGCAACTCACAATGGCTCTGGCGTTCCTGTCAGTGCGGAAATTGAGCAATCCCATTCTAATTGGATGGATACTGATCTGTGGGATCCTCCAGAGCCAGAGGACCCAGAGGATCACATGGAGGGTGGGATGGGTTATAACGACGATGACGATGACGAGTTTGGTGATACCACAGAATGGAGCACCTCAAGTTCCTTTGGTCGCACTGTGGATGACGCCAGTGTTAGCTATCGGTTTAAAGAGGAAAAACAAAAGGCAATGCAACAGGTTATGAATGGGAAGTACAAGGTTTTCATACGCCATCTTCTTAAATTAGTAGGTGTTGCTGCCTCATCAGGGGAGAATAGTGAAAATTGGGTGGATATAGTTTCTTCTTTGTCTTGGGAAGCTGCCACATTTTTAAAGCCTGTAGTAAATGGTAAAGCGACGAATCCAGAAGATCATGTAAAAGTGAAGTGCATTGCAACTGGAACTCCAAACCAAAGTCAATTTATCAAGGGCATGGTATTCAAGAAGCATGCAGCTCACAAACACATGCCAACGCATTGTAAGAACCCGAAGTTAATACTGATTCAAGGCATGCTTGGTGAGGCTCCAATAAGTAGACTGTCTTCATTTAATTCAATGGATCAGGAAAATGATTTTACGAATCATGTTATAGAGATGATTGAAGGTTGCACTGCGAATGTGATTTTAGTTGAAAAAACTGCAGCACGAGTTATCCAAGAAGCAATTCTCAAGAAAGGCATGACATTAGTGCTTGATATGAAGCTCCACCGTCTGGAGAGAATAGCTCTTTGTACCGGTTCACCAATTTTAACATCTGAAACTTTAATGAGCCAAAAGACAAGACAATGTGATGCTGTTTATTTTCAAAAAATTGTAGAAGAACATGCTGGTGTTTTGGAGGGAGGAAAGATGCCAACTAAAACTTTAATGTTTATTGAGGGCTGTCCTACACGTTTGGGTTGTACGATTTTGCTGAAAGGAGCTCACAGTGATGAACTGAAGAGGGTTAAGTTTGTTGTACAGTGTGCCGTTGTTATGGCATTTCACTTAATATTAGAGACTTCTTTCCTTGTTGACCAGCGAGCTATGTTTGCAACTATTCCATTTGGTGGAGTACCAGCTATTGTTTCATCTGATCCACAAGCACCTTTAGAGCCTTGTAGCCAAAATGTACGTCAAGCTGAAAATTCAAGTGATAAAAGTGAACAACTGACTGACTCAACGAATGTTTATATTTCAAATGGATCCCATGAGGAGGCATCTAACGGATTAAACCTGGAGTCAGTGGAAAAGCTAATGTCCTCTGAACCAGAACCATATAATCCTGCCATATTTTCTGGATTCTCATCCATTTCTGATTCGTTAAAGAGAGTCATGGGAGAAAGTTTCCTTTTATCCTCTCCCTATCAATCATTGTCTTCTTATTTTGGACATGGGAGTGACCTGAGTGGCTTGGTTGCCAAGTCTGACTCAGTTTCATCTACTCCACAGGCAGCTGATCAGTTTGATGTGGAAGTTAGGGGTAGTTCTGATGAAGAGAATTCAGTTCATGAACAGTCTGTGTCACATCAATCAACCTTGGAAGGCCTTGGATTCCATGAAACTGCTCCTAACTATTCTGAAGACACAATGCAGAAGAAAACGTCATTGGATTCTCAGAGTATTTTGGTTTTGATGTCGAGCCGAAATGCTTTGAAAGGAACCATGTGTGAGCAGAGCCATTTTTCACATATTGTGTTCTACAAGAATTTTGATGTTCCTCTTGGAAAATTTTTACAAGAAAATTTACTAAATCAGAATAATCTCTGCACTGTCTGTGGTGAACTGCCGGAAGCTCACTTTTACTATTACGCACACTATCGAAAGCAGCTTTCCATTCAAGTCAAACAGCTTCCAGTGGATAAAGTTTTGCCAGGTGAAACAGAAGGAAAACTTTGGATGTGGAGTCGTTGCAGTAAATGTAAATCTAAGGGAGGACCTTCAAAGTCCACAAAAAGGGTGCTGATCTCTACAGCCGCACGTGGCTTATCATTTGGGAAGTTTCTGGAACTTTGTTTCTCTGATGACACTTTACCTAGTAAATCATCAGTTTGTGGCCATTCATTGTTTGGGGACTTCCTCTACTTCTTCGGACTGGGCAATATGGTTGCTATGTTCAGATACTCTGAGGTAGCAATTTATACGGTCTCTATGCCTCCTCAGAAACTGGAGTTCAACAGTTCAATGAGACAAGGTCATCTCATCAGAGAAACTGAAAATGTTTACACGAAGGGGATGGTACTTTTCACTGAGATTGCGCATTCTCTGAAGAAGATCATATCTGAACGTAAAAGTTCAAATGTAAACCACCCTCAGGGCTTTCTCAATGACTTTTCTTTGGTTGAAGAAATGTTAAACGAAGAAAGATCAGAATTTGAGGTAAATATTCAAAATTCTCTTTCTAAGAAAGGAAACCTGGACTTCGCTTTTCACAAATATCTCAATCTGAATCGTTTGCTCTGGGACCTGCTGCTAGAATCATGTATTTGGGATAGACGCCTGCAATCGTTAATGTCATTGGGTGTTACAACAAACTCTGGCACCTCTGAAAATGTTGAGCCAGAATCAGTTATGTTGAAGATGAATAGCAACATTGATGTTGGACCTGAGGGATCGGAATCAATTGTAGAAAATGATGATACAAAAGTTCAGCAAGATATGTCCGTGGATGAAGATGTATTACCTCTGAAAGAAATTGCAGTTGAAGGTTCGGATGGAGAGTCCGGTGGTGATGGACTTAATTTACCTTTGGCGAATGAAGTCACGGAGATACCGATTATGGATGATTTGAGCCCCAAGAAACTTTCTCGCCAAGGGTCTTTGTCAAATGGCTTTGACCGTCACCATTCAGATTATGAGGATCCTCAAGTAGGAAGTGTTCTGTCATCTGGTGATTTGCATGTAGATAGGACCATTCCAATTTCAACAGGTGATTCGACCCTCAGCAAATTGTTCTGGACCCCTTTTTCGGAGATCCGGCAGATGAACATGAGGGACATCCAGAGAAGCTACTTTCCCGAACTCAAGTCCATCAGTAGCTATACTCCAAAACTCTTGCCCGCAGCCTCTGACTTCATCCACGAAGAAGGACAGAAGCTACACATTCGTCTTGCAAATGATAATTTTATTGTTTCAGACTATGAGGGTGAACTTTCGAGCATAGTTGCTTGTGTACTTGCTCTGTTGAAAGATCTACCCTGTCAATCAGATTCTCATAATGAGGATAGTAAGGGAGAGGGTGAAGGTGTTTTACAAGCAGCTTTGAGTTCACGAAGCCTAAATAAAGTTCCCTCCAATGGATCCTCAGATTCAGACTCGAGCATCTCTTCAGAAGAATATCGGTTCTCAAGTTTTGACAGGTTAAATTTGTTGGATTCTCTTGTTCCAGAGACTTTCAAGCGAGCAGATCATGAAGGGGTCATAAAGTCACTAGCAAAGGGAAAATATCTTGTGAATTGTCCATATTTCAATCAGTTCCGTGATCTTCGAAGTCGATGCTGCCCATCAGAGCTCCATTACATAGCTTCCTTAAGCCGTTGTATAAACTGGAACGCAAAAGGTGGGAAAAGCAAATCTTTTTTCGCCAAGACACTTGATGACAGGTTCATTATAAAAGAAATTAAAAGGACGGAATATGATTCATTTATGAAGTTCGCTCCTGAGTATTTCAAGTACATTAACGAATCATTTGACATGGGGAACCAGACCTGCCTTGCTAAAGTACTTGGAATCTATCAGGTAACGGTGAGGGAGTCGAAGAATGGGAAAGAGATGAGACATGATTTGATGGTTATGGAGAATCTCAGTTTTGGTCGCAACATTATTCGCCAATATGATCTTAAAGGAGCTCTACATGCTCGATTCAATCCAGCTACCAACAATTTTGGTGAAGTCCTCTTAGATCAGAACTTTGTGAATGACATGAACTCATCTCCCCTCTATGTGAGTAATCGAGCAAAGCGTCGGTTGCAACGGGCAATTTGGAATGATACCGCTTTCCTCAATTCGATAAATGTTATGGATTATTCTCTGCTTGTCGGGGTCGATGCCGAGAAGAAGGAACTTGTATGTGGGATAATTGATTACCTTAGACAATACACCTGGGACAAGCAACTAGAGACATGGGTGAAATCGTCCCTCATACCGAAAAATGTACTTCCCACTGTCGTCTCTCCGAAAGAGTACAAGAGGAGATTCAGAAAGTTCATGTCTGCACATTTCTTGAGTGTCCCAGATCATTGGTGCCTGCAGCAGAATCTCCCTGGGCCTTGGGAGCTCTGTGGCACCTCAGATCGTGCTTCTTCTCAGAAAGCGAATGGCGAAGACAATGATCTCTCTTCATAA 4785 41.53 MPMCHYCGAVTTDSDGKKLENGSSVKLDDAGPACLCKVCKENQGQEMMNSDNRSMSVAPMLSPMPSLSSCNSDCSTMANLDIRDGQEGATGSSQENIDCRQEMMSHNLSEVVHSNDQLSGRDDESVTSISQEATHNGSGVPVSAEIEQSHSNWMDTDLWDPPEPEDPEDHMEGGMGYNDDDDDEFGDTTEWSTSSSFGRTVDDASVSYRFKEEKQKAMQQVMNGKYKVFIRHLLKLVGVAASSGENSENWVDIVSSLSWEAATFLKPVVNGKATNPEDHVKVKCIATGTPNQSQFIKGMVFKKHAAHKHMPTHCKNPKLILIQGMLGEAPISRLSSFNSMDQENDFTNHVIEMIEGCTANVILVEKTAARVIQEAILKKGMTLVLDMKLHRLERIALCTGSPILTSETLMSQKTRQCDAVYFQKIVEEHAGVLEGGKMPTKTLMFIEGCPTRLGCTILLKGAHSDELKRVKFVVQCAVVMAFHLILETSFLVDQRAMFATIPFGGVPAIVSSDPQAPLEPCSQNVRQAENSSDKSEQLTDSTNVYISNGSHEEASNGLNLESVEKLMSSEPEPYNPAIFSGFSSISDSLKRVMGESFLLSSPYQSLSSYFGHGSDLSGLVAKSDSVSSTPQAADQFDVEVRGSSDEENSVHEQSVSHQSTLEGLGFHETAPNYSEDTMQKKTSLDSQSILVLMSSRNALKGTMCEQSHFSHIVFYKNFDVPLGKFLQENLLNQNNLCTVCGELPEAHFYYYAHYRKQLSIQVKQLPVDKVLPGETEGKLWMWSRCSKCKSKGGPSKSTKRVLISTAARGLSFGKFLELCFSDDTLPSKSSVCGHSLFGDFLYFFGLGNMVAMFRYSEVAIYTVSMPPQKLEFNSSMRQGHLIRETENVYTKGMVLFTEIAHSLKKIISERKSSNVNHPQGFLNDFSLVEEMLNEERSEFEVNIQNSLSKKGNLDFAFHKYLNLNRLLWDLLLESCIWDRRLQSLMSLGVTTNSGTSENVEPESVMLKMNSNIDVGPEGSESIVENDDTKVQQDMSVDEDVLPLKEIAVEGSDGESGGDGLNLPLANEVTEIPIMDDLSPKKLSRQGSLSNGFDRHHSDYEDPQVGSVLSSGDLHVDRTIPISTGDSTLSKLFWTPFSEIRQMNMRDIQRSYFPELKSISSYTPKLLPAASDFIHEEGQKLHIRLANDNFIVSDYEGELSSIVACVLALLKDLPCQSDSHNEDSKGEGEGVLQAALSSRSLNKVPSNGSSDSDSSISSEEYRFSSFDRLNLLDSLVPETFKRADHEGVIKSLAKGKYLVNCPYFNQFRDLRSRCCPSELHYIASLSRCINWNAKGGKSKSFFAKTLDDRFIIKEIKRTEYDSFMKFAPEYFKYINESFDMGNQTCLAKVLGIYQVTVRESKNGKEMRHDLMVMENLSFGRNIIRQYDLKGALHARFNPATNNFGEVLLDQNFVNDMNSSPLYVSNRAKRRLQRAIWNDTAFLNSINVMDYSLLVGVDAEKKELVCGIIDYLRQYTWDKQLETWVKSSLIPKNVLPTVVSPKEYKRRFRKFMSAHFLSVPDHWCLQQNLPGPWELCGTSDRASSQKANGEDNDLSS 1594
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 10485940 10499301 - ClCG09G010680.2 Cla09g00997 280417

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g00997 1594 SMART PIPK_2 1275 1555 IPR002498 GO:0016307|GO:0046488
Cla09g00997 1594 CDD PIPKc_PIKfyve 1302 1554 IPR044769 GO:0000285
Cla09g00997 1594 SUPERFAMILY GroEL apical domain-like 292 461 IPR027409 -
Cla09g00997 1594 PANTHER 1-PHOSPHATIDYLINOSITOL 3-PHOSPHATE 5-KINASE-RELATED 148 1583 - -
Cla09g00997 1594 MobiDBLite consensus disorder prediction 160 181 - -
Cla09g00997 1594 ProSiteProfiles Phosphatidylinositol phosphate kinase (PIPK) domain profile. 1236 1554 IPR002498 GO:0016307|GO:0046488
Cla09g00997 1594 SUPERFAMILY SAICAR synthase-like 1286 1554 - -
Cla09g00997 1594 Pfam TCP-1/cpn60 chaperonin family 231 488 IPR002423 GO:0005524
Cla09g00997 1594 MobiDBLite consensus disorder prediction 642 661 - -
Cla09g00997 1594 PANTHER 1-PHOSPHATIDYLINOSITOL-3-PHOSPHATE 5-KINASE FAB1D-RELATED 148 1583 - -
Cla09g00997 1594 Pfam Phosphatidylinositol-4-phosphate 5-Kinase 1332 1499 IPR002498 GO:0016307|GO:0046488
Cla09g00997 1594 Gene3D - 1416 1555 - -
Cla09g00997 1594 MobiDBLite consensus disorder prediction 112 142 - -
Cla09g00997 1594 Gene3D Phosphatidylinositol Phosphate Kinase II Beta 1239 1414 IPR027484 -
Cla09g00997 1594 Gene3D GroEL 291 461 IPR027409 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g00997 K00921 PIKFYVE, FAB1; 1-phosphatidylinositol-3-phosphate 5-kinase [EC:2.7.1.150] - csv:101202759 2686.75
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g01079 Cla-Chr3:21331275 Cla09g00997 Cla-Chr9:10485940 0 dispersed
Cla07g00600 Cla-Chr7:10838399 Cla09g00997 Cla-Chr9:10485940 3.91E-102 dispersed
Cla09g00997 Cla-Chr9:10485940 Cla10g01887 Cla-Chr10:34779861 2.51E-11 dispersed
Cla09g00997 Cla-Chr9:10485940 Cla09g00128 Cla-Chr9:1284072 8.79E-61 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1304 Blo01g01752 . . Bda03g00414 Bpe02g00190 Bpe04g00380 Bma04g00391 Bma01g02535 . . . Cma09g01172 . . . Cpe06g00918 . . . . . . . . . . . . . . . . . . Cone20ag0680 . . . . . . Bda11g00850 . . . . . . . Cmo09g01170 . . . Car09g01046 . . Bhi09g01620 . . . . . . Cla09g00997 Cam09g1055 Cec09g1057 Cco09g1071 . . Cre09g1019 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004019 2 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 0 0 7 3 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla09g00997 Cla_Chr09 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0