Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g01010 ATGGTTGAATTAGACTACCAGATCCCATCCGCATTTGATCCATTCGCCGAAGCCAAGGATTCGGATGCCCCCGGAACCAAAGAGTATGTTCATATTCGCGTCCAACAAAGGAATGGGAAGAAGTGCTTGACTACAGTCCAAGGTCTGAAGAAAGAGTTTAGCTACGAGAAGATTCTCAAAGACGTGAAGAAGGAATTCTGCTGTAATGGTAACGTTGTGCAAGACAAAGAATTGGGGAAGATAATTCAACTTCAAGGCGATCAGCGTAAGAACGTCTCTCAGTTTCTTGTTCATGCTGGTCTGGTCAAGAAGGATCAGATCAAGATTCATGGGTTTTGA 339 43.95 MVELDYQIPSAFDPFAEAKDSDAPGTKEYVHIRVQQRNGKKCLTTVQGLKKEFSYEKILKDVKKEFCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVHAGLVKKDQIKIHGF 112
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 10620803 10621141 - ClCG09G010810.1 Cla09g01010 280430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g01010 112 CDD eIF1_SUI1 28 111 IPR005874 GO:0003743
Cla09g01010 112 TIGRFAM SUI1_MOF2: translation initiation factor SUI1 7 112 IPR005874 GO:0003743
Cla09g01010 112 ProSiteProfiles Translation initiation factor SUI1 family profile. 30 100 IPR001950 GO:0003743|GO:0006413
Cla09g01010 112 PIRSF Transl_init_SUI1_Euk 1 112 IPR005874 GO:0003743
Cla09g01010 112 Gene3D - 2 112 - -
Cla09g01010 112 PANTHER PROTEIN TRANSLATION FACTOR SUI1 HOMOLOG 1 112 - -
Cla09g01010 112 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 1 112 - -
Cla09g01010 112 Pfam Translation initiation factor SUI1 27 100 IPR001950 GO:0003743|GO:0006413
Cla09g01010 112 SUPERFAMILY eIF1-like 4 112 IPR036877 GO:0003743|GO:0006413
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00178 Cla-Chr2:1817252 Cla09g01010 Cla-Chr9:10620803 1.06E-54 dispersed
Cla09g01010 Cla-Chr9:10620803 Cla10g00503 Cla-Chr10:6673912 2.30E-74 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g01010 K03113 - csv:101202908 224.172