Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g01012 ATGGATACGGTCGAAGAAGCGAAGTTTGTTGCGAAGAGTTTTGTAAAGCTTGATTTGAATCAGAATTTCAATTCCAAGCCTTCTTATTCCAATCCCTTCGCTAAATCGACGTCTCTCGATTTGAATCAGAAATCCAGTTTCAAGCCTACTACTTCTCAATCCTCCGGAAAAAAATATGATGTTTCCAGCCCTAATTCGGCGACTCAATTTGCTAATTCTCTGGCATTTGCGTGTTGTACCCACGAGTTCTTTTTCTGCAATTATGTGATTCGAGTTCTTGTTTTGGTTATAGGAACAGGATTGCCCTTTGAGAGGAAGAAACCTCCCAGTTTAGTCAGTTTGTGCGTTGGAGTTATTGGCAAGAATTTGGAAGATATAATTCCTGACTTGGATGAGATTAGTGCCAACTTTCCGTCAGATGTGAAGCAATCATTAGCAGCAGTTGCCCGAAGAAGAAAATTACTGAACAATGATGTTATTATCTCCCTAGCAGATAGTTCGTGGGAAACCCTTGACGTTTCTGGTTCAGAAGTTTCTGATTTTGGATTAGCAGAAGTTGCCAAGACATGCAAATTTCTTAGAGCTGTGGATATTAGTCGATGCAACAAGATCACACCTGCTGGTGTTTCCGAGCTCGTTCAGCATTGTTGTTCCTTGGAGACGCTGCGTTGCGGAGGGTGTCCAAGGAGTGATGACACGGCACGAAGGTGCTTGGATATATTTAAACCAAGGCTGGATGATATAGAAGGAGATTCATGGGAAGAGCTTGATACAGCTGAAATTGCCAATGGGGCACAATCACTTCGGTGGTTGGTCTGGCCAAAAATAGATAAAGATTCCTTGGAGATCTTCTCCACAGAATGCCCACGCATTACAATAAACCCAAAACCATCGCCGTTTGGTTTCAGGGGGAAGCGAGTTCCAGGGGAAGCGTTGCCAAACATTGCATTAGATGAATACACCATAGCTGATATCAATCCTGAAACATGGGCAGTGGGCAGATCCACAGCAAGGGCTCCAGTTTCTACATCAAGTCCATCAGAATTGTCTTTGGCTGAGAAATTCAGACTTGCATTTGTGGAAAGGGACACTCGGTTAGCTCCGAAACGAGCTAAAAATGCGAGACAACATCAAAGACGTGCGGAGAGGGAGTGGATGACGTCGAGTACAAGAGCCAAGGCTCTGGCCTTGGCCTCTCAAGCAAGTAAAACTTTGCAGAGTCGCACATAG 1230 44.23 MDTVEEAKFVAKSFVKLDLNQNFNSKPSYSNPFAKSTSLDLNQKSSFKPTTSQSSGKKYDVSSPNSATQFANSLAFACCTHEFFFCNYVIRVLVLVIGTGLPFERKKPPSLVSLCVGVIGKNLEDIIPDLDEISANFPSDVKQSLAAVARRRKLLNNDVIISLADSSWETLDVSGSEVSDFGLAEVAKTCKFLRAVDISRCNKITPAGVSELVQHCCSLETLRCGGCPRSDDTARRCLDIFKPRLDDIEGDSWEELDTAEIANGAQSLRWLVWPKIDKDSLEIFSTECPRITINPKPSPFGFRGKRVPGEALPNIALDEYTIADINPETWAVGRSTARAPVSTSSPSELSLAEKFRLAFVERDTRLAPKRAKNARQHQRRAEREWMTSSTRAKALALASQASKTLQSRT 409
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 10631110 10634806 + ClCG09G010830.2 Cla09g01012 280432

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g01012 409 PANTHER OS06G0679700 PROTEIN 73 408 - -
Cla09g01012 409 SMART LRR_CC_2 165 189 IPR006553 -
Cla09g01012 409 SMART LRR_CC_2 190 215 IPR006553 -
Cla09g01012 409 MobiDBLite consensus disorder prediction 368 390 - -
Cla09g01012 409 SUPERFAMILY RNI-like 166 236 - -
Cla09g01012 409 PANTHER UNCHARACTERIZED 73 408 - -
Cla09g01012 409 Gene3D Ribonuclease Inhibitor 142 266 IPR032675 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g01012 - - - csv:101203553 577.785
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla09g01012 Cla-Chr9:10631110 Cla06g00531 Cla-Chr6:6398541 8.63E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g517 . Blo03g01453 . . . Bpe08g01120 . . . . Cma01g01127 . . . Sed04g3213 . Cpe02g00775 Bhi09g01650 Tan01g4558 Cmetu01g1354 . Hepe01g1269 Mch11g1193 . . . . . . . . . . . . Lsi02g01901 Csa07g01096 . . . . . . . . Bma07g01293 . . Cmo01g01178 . . . . . . . . . . . . . . Cla09g01012 Cam09g1069 Cec09g1069 Cco09g1087 . . Cre09g1033 . . . Cme01g01030
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012078 0 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla09g01012 Cla_Chr09 FPKM 141.172775 143.7612 0.283588 0.249727 0.303303 0.11867 0.429742 0.618302 0.2238 0.0