Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g01015 ATGACGAGCAAAAGCAACACGGAAGCTAAGACGGGCAGGGAGTGGGGGGCAACGGGCAGCACCATACGCCGTCTTGGAAGAGCACCGTTTTTACGCACAAGGGTTAAAAACAGAGGAAGAAATGGGAAAATTGATTCCGAAGCAATGACAAAGGTTCGGAAACCGAAGCTGAGGTTGGGCTTAGGCTCGGACCTCACAGATGCCTCACGAAAAAGCCAAACCAGCATCGAAAATAATGTACCAAAGCAAAAGATGAGAGAGAGAGGGAAAGGGATGGGTCAGATCGTGAAGAGGAAGAAGAAAGGCAGACCATCGAAGGCAGATCTGGCACGGCGGTCCGGTGGAGGACTGACATCGTCGGAATCTGAACCGCGGCGGAGTCTCCGTCGCCGGAATGTGAGGTACAACATCGATTACGACGACTTTCTTGAAGAAGACGATGAGGATGAGGAAGAAGACGAGAGGAGGAGAGAGAAGAAGCTTAAGCTTGTTGTGAAGCTCAACCAGGGAAGAGATGGAACGCATCTATCTCCAGTGGACGGACTTTCTAGGTCAGAGGCGCGTGATGCACACGCGCCTGAGTATGGCTCGTCGGCGTCGGAAGGGGAGGAAGACGAACCAGAGAGGAAGCCATTGAAGAAGAGGAGGATTGGCGGTGGTGGTGAAGAAGAGGATGAAGATGATGACTACGACGATCAAATTCGTGGAGATGAAAATGAAGACGATGACATTGATGAGGAAAGGGGAAGGAAGGTGGGCTCAAAAGGGTCCGACTCTGTTCCAGGGACTCCCTCAGATCGATCATCCGGGCTACCGTTACCTGATAAGAAGGCATTGGAGTTGATTCTTGACAAACTTCAGAAGAAGGATACTTATGGTGTCTATGCTGAACCAGTTGATCCTGAAGAGCTTCCTGACTATCACGATGTCATTGATCATCCTATGGACTTTGCTACCGTGAGGAATAAGTTGGCCAACGGATCATATTCAACCTTGGAACAGTTTGAGAGTGATGTTTTCCTGATATGCTCAAATGCAATGCAATACAATTCACCAGAAACCATTTACCACAAACAGGCACGTTCCATTCAAGAGCTAGCTAAGAAGAAATTCGAGAGGGTAAGAAATGAAGTTGAACGCTCTGAGAAAGAGTTGAAGTTGGAGCAGAGTACGAAACCCAATTCTTACATCAAGAAGCAACCACCAAAGAAACCCTTCTTCAGGACTTTGCAGGAACCCATTGGATCTGATTTTTCCTCAGGTGCAACCCTTGCTGCCACGGGAGATGTACAGAACAGTTCCAATCCAATCCAAGGTGTCAACTACGAGGTACCTAGCAATATTGACGGGCAAGTAGAGGGTAGTTCCTCCGTTTTTGATACTACTAATCAGGACAAGGCTGAAGAGCTCTTCTCAGGAAAGGGTCTTCTAGGTAAATTGGGGAGAAAGACATCTGCGCTTGATGACAACCGGCGTGCAACTTACAACATTTCTAATTCACCAGCACCAAGATCAGAGTCAATATTTTCAACCTTCGAGGACGAAATAAGACAACTTGTTGCGGTGGGGCTTCATGCAGAGTATTCCTATGCTAGGAGTCTGGCTCGATTTGCTGCAACACTCGGTCCTATCGCTTGGAAAGTTGCCTCCCAGAGGATTGAGCAGGCTGTACCTGTTGGATGTAAATTCGGCCGTGGTTGGGTTGGAGAATATGAGCCACTTCCAACTCCTGTATTAATGTTTGAGAACCACAACCAGAAGGAGCCTGGTTTCAGTGGTAACTTGCATTCTACCAGCGAATTAAGAAAGGATGGAAAGCCTTCAGATACTCCTTTGCCTAAGAAGGAGCATTCTCTTAGTGCACCAAGTACAGAAGTGAATGGTCTTGCTAGAGGATCCACCTTAGATGGGAAATCATCTTTCTTTAGGTCCTCTACCCCAAATCCCGGTCCTTCTCCTCAGCAAAACCTGCAGACCAAGAATTTTACTGAGGTAGAGAAGGTTAAAAAGCAAGTTGAGTTAAATTCCTTGCCCTCACCAAGACAAAATAAAGTTGATCTTGGTGTGGAGAAGCAAGCCAATTCAAATGTGACCACTTCTAGGTCTAGAGATATGACATCGGTAAACTTAAATCTTGTTCAATCTGTGCCTTATAAACCGCCTGGTGTTAATGGCGTTGTAACTGGAGGATTGCCTAATGGAAAATTCTCTAACAATTGTTTGAATAGTCCACGGGCTGCTTTATCATCTTCTAGCTTGCCTTCTCAAACAGCCCCAGTGGCAACTTCTCATGGACAGGACCTGGGTCTGAGTAAGCCAGTTCAATTGATGAGAATGATGTCTGAAAGAGCCCCAAAACAAGAGAACTCATCCAATCAATCTTTGTCTGATTCTCCGCCAGCTTTGTCATCAGTTCCTTCTGCAATGAGAGACAATTCTAATAATGCCGCTGCAGTTGCTTCTCGTGCATGGATGTCCGTTGGGGCTGGAGGGTTTAAACAAGTCAGGGATAATTCCACACCTAAAAGTCAAATCTCTGCCGATTCATTATATAATCCAGCTCGGGAATTTCATCCGCAAATGGCACGAGCATGGGGGGAGTTTCGTGCGGTAGGCAATCAGCTCCAATCTGAGAAGAGCAATTTCCCTATGCAGGCATTTGTTTCACAAGCCACTCTTGTACCAAATGAACAACAGCTGCAAAACCGGTCCATGATATACCCTCAGCTAGTCCAGGCTGACATGTCTAAGTTCCAGTTGCAGTCGACTTGGCGAGCTCTCAGCCCACATAACCAGCCAAGGAAGAAACAGGAAATGCTTCCTCCCGACTTGAATATCGGTTTTCAGTCCCCTGGGTCTCCCGTGAAACAATCCTCTAGTGTTTTGGTTGACTCCCAGCAGCCAGACCTAGCCTTGCAACTTTAA 2925 46.94 MTSKSNTEAKTGREWGATGSTIRRLGRAPFLRTRVKNRGRNGKIDSEAMTKVRKPKLRLGLGSDLTDASRKSQTSIENNVPKQKMRERGKGMGQIVKRKKKGRPSKADLARRSGGGLTSSESEPRRSLRRRNVRYNIDYDDFLEEDDEDEEEDERRREKKLKLVVKLNQGRDGTHLSPVDGLSRSEARDAHAPEYGSSASEGEEDEPERKPLKKRRIGGGGEEEDEDDDYDDQIRGDENEDDDIDEERGRKVGSKGSDSVPGTPSDRSSGLPLPDKKALELILDKLQKKDTYGVYAEPVDPEELPDYHDVIDHPMDFATVRNKLANGSYSTLEQFESDVFLICSNAMQYNSPETIYHKQARSIQELAKKKFERVRNEVERSEKELKLEQSTKPNSYIKKQPPKKPFFRTLQEPIGSDFSSGATLAATGDVQNSSNPIQGVNYEVPSNIDGQVEGSSSVFDTTNQDKAEELFSGKGLLGKLGRKTSALDDNRRATYNISNSPAPRSESIFSTFEDEIRQLVAVGLHAEYSYARSLARFAATLGPIAWKVASQRIEQAVPVGCKFGRGWVGEYEPLPTPVLMFENHNQKEPGFSGNLHSTSELRKDGKPSDTPLPKKEHSLSAPSTEVNGLARGSTLDGKSSFFRSSTPNPGPSPQQNLQTKNFTEVEKVKKQVELNSLPSPRQNKVDLGVEKQANSNVTTSRSRDMTSVNLNLVQSVPYKPPGVNGVVTGGLPNGKFSNNCLNSPRAALSSSSLPSQTAPVATSHGQDLGLSKPVQLMRMMSERAPKQENSSNQSLSDSPPALSSVPSAMRDNSNNAAAVASRAWMSVGAGGFKQVRDNSTPKSQISADSLYNPAREFHPQMARAWGEFRAVGNQLQSEKSNFPMQAFVSQATLVPNEQQLQNRSMIYPQLVQADMSKFQLQSTWRALSPHNQPRKKQEMLPPDLNIGFQSPGSPVKQSSSVLVDSQQPDLALQL 974
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 10672357 10678699 - ClCG09G010860.2 Cla09g01015 280435

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g01015 974 MobiDBLite consensus disorder prediction 950 974 - -
Cla09g01015 974 ProSiteProfiles Bromodomain profile. 287 357 IPR001487 GO:0005515
Cla09g01015 974 MobiDBLite consensus disorder prediction 620 659 - -
Cla09g01015 974 MobiDBLite consensus disorder prediction 38 60 - -
Cla09g01015 974 MobiDBLite consensus disorder prediction 202 221 - -
Cla09g01015 974 MobiDBLite consensus disorder prediction 746 769 - -
Cla09g01015 974 ProSitePatterns Bromodomain signature. 293 349 IPR018359 -
Cla09g01015 974 MobiDBLite consensus disorder prediction 746 764 - -
Cla09g01015 974 MobiDBLite consensus disorder prediction 1 274 - -
Cla09g01015 974 SMART bromo_6 268 376 IPR001487 GO:0005515
Cla09g01015 974 PANTHER DNA-BINDING BROMODOMAIN-CONTAINING PROTEIN 92 974 - -
Cla09g01015 974 MobiDBLite consensus disorder prediction 928 974 - -
Cla09g01015 974 MobiDBLite consensus disorder prediction 583 659 - -
Cla09g01015 974 MobiDBLite consensus disorder prediction 222 244 - -
Cla09g01015 974 CDD Bromodomain 275 371 - -
Cla09g01015 974 MobiDBLite consensus disorder prediction 66 80 - -
Cla09g01015 974 MobiDBLite consensus disorder prediction 784 814 - -
Cla09g01015 974 PANTHER BROMODOMAIN CONTAINING PROTEIN 92 974 - -
Cla09g01015 974 SUPERFAMILY Bromodomain 257 379 IPR036427 GO:0005515
Cla09g01015 974 MobiDBLite consensus disorder prediction 783 814 - -
Cla09g01015 974 Gene3D - 274 394 IPR036427 GO:0005515
Cla09g01015 974 MobiDBLite consensus disorder prediction 123 139 - -
Cla09g01015 974 Coils Coil 364 391 - -
Cla09g01015 974 Pfam Bromodomain 281 361 IPR001487 GO:0005515
Cla09g01015 974 PRINTS Bromodomain signature 320 338 IPR001487 GO:0005515
Cla09g01015 974 PRINTS Bromodomain signature 304 320 IPR001487 GO:0005515
Cla09g01015 974 PRINTS Bromodomain signature 338 357 IPR001487 GO:0005515
Cla09g01015 974 MobiDBLite consensus disorder prediction 599 613 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g01015 K22184 BRD9; bromodomain-containing protein 9 - csv:101204699 1531.54
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla09g00793 Cla-Chr9:8065069 Cla09g01015 Cla-Chr9:10672357 4.45E-09 dispersed
Cla09g01015 Cla-Chr9:10672357 Cla02g00347 Cla-Chr2:3401811 1.95E-86 dispersed
Cla10g00935 Cla-Chr10:22129447 Cla09g01015 Cla-Chr9:10672357 1.41E-08 dispersed
Cla09g01015 Cla-Chr9:10672357 Cla05g01390 Cla-Chr5:18724833 1.01E-12 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g527 . . . . Bpe09g00169 . . . . . Cma01g01124 . Car01g00998 Car09g00874 Sed04g3216 Cpe06g00774 Cpe02g00777 Bhi09g01656 Tan01g4563 Cmetu01g2650 . Hepe01g1265 Mch11g1197 . . . . . . . . . . Cone14ag1152 Cone15ag1169 Lsi02g01898 Csa07g01101 . . Blo07g00901 . Bda05g00716 Bda12g00914 . Bpe03g00789 . . . Cmo01g01175 Cmo09g00956 . . . . . . . . . . . . . Cla09g01015 Cam09g1072 Cec09g1072 Cco09g1090 . . Cre09g1036 . . . Cme01g01024
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005656 2 1 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla09g01015 Cla_Chr09 FPKM 2.593923 3.273722 0.749106 1.057626 9.249086 8.267431 8.873056 1.03216 0.894828 0.957278