Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g01016 ATGTGTAACAAGCTGAACCAAATCAGAACCGGTTGGTTTGGTCGGGTTGACAAGCAAGACGTGGACCAAAGTGGACCCGGACCCGGTTGGTGCTTGGTCCTTCACTTGGTTCGCGTGGTCTCACGGCCATCAAACCAAAATTCCCTTTTCCCTCTCTTTCATTTGCTTCTTCGTCTTCATCCATCCATGGAGAGCCTGAAGAAGTCAGTGATCAAAATCGCCTATACCAGAGACCACGCTAACCTCTCTTCTCTGCAACGCTCTTTCATCCCCTTCCTCTACATGGCGTCTTCTCTCTACAAGCTCGGTCTGTCCCTTCGTCACCATTTCTACCTCTACGGCATATTTCGCAAGCATCGGTTGCCAGTGCCAGTTATTAGTGTTGGGAATTTGACTTGGGGAGGCAATGGGAAAACACCAATGGTCGAGTTCATTGCCTCATGGCTTGCGGGCTCTGGGATTTCACCTCTAATTCTTAATAGGGGCTATGCTGGTGGAGACGAAGCAAGAATGCTTAGGAGGCATCTTTCTGGGAGTTCCATTAAAGTAGGTATTGGAGCAGATAGGAGAGCTACTGCTGCTTGGTATTTTAACAAATATGGTTATGTTGAATCTCAAAGTAGCACGTTGACTGAGAAGCATTGCTTAGAACAAGTGGGAAATCTTCCTAAGTCTGAAAAAATTGGTGCTGTTATCCTTGATGATGGAATGCAGCATTGGAGTTTGCACCATGACTTGGAGGTTGTTATGTTCAATGGGATAACATTGTTGGGAAATGGGCAATTATTACCACTTGGACCTTTAAGAGAACCATTAGCTGCACTCAAGAGGGCAGACGTTGCCATTATTCATCACGCTAATCTGGTTTCAGCACAAAATATTGAAGATATTGTGATAATGTTGCGGAAAATTAAGGATTCACTTACCGTGGTGTTTACTGAAATGTGTCCCTCATTCTTCTTTGAAGTGACAAATATAAACACCATAATATCCTTGGGAACATTTTCTAAGAGTGTAGTATTATGCGTCTCTGCCATTGGCTCTGCTGATGCTTTTGTGCAGACAATGCAAAAGATAGGAGCATATCATGTTGATCGACTCGACTTCAGTGACCATCACGTCTTTCAAGACAGGGATATTGCACTGATCAAAATAAAGCTTGAGGAATTGGAGAAGAGATTTGCTTCCAAGCCAGTCATTGTTGTTACGGAAAAGGATTATGATCGGGATCCTATGACATTCAAGGGCTTGCATCCATACCGTGTTTTCGCTCTCCGTTCTCAACTGCAAATCATTCGCACCAAAGGTTGCAGTGAGAATAGCTTCAAGACGCTGTTGGAGTCGGTGGTACGAGTAAAACTCTCTTCTGTAATGAGCAGCCGTTCAGCGTTCACCCTTCGCGTCTTCTTTCAAACTTCCCGTCGTTCAATCACTCCCCTACACGCCTCAGTCGCTCTCGTTTTCGCCGGTGCCGGCATCCCTCTTCGAGTCTCCGCCGTGCTTTTCAAAGCTAAACGAACATCCCTCTCGTGTTACATTCGTTGCTTTTGGGATGCCCTCAATATCAACCACATCTTCTCTGTTTCGATTACCGGGATAGAAACAATGAAGTTGAAGCTCGACAGCAAGAGCAAGAGCTTGCCGCAGGCGAGCAAGCTAAAGAAAAAGCATGGTGAAAAGAAAAGCCACGTCAATGAAAGCAGCAAGAGCCAAGCGGAAAACCAGAACAGTACCGAACTACATTTAGAACAAGAAGCTTTAACCTTAGATGAGGCTCCATTACAACAACTTTTGGATTCTGCTCCACCCTTGGATTATAGCGAGGATCATGTCAGCGCGGGCGACAACCATGGTAATTTCGAGAATGATCAGGACCAAGAAAACGAGAATGACAACCCCGTACCTGATCAAGTAGATGAGGAAAGCGATTCATCTGAGGATGAGGTAGCTCCTAGGAACACTATTGGAGATGTTCCCTTGGAATGTGCTGATGACTCAAAAAGTTGGCGCAAGGTATATGACGAATATAATGATGAGACTTTGATCCATATCCGTCTTATGTTGATTGGTTTAAGTGGGATGATGCTAAGCACCCACTGTAAAATGCACCTGAACCAAAGAGGCGTTTTGTTCGGTCAAAATGGGAAGCCAAGAAGGTGGTTCAATTACTCCACAGAGAAGACCACACATTTGTCTTACATTCCTGCACCAAAACCAAAGTTGCCAGGTCATGATGAATCATATAATCCTTCATTGGAATATATCTCTACTCAAGAAGAAATAAACTCATATCAGTTAATGTATGAAGAAGATCGACCAAAGTTTATTCCTAGGAGGTTTACATCCATGAGAAGTGTACCTGCCTATGACAATGCTCTTAAGGATGCATTTGAACGTTGTTTGGATCTGTACTTGTGCCCTCGTGTCCGGAAGAAATGTATTAATATTGATCCTGAATCCTTGAAGCCTAAGCTGCCAAACCGGAAAGATCTTAGACCTTATCCGACTACATGCTATCTTGAATATAGAGGTCATAAGGATGCTGTAATGTCCATTTCAACTGAAGCCAACGGCCAATGGATTGCTTCAAGTTCATTGGATGGAACTGTTCGGATATGGGAAGTTGAATCAGGTAGATGTCTCAAAGTATGGGAGCTTGGGGAAGCTGTGAAGGGTGTTGATGTATTGCTTTTAAACACTGGTTTTGGGGACGGGGAGGTTCAAGCAAAAATTAAGGAACTTCTCCATGTTGACACACTTCCTGGAACAGAAAATTCTGATAAAACGCCAGTTGCAACCTGGCTTCAAGATGACAAGATCGAGGGGATTAGATTGAGGCATTTTAAGACTGTAACTGCAGTTGAGTGGCATCGTAAAGGAGATTACCTTTCAACACTCTCTAGAAAGCTAACACAAAAAATTCCGTTCAAGTTGCACGGGCTTCCTGTTTCATCAGTTTTTCATCCCACTCAATCCATCCTCTTTGTATCGACAAAGAAGGAGGTCCGTGTTTATAATCTATTGAAGCAAAAACTCATGAAGAAACTGAAAACTGGACTCCGGGAAGTTTCTTCTATTGCTGTGCATCCAGCTGGTGATAATGTTATTGTGGGAAGCAGAGAAGGAAAATTATGTTGGTTTGATATGGACCTTTCATCACAGCCTTACAAAATTCTCAGCTGTCATCCAAAAGATATCACAAATGTTGCCTTCCATCGATCACGCCCGTTGTTCGCATCCTGCTCAGATGATTGCACTGCATATGTTTTCCATGGGATGGTTTACTTGGATCTGACACAGAATCCCCTTATTACACCGTTGAAAATACTAAGAGGACACAAAAACGTTAATGGAAGAGGAGTAATGGATTGCAAATTTCACCCGATGCAGCCATGGTTATTTACTGCTGGTGCAGATTCGAGGAGGGAAGCATGGTGGTTAGGTGCAGCCAGACTAATTATTGCTGATTCTGTGGAACTCGTTGAGTCCATTGCTATTGAAATCTCTTGGTTGGGAATTGTCGATGTGCTAATGATTTCCAGCTTCGTGGTTCCGTCCTTGGTTTCATTTAGGCCAATAATAGGTGTAACTTTGCTACACATGTATTAG 3609 43.53 MCNKLNQIRTGWFGRVDKQDVDQSGPGPGWCLVLHLVRVVSRPSNQNSLFPLFHLLLRLHPSMESLKKSVIKIAYTRDHANLSSLQRSFIPFLYMASSLYKLGLSLRHHFYLYGIFRKHRLPVPVISVGNLTWGGNGKTPMVEFIASWLAGSGISPLILNRGYAGGDEARMLRRHLSGSSIKVGIGADRRATAAWYFNKYGYVESQSSTLTEKHCLEQVGNLPKSEKIGAVILDDGMQHWSLHHDLEVVMFNGITLLGNGQLLPLGPLREPLAALKRADVAIIHHANLVSAQNIEDIVIMLRKIKDSLTVVFTEMCPSFFFEVTNINTIISLGTFSKSVVLCVSAIGSADAFVQTMQKIGAYHVDRLDFSDHHVFQDRDIALIKIKLEELEKRFASKPVIVVTEKDYDRDPMTFKGLHPYRVFALRSQLQIIRTKGCSENSFKTLLESVVRVKLSSVMSSRSAFTLRVFFQTSRRSITPLHASVALVFAGAGIPLRVSAVLFKAKRTSLSCYIRCFWDALNINHIFSVSITGIETMKLKLDSKSKSLPQASKLKKKHGEKKSHVNESSKSQAENQNSTELHLEQEALTLDEAPLQQLLDSAPPLDYSEDHVSAGDNHGNFENDQDQENENDNPVPDQVDEESDSSEDEVAPRNTIGDVPLECADDSKSWRKVYDEYNDETLIHIRLMLIGLSGMMLSTHCKMHLNQRGVLFGQNGKPRRWFNYSTEKTTHLSYIPAPKPKLPGHDESYNPSLEYISTQEEINSYQLMYEEDRPKFIPRRFTSMRSVPAYDNALKDAFERCLDLYLCPRVRKKCINIDPESLKPKLPNRKDLRPYPTTCYLEYRGHKDAVMSISTEANGQWIASSSLDGTVRIWEVESGRCLKVWELGEAVKGVDVLLLNTGFGDGEVQAKIKELLHVDTLPGTENSDKTPVATWLQDDKIEGIRLRHFKTVTAVEWHRKGDYLSTLSRKLTQKIPFKLHGLPVSSVFHPTQSILFVSTKKEVRVYNLLKQKLMKKLKTGLREVSSIAVHPAGDNVIVGSREGKLCWFDMDLSSQPYKILSCHPKDITNVAFHRSRPLFASCSDDCTAYVFHGMVYLDLTQNPLITPLKILRGHKNVNGRGVMDCKFHPMQPWLFTAGADSRREAWWLGAARLIIADSVELVESIAIEISWLGIVDVLMISSFVVPSLVSFRPIIGVTLLHMY 1202
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 10689960 10705170 + ClCG09G010880.2 Cla09g01016 280436

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g01016 1202 Pfam Tetraacyldisaccharide-1-P 4'-kinase 91 446 IPR003758 GO:0005524|GO:0009029|GO:0009245
Cla09g01016 1202 Hamap Tetraacyldisaccharide 4'-kinase [lpxK]. 70 451 IPR003758 GO:0005524|GO:0009029|GO:0009245
Cla09g01016 1202 Pfam BOP1NT (NUC169) domain 726 835 IPR012953 GO:0006364
Cla09g01016 1202 ProSitePatterns Trp-Asp (WD) repeats signature. 861 875 IPR019775 -
Cla09g01016 1202 ProSiteProfiles Trp-Asp (WD) repeats profile. 842 883 IPR001680 GO:0005515
Cla09g01016 1202 PANTHER RIBOSOME BIOGENESIS PROTEIN BOP1 BLOCK OF PROLIFERATION 1 PROTEIN 551 662 IPR028598 GO:0042254
Cla09g01016 1202 PANTHER RIBOSOME BIOGENESIS PROTEIN BOP1 BLOCK OF PROLIFERATION 1 PROTEIN 724 1145 IPR028598 GO:0042254
Cla09g01016 1202 Pfam WD domain, G-beta repeat 838 873 IPR001680 GO:0005515
Cla09g01016 1202 Pfam WD domain, G-beta repeat 1054 1090 IPR001680 GO:0005515
Cla09g01016 1202 Pfam WD domain, G-beta repeat 1106 1139 IPR001680 GO:0005515
Cla09g01016 1202 MobiDBLite consensus disorder prediction 625 646 - -
Cla09g01016 1202 MobiDBLite consensus disorder prediction 601 661 - -
Cla09g01016 1202 Gene3D - 825 1146 IPR015943 GO:0005515
Cla09g01016 1202 MobiDBLite consensus disorder prediction 610 624 - -
Cla09g01016 1202 SUPERFAMILY WD40 repeat-like 799 1141 IPR036322 GO:0005515
Cla09g01016 1202 SMART BOP1NT_2 650 835 IPR012953 GO:0006364
Cla09g01016 1202 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 842 879 - -
Cla09g01016 1202 TIGRFAM lpxK: tetraacyldisaccharide 4'-kinase 116 407 IPR003758 GO:0005524|GO:0009029|GO:0009245
Cla09g01016 1202 SMART WD40_4 1009 1048 IPR001680 GO:0005515
Cla09g01016 1202 SMART WD40_4 969 1006 IPR001680 GO:0005515
Cla09g01016 1202 SMART WD40_4 835 874 IPR001680 GO:0005515
Cla09g01016 1202 SMART WD40_4 1103 1156 IPR001680 GO:0005515
Cla09g01016 1202 SMART WD40_4 1052 1091 IPR001680 GO:0005515
Cla09g01016 1202 MobiDBLite consensus disorder prediction 547 578 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g01016 K14824 ERB1, BOP1; ribosome biogenesis protein ERB1 - csv:101220511 783.097
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g00153 Cla-Chr8:2969811 Cla09g01016 Cla-Chr9:10689960 4.24E-42 dispersed
Cla09g01016 Cla-Chr9:10689960 Cla08g00264 Cla-Chr8:5522766 2.84E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g529 . . . . . Bpe08g01118 . . . . Cma01g01123 . Car01g00996 . Sed04g3221 . Cpe02g00778 Bhi09g01657 Tan01g4565 Cmetu01g0146 . Hepe01g1264 Mch11g1198 . . . . . . . . . Cone9ag0064 . . Lsi02g01897 Csa07g01102 . . . . . . . . Bma07g01289 . . Cmo01g01174 . . . . . . . . . . . . . . Cla09g01016 Cam09g1073 Cec09g1073 Cco09g1092 . . Cre09g1038 . . . Cme01g01020
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008700 0 1 1 2 1 0 1 0 0 1 1 0 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 6 6 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla09g01016 Cla_Chr09 FPKM 14.000153 14.636612 10.188029 11.048804 4.797042 4.433674 5.613042 11.796194 12.186243 13.611276