Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g01020 ATGGACTGGACCAGAGGCCCTGCCGTCGGCCGCGGCTCCTCCGCCACCGTCTATTTGGCCACAGCCGCCTCCTCCTGCCACCAATTCGCCGTCAAATCCTCCAACCTCACTTCATCGGCGCTGTTGCAGAAGGAGCACGCTCTTCTTTCCAATTTGAGCTCCCCATATCTAATCAAGTGCTTAGGTTTCGACATTGAAACCGAAGCCTTGAATCCGCCGGTGTTCAATTTGTTCATGGAGTATTTGCCGGAGGGGACACTGTGGGATGCGATACAGAGCAACGGCGGTCGGATGGAGGAATCGACGATCGGAGTATTTTCGCGTCAGATTCTCAAAGGATTGGAGTACCTTCACGCTAATGGATTAGCACATTGCGATATCAAGAGCCGAAATCTGTTATTGAGTGATGAGGGTTTGAAAATCGCCGATCTCGGTTGTGCGAAATTTGTGGATGAAATTTCCGGTAATGGAGTTGGGGCTTTTTCTGGTTCGCCGGCGTTCATGGCGCCCGAGGTTGCGAGAGGTGAAGAACAGGGGTTTCCGGCGGATGTTTGGGCTTTTGGATGCACAGTCATTGAAATGGCTACTGGCGATCATCCATGGCCGGAAATGGAGGATCCGGTATCGGCGTTGTATCGGATTGGATTTTCCGGCGACTTACCGGAGATCCCGCGGTGGTTGTCGAAGGGTGCGAGGGATTTTGTCGCCAAGTGTTTGATAAAAGACCCGAAAGAAAGATGGACTGTGAAACGGCTTCTTGAGCATCCGTTTCTTCAGGGATTTGATTCTGAATCGGAGATTGAATGCTCGAGGATGAAAACGATGAATTCTTCTCCGAACTGTGTTTTGGATCAGAGCTTTTGGGATTCAATGGAAGATTTGGAGACTCCATTGAAGGTGACCCATCAAGCTTCTATGGCGGGTTGTCCGGCTGAGAGGATTAGAAGTTTGGCTGGTAATTTGTCTTCTGATTGGGATTTGGAATGGGATGATCGGGATTGGGTTTTGATCAGAAACAATGGCGTCGGCGGTGGAAGCCATGGAAATGGATCTGTGAGCTCAGATATTTTTGCCTCAGTTGAAGAAGAAGAAATTTTGAACTTGGAATTTGAAGAAAATTCTGTATTGTTCTGTTTAGTTGATAATGATTTTAGTGTTGTGAAGAGTGGGAATGGAGGATTAGAAATGGAATTTGAGAGTGATTTTATGTTGGAAACTGTGAGATCTGAAGTTGAAAAGTATTGTTATTCTTCATTAATCCAAATTCATCTATTATTTCCTCATCGTCTTTCATCTTCATCTTCATCTTCTTCTTTTGTTATTTTTTCAAATTTTGATATTGATCAGAGAAAAAGTAAGTTTCGCCATTTCAGTCGAACGCCGCTACGCCGGAGCTTTCTTCTTGGAGCAATTGCCCAATTCAAAGCTCCAAATCTCCGTCCACACTTCGCGGCTAGAGTTCGGGCCGGCAGTGTAGTTTCAGAGATTGTAATGGAAGCGCCGCCGTTCTCCATCGCTGTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCAGTCTGTATTTCGATCACTTTCGTCGTTGTCTTATACCAGCTCCCTCATTTGTCTTCGCAACAATCGTTACAAAGGTCGTCATCTCAAAGTCAAGTGCTCCGGTAAGTTCGCAGTTCGTGCCTCATTTGGTGGTGACTCAGTTGTGACTTTACTGGATTACGGTGCTGGTAATGTTCGTAGTGTGAGGAATGCAATTCGTTACCTTGGCTTCGACATCAAAGATGTGCAAACTCCAGAAGACATTCTAAATGCAAAACGCCTAATATTTCCTGGAGTTGGGGCATTTGCTCCTGCCATGGATGTGCTAAACAGTAAAGGCATGGCTGAAGCACTTTGCACTTATATTGAGAATGATCGCCCATTTTTAGGCATCTGTCTTGGGCTTCAACTACTCTTTGAGTCAAGCGAGGAGAATGGACCAGTAAAAGGTCTTGGCTTAATACCTGGTGTGGTTGGACGTTTTGACTCTTCCAATGGCTTTAGGGTACCCCATATTGGGTGGAATGCTTTGGAAATCTCAGAGGACTCTGAGATATTGGATGAAATTTCTAACCGTCATGTCTACTTTGTTCACTCTTACCGTGCTATGCCATCAGACAAGAACAAGGATTGGATCTCTTCTACTTGCAGCTATGGTGACAGGTTTATAGCTTCAGTTAGAAGGGGAAATGTTCATGCAGTTCAATTCCACCCAGAAAAAAGTGGAGATGTAGGTCTGTCTGTCCTACGAAGATTCCTGTTTCCAAAGTTGTCTGTGACGAAGAAGCCTACTGAGGGAAAGGCATCAAGGCTTGCAAAAAGGGTAATTGCTTGTCTTGATGTGCGGACAAATGACCAAGGGGACCTTGTTGTTACCAAAGGGGACCAATATGATGTAAGGGAGCAGACAGAAGAGAATGAGGTGAGGAACCTTGGCAAGCCGGTAGAGCTTGCTGGACAGTACTACAAGGATGGTGCTGATGAGGTCAGTTTTCTGAATATAACCGGTTTCCGTGACTTCCCTCTTGGCGACTTGCCAATGTTGCAGGTGCTGAGATACACATCAGAAAATGTTTTTGTACCATTGACTGTTGGGGGCGGGATTAGAGATTTTAAGGATGCAAATGGCAGACACTATTCTAGCTTGGAAGTTGCTTCAGAATATTTTAGATCTGGAGCTGATAAAATATCTATTGGAAGTGATGCAGTTTATGCTGCCGAAGAATATTTAAGAACTGGCGTAAAGACCGGAAAGAGCAGCTTGGAGCAGATTTCTAAGGTTTATGGAAACCAGGCTGTTGTGGTAAGTATTGATCCTCGTAGAGTGTACCTTAAAAGTCCCAATGATGTGGAGTTCAAAGTCATACGAGTAACAAACCCAGGTCCTAATGGAGAAGAGTATGCATGGTATCAATGTACAGTAAATGGAGGTCGAGAAGGTCGACCTATTGGCGCTTTTGAGCTTGCAAAAGCAGTTGAGGAGCTTGGAGCTGGAGAAATACTGCTGAACTGCATAGATTGTGATGGTCAAGGAAAAGGATTTGATACAGATTTGGTAAAGCTGATATCAGATTCTGTGAGCATACCCGTTATTGCCAGCAGTGGTGCTGGCTCTCCTCACCATTTCTCTGAGGTCTTTAACAAAACGAATGCATCTGCTGCCCTTGCCGCTGGCATTTTTCATCGCAAGGAGGTGCCTATTCAGTCCGTAAAAGAGCATTTATTAAAGGAAGGCATAGAAGTCAGAATCTAA 3294 45.08 MDWTRGPAVGRGSSATVYLATAASSCHQFAVKSSNLTSSALLQKEHALLSNLSSPYLIKCLGFDIETEALNPPVFNLFMEYLPEGTLWDAIQSNGGRMEESTIGVFSRQILKGLEYLHANGLAHCDIKSRNLLLSDEGLKIADLGCAKFVDEISGNGVGAFSGSPAFMAPEVARGEEQGFPADVWAFGCTVIEMATGDHPWPEMEDPVSALYRIGFSGDLPEIPRWLSKGARDFVAKCLIKDPKERWTVKRLLEHPFLQGFDSESEIECSRMKTMNSSPNCVLDQSFWDSMEDLETPLKVTHQASMAGCPAERIRSLAGNLSSDWDLEWDDRDWVLIRNNGVGGGSHGNGSVSSDIFASVEEEEILNLEFEENSVLFCLVDNDFSVVKSGNGGLEMEFESDFMLETVRSEVEKYCYSSLIQIHLLFPHRLSSSSSSSSFVIFSNFDIDQRKSKFRHFSRTPLRRSFLLGAIAQFKAPNLRPHFAARVRAGSVVSEIVMEAPPFSIAVSSSSSSSSSSSSSQSVFRSLSSLSYTSSLICLRNNRYKGRHLKVKCSGKFAVRASFGGDSVVTLLDYGAGNVRSVRNAIRYLGFDIKDVQTPEDILNAKRLIFPGVGAFAPAMDVLNSKGMAEALCTYIENDRPFLGICLGLQLLFESSEENGPVKGLGLIPGVVGRFDSSNGFRVPHIGWNALEISEDSEILDEISNRHVYFVHSYRAMPSDKNKDWISSTCSYGDRFIASVRRGNVHAVQFHPEKSGDVGLSVLRRFLFPKLSVTKKPTEGKASRLAKRVIACLDVRTNDQGDLVVTKGDQYDVREQTEENEVRNLGKPVELAGQYYKDGADEVSFLNITGFRDFPLGDLPMLQVLRYTSENVFVPLTVGGGIRDFKDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEEYLRTGVKTGKSSLEQISKVYGNQAVVVSIDPRRVYLKSPNDVEFKVIRVTNPGPNGEEYAWYQCTVNGGREGRPIGAFELAKAVEELGAGEILLNCIDCDGQGKGFDTDLVKLISDSVSIPVIASSGAGSPHHFSEVFNKTNASAALAAGIFHRKEVPIQSVKEHLLKEGIEVRI 1097
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 10720401 10742289 - ClCG09G010930.2 Cla09g01020 280440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g01020 1097 SMART serkin_6 3 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla09g01020 1097 CDD STKc_MAPKKK 2 258 - -
Cla09g01020 1097 SUPERFAMILY Ribulose-phoshate binding barrel 784 1096 IPR011060 -
Cla09g01020 1097 Pfam Histidine biosynthesis protein 788 1079 IPR006062 GO:0000105
Cla09g01020 1097 ProSiteProfiles Glutamine amidotransferase type 1 domain profile. 568 776 - -
Cla09g01020 1097 TIGRFAM hisF: imidazoleglycerol phosphate synthase, cyclase subunit 785 1096 IPR004651 GO:0000105|GO:0000107
Cla09g01020 1097 Hamap Imidazole glycerol phosphate synthase subunit HisH [hisH]. 568 769 IPR010139 GO:0000105|GO:0016763
Cla09g01020 1097 SUPERFAMILY Protein kinase-like (PK-like) 3 305 IPR011009 -
Cla09g01020 1097 PANTHER IMIDAZOLE GLYCEROL PHOSPHATE SYNTHASE HISHF 580 1097 - -
Cla09g01020 1097 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 26 - -
Cla09g01020 1097 SUPERFAMILY Class I glutamine amidotransferase-like 568 768 IPR029062 -
Cla09g01020 1097 Coils Coil 1090 1097 - -
Cla09g01020 1097 ProSitePatterns Protein kinases ATP-binding region signature. 9 32 IPR017441 GO:0005524
Cla09g01020 1097 Gene3D - 566 788 IPR029062 -
Cla09g01020 1097 Gene3D Aldolase class I 789 1097 IPR013785 -
Cla09g01020 1097 TIGRFAM IMP_synth_hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit 569 767 IPR010139 GO:0000105|GO:0016763
Cla09g01020 1097 ProSitePatterns Serine/Threonine protein kinases active-site signature. 122 134 IPR008271 GO:0004672|GO:0006468
Cla09g01020 1097 Pfam Glutamine amidotransferase class-I 571 766 IPR017926 -
Cla09g01020 1097 PANTHER IMIDAZOLE GLYCEROL PHOSPHATE SYNTHASE SUBUNIT HISF/H IGP SYNTHASE SUBUNIT HISF/H 580 1097 - -
Cla09g01020 1097 CDD GATase1_IGP_Synthase 569 767 IPR010139 GO:0000105|GO:0016763
Cla09g01020 1097 CDD HisF 787 1091 IPR004651 GO:0000105|GO:0000107
Cla09g01020 1097 Gene3D Transferase(Phosphotransferase) domain 1 2 309 - -
Cla09g01020 1097 ProSiteProfiles Protein kinase domain profile. 3 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla09g01020 1097 Pfam Protein kinase domain 7 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01652 Cla-Chr1:31386507 Cla09g01020 Cla-Chr9:10720401 3.50E-66 dispersed
Cla01g02127 Cla-Chr1:35533052 Cla09g01020 Cla-Chr9:10720401 2.65E-92 dispersed
Cla02g00871 Cla-Chr2:12323447 Cla09g01020 Cla-Chr9:10720401 3.59E-94 dispersed
Cla03g00057 Cla-Chr3:605060 Cla09g01020 Cla-Chr9:10720401 2.45E-57 dispersed
Cla09g01020 Cla-Chr9:10720401 Cla06g00558 Cla-Chr6:6766067 3.94E-49 dispersed
Cla09g01020 Cla-Chr9:10720401 Cla02g00198 Cla-Chr2:2096574 1.93E-99 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80807 PF00977 His_biosynth 2.20E-44 CL0036 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g01020 K01663 - csv:101205184 1108.59