Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g01025 ATGGCGAATCTCCCTCAATCGCTCTCCATGAATGCTGCATTTGGAGGTCCCGGTCCGTCAATCCCCGGTGCCTCCGGAGCTCCACCGAACAAGGAGCGAAAAATGGCTTCTTCGGAGCAGTTGGTGCTCGACCTCAGCAATCCGGATCTCCGGGAGAACGCTCTCCTTGAACTGTCGAAGAAGAGGGAACTGTTTCAAGATTTGGCCCCATTGTTGTGGAACTCCTTTGGAACCATTGCTGCCTTATTGCAAGAGATTGTATCGATATATCCCGTTCTTTCACCCCCAAATCTAACCCCTGCACAGTCAAATAGAGTTTGCAATGCTCTTGCTCTTCTTCAGTGTGTAGCTTCTCATTCAGATACAAGGATGTTGTTTCTCAATGCTCACATACCGTTGTATTTGTATCCTTTTCTTAACACAACTAGCAAGTCGAGGCCTTTTGAGTACTTGCGCCTTACTAGCTTAGGTGTCATTGGTGCGTTGGTGAAGGTAGATGATACAGAAGTAATAAGTTTTCTTCTGTCAACTGAAATAATTCCCCTATGCCTGCGTACCATGGAAATGGGAAGTGAGTTGTCAAAAACAGTTGCAACATTTATCGTGCAGAAAATTTTGCTGGATGATGTGGGGTTAGATTATATTTGTACTACAGCTGAGCGATTTTTTGCTGTCGGCCGGGTTCTGGGCAATATGGTAGCAGCTCTTGCTGAACAGCCCTCCTCTCGGCTTTTGAAACACATAATTCGATGTTATCTTCGATTGTCAGATAATCCAAAGGCTTGTGACGCCTTGAGGAGCTGTCTTCCAGACATGTTGAGGGATGCTACTTTCAATAGCTGCCTTCGGGAGGATCCAACCACTAGGAGGTGGCTGCAGCAGTTGCTACACAATGTAGGAATGAGTAGGGTTCCAGCACTTCAGGCAGGAGCTGGATTTGATCACATGATGGTCTTAGCCATGAAACCTCGTTTGTACCAATTAAAGAGCGTGGTTGAAACTTCAATGAAGATGTTGATAGAATATCAATCTTGGAATATGAATTTGAACAATGTTAAGGTTCCCAAAATGCCTGGTGGTGGTTCTGCTTCTTCTTTGGTGAAGGTTGGGATTATTGGTGGGCTTGGGTTATATGCAGCTGCCAAGAGTCTCTACAATGTTGAGGGAGGGCATCGGGCCATCGTGTTTAACCGTCTAGTTGGAATTAAAGATGAGGTTTATCCTGAAGGAACACATTTTATAATCCCTTGGTTCGAGAGGCCAATCATATATGATGTCCGTGCACGACCCAATCTAGTGGAGAGTAGTTCTGGAAGCCGAGACCTCCAGATGGTTAAAATTGGTCTTCGAGTTCTCACCCGCCCGCTACCAAGTGAATTACCTACATTGTATAGAACACTAGGTGAAAACTATAATGAAAGGGTTCTGCCTTCCATTATTCACGAAACTCTGAAATCTGTAGTCGCTCAGTACAATGCCAGCCAACTTCTTACGCAAAGAGAGGCTGTAAGTAGAGAAATCCGAAAGACTTTGACTGAGAGAGCAGCCCAGTTCAATATTGCTCTTGATGATGTTTCCATAACAAGTTTAACTTTTGGAAAGGAGTTTACAGCTGCAATCGAAGCCAAGCAAGTGGCTGCCCAAGAAGCCGAAAGAGCTAAATTCGTTGTCGAGAAGGCTGAACAGGACAAGAGAAGTGCTATAATTAGAGCACAGGGAGAAGCCAAGAGTGGGCAGCTGATAGGACAAGCTGTTGCCAATAACCCTGCGTTTATGACTCTGAGGAAGATTGAAGCAGCAAGAGAAATTGCACATACTATTGCAAACTCATCCAACAAAGTTTTCCTCAATTCAGATGATCTGTTGTTGAACCTTCAAGAGATGAATTTGGAGCCCAGTGGAAAGAAGTAA 1911 44.74 MANLPQSLSMNAAFGGPGPSIPGASGAPPNKERKMASSEQLVLDLSNPDLRENALLELSKKRELFQDLAPLLWNSFGTIAALLQEIVSIYPVLSPPNLTPAQSNRVCNALALLQCVASHSDTRMLFLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKVDDTEVISFLLSTEIIPLCLRTMEMGSELSKTVATFIVQKILLDDVGLDYICTTAERFFAVGRVLGNMVAALAEQPSSRLLKHIIRCYLRLSDNPKACDALRSCLPDMLRDATFNSCLREDPTTRRWLQQLLHNVGMSRVPALQAGAGFDHMMVLAMKPRLYQLKSVVETSMKMLIEYQSWNMNLNNVKVPKMPGGGSASSLVKVGIIGGLGLYAAAKSLYNVEGGHRAIVFNRLVGIKDEVYPEGTHFIIPWFERPIIYDVRARPNLVESSSGSRDLQMVKIGLRVLTRPLPSELPTLYRTLGENYNERVLPSIIHETLKSVVAQYNASQLLTQREAVSREIRKTLTERAAQFNIALDDVSITSLTFGKEFTAAIEAKQVAAQEAERAKFVVEKAEQDKRSAIIRAQGEAKSGQLIGQAVANNPAFMTLRKIEAAREIAHTIANSSNKVFLNSDDLLLNLQEMNLEPSGKK 636
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 10810948 10828185 + ClCG09G010980.2 Cla09g01025 280445

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g01025 636 Gene3D - 30 300 IPR011989 -
Cla09g01025 636 Gene3D Band 7 domain 414 546 IPR036013 -
Cla09g01025 636 PANTHER UNCHARACTERIZED 1 317 - -
Cla09g01025 636 PANTHER BNAA05G20110D PROTEIN 1 317 - -
Cla09g01025 636 PRINTS Prohibitin signature 427 443 IPR000163 GO:0016020
Cla09g01025 636 PRINTS Prohibitin signature 445 464 IPR000163 GO:0016020
Cla09g01025 636 PRINTS Prohibitin signature 468 486 IPR000163 GO:0016020
Cla09g01025 636 PRINTS Prohibitin signature 491 507 IPR000163 GO:0016020
Cla09g01025 636 PRINTS Prohibitin signature 514 533 IPR000163 GO:0016020
Cla09g01025 636 PRINTS Prohibitin signature 539 562 IPR000163 GO:0016020
Cla09g01025 636 PRINTS Prohibitin signature 562 578 IPR000163 GO:0016020
Cla09g01025 636 SUPERFAMILY ARM repeat 43 298 IPR016024 -
Cla09g01025 636 Pfam SPFH domain / Band 7 family 386 561 IPR001107 -
Cla09g01025 636 SMART PHB_4 383 544 IPR001107 -
Cla09g01025 636 SUPERFAMILY Band 7/SPFH domain 415 551 IPR036013 -
Cla09g01025 636 MobiDBLite consensus disorder prediction 13 39 - -
Cla09g01025 636 CDD SPFH_prohibitin 384 577 IPR000163 GO:0016020
Cla09g01025 636 Coils Coil 543 563 - -
Cla09g01025 636 Pfam Cell differentiation family, Rcd1-like 41 299 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g01025 K12606 RCD1, CNOT9, CAF40; CCR4-NOT transcription complex subunit 9 - csv:101204529 613.224
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00203 Cla-Chr2:2140172 Cla09g01025 Cla-Chr9:10810948 1.90E-103 dispersed
Cla06g01663 Cla-Chr6:30155184 Cla09g01025 Cla-Chr9:10810948 7.32E-88 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g550 . . . . Bpe09g00162 . Bma10g00565 Bma13g01070 . . . Cma09g00964 Car01g00990 Car09g00879 . Cpe06g00779 Cpe02g00784 Bhi09g01681 . . . Hepe01g1257 . . . . . . . . . . . . Cone15ag1177 Lsi02g01890 Csa07g01111 . . Blo07g00893 Blo10g00843 Bda05g00710 . . . . . . Cmo01g01165 Cmo09g00966 . . . . . . . . . . . . . Cla09g01025 Cam09g1080 Cec09g1079 Cco09g1100 . . Cre09g1045 . . . Cme01g01013
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004472 1 3 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 42
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61725 PF04078 Rcd1 5.50E-129 No_clan Cla TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla09g01025 Cla_Chr09 FPKM 12.044387 13.798399 15.11732 15.924827 3.331991 4.00639 3.265082 40.409122 39.942562 44.779644