Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g01029 ATGGGAGATAGTAATAGAGAAGCGTTGATTAGCAGAAAATCGAGCGTATTCAAGCGCTCAGCCTCTCACGCTCACGATGAATTACAAAGCTTCAGATCGTACCTCCGATGGATGTGCGTAGATCAATCCGACATTTGGACGGCCGGATTGTCCTGGTCGATGTTCTTCCTTTTCGCTATAATCGTTCCAGCGACCTCGCATTTCGTTCTGGCTTGTGCTTCTTGTGATAGCAATCACGCGAGGCCGTTTGATCGAGTCGTTCAATTGTCTCTCAGCAGTGTGGCGACGGTTTCTTTCCTCTGTCTTTCGAGTTTCATAAGGAGATATGGACTTCGGAGATTCTTGTTCTTCGATAAACTTTGCGATGAAAGCGAAACTGTGAGAAGAGGATATACAATCAAGCTCAATAGATCACTTCGAGTACTATCAGCGTTCGTGATCCCATGCTTCGCAGCAGAGAGCGCGTACAAAATCTGGTGGTACGCATCAGGCGCGTCACAAATCCCATTCCTGGGGAATGTTATAGTGAGCGACGCAGTAGCATGCGCCATGGAGCTTCTATCGTGGCTCTATAGAACCACCGTCATATTCCTTGTGTGCATTCTCTTCCGTCTGATCTGCGACCTCCAGATCCTCCGCCTCCAGGACTTCGCCACCGTCTTCCAGGTCGATTCCGACGTCGGCTCCGTCCTCTCCGAGCATTTGAGGATCAGACGCCATCTCCGAATCATCAGCCACCGTTACCGCGCCTTCATACTTGGCTCCCTCGTTCTCGTTACCGGCAGCCAGTTCACTTCCCTTCTAATTACCACTAAATCCTCTTCCAATCTCAATATCTACATTGCCGGCGAACTTGCGCTATGCTCCATGACACTTCTTACCAGTCTTATGATATTGCTACGAAGTGCTACAAAAATCACTCACAAAGCGCAATCAGTGACGTCGCTTGCTGCCAAGTGGCATGTGTGTGCGACGTTGGATTCGTTTGACGTCACGGACGGAGAAACACCCATGGCTTCCGCCGTACAACAGGTTTTTCCAGTGAGCCACGACAGCGGAGAAGACTCGGAAGGTGACGAAGAAGATGATTTGGACAACACAAAGTTGATCCCAGCCTACGCTTACAGCACCATCTCTTTCCAAAAGAGACAGGCATTAGTGACGTATTTCGAGAATAACAGAGCTGGAATAACGATATACGGGTTTACCCTGGATAGGACTACACTCCACACCATCTTTGGAATTGAGTTATCCTTGGTTCTTTGGCTGCTTGGCAAAACCATCGGTTTTTCTTAA 1296 48.69 MGDSNREALISRKSSVFKRSASHAHDELQSFRSYLRWMCVDQSDIWTAGLSWSMFFLFAIIVPATSHFVLACASCDSNHARPFDRVVQLSLSSVATVSFLCLSSFIRRYGLRRFLFFDKLCDESETVRRGYTIKLNRSLRVLSAFVIPCFAAESAYKIWWYASGASQIPFLGNVIVSDAVACAMELLSWLYRTTVIFLVCILFRLICDLQILRLQDFATVFQVDSDVGSVLSEHLRIRRHLRIISHRYRAFILGSLVLVTGSQFTSLLITTKSSSNLNIYIAGELALCSMTLLTSLMILLRSATKITHKAQSVTSLAAKWHVCATLDSFDVTDGETPMASAVQQVFPVSHDSGEDSEGDEEDDLDNTKLIPAYAYSTISFQKRQALVTYFENNRAGITIYGFTLDRTTLHTIFGIELSLVLWLLGKTIGFS 431
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 10887289 10893967 + ClCG09G011030.1 Cla09g01029 280449

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g01029 431 Pfam Protein of unknown function (DUF3537) 26 415 IPR021924 -
Cla09g01029 431 PANTHER EXTRACELLULAR LIGAND-GATED ION CHANNEL PROTEIN (DUF3537) 9 431 - -
Cla09g01029 431 PANTHER RAS GUANINE NUCLEOTIDE EXCHANGE FACTOR K 9 431 IPR021924 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g01029 - - - csv:101212672 783.097
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00985 Cla-Chr1:14227829 Cla09g01029 Cla-Chr9:10887289 2.03E-159 dispersed
Cla08g01253 Cla-Chr8:25451778 Cla09g01029 Cla-Chr9:10887289 1.09E-84 dispersed
Cla08g01691 Cla-Chr8:29512471 Cla09g01029 Cla-Chr9:10887289 8.77E-62 dispersed
Cla08g01692 Cla-Chr8:29520522 Cla09g01029 Cla-Chr9:10887289 4.00E-64 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g565 Blo03g00544 . Bda07g00377 . . . . . . . Cma01g01116 . Car01g00986 . Sed01g2008 . Cpe02g00787 Bhi09g01690 Tan01g3117 Cmetu12g0552 . Hepe01g1252 Mch11g1210 . . . . . . . . Cone6ag0045 Cone9ag0054 . . . Csa07g01027 . . . . . . . . . Bma14g00325 . Cmo01g01162 . . . . . . . . . . . . . . Cla09g01029 Cam09g1084 Cec09g1083 Cco09g1104 . . Cre09g1049 . . Chy01g01051 Cme01g01003
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001990 3 2 2 1 1 2 3 2 2 2 2 2 3 2 2 3 2 3 3 2 2 2 2 2 2 1 2 3 3 2 65
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla09g01029 Cla_Chr09 FPKM 10.920243 11.815125 15.490547 14.008896 11.529097 12.38605 10.793332 18.338289 16.85158 16.009928