Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g01043 ATGACAATCGACCACCACTCCGATCAAACCACCGATGATGATTCCCACCATCTCCATCCTACTCTTCCCACGCCAGTTGTCGCCAATGGCACCGACTGCGAGAATGCCGGAGATGACCTCTTCGTCCCTCCCCTGAACTTCGCTGTCGTTGACAACGGCATTTTCCGCTCCGGCTTCCCCGACTCTTCCAACTTCTCTTTCTTGCAGACGTTAGGCCTTCGTTCGATTATATGTCTTTGTCCCGAGCCATATCCTGAGGCCAACATGGATTTTCTCAAGTCCAATGGGATCCGATTGTTTCAATTTGGGATTGAAGGTTCTAAGGCTGGTTCAGACAAGGTTGATGCATATGTAAACTTGATTCTCGAGTGTATGAGGAATTTGGATATGAGCGCTGATCAAATGTACTATTTGGAGCCTTTTGTGAACATTCCAGACTACACAATTCGTGAAGTACTTAAAGTTATTCTTGATGTGAGGAATCGCCCAGTTTTAATCCATTGCAAGCGAGGGAAGCACCGAACTGGTTGTGTTGTGGGATGCTTTAGAAAGTTGCAGAAATGGTGCCTATCGTCAGTGTTTGATGAGTACCAGCGGTTTGCCGCTGCCAAGGCAAGAGTTTCAGATCAGAGGTTCATTGAACTATTCGACATTTCTGGCTTGAAGCATTTGCCACCATCATTTTCTTGTTCCGAAAGGCCTCACATTTCCTTCAAGTGA 720 46.53 MTIDHHSDQTTDDDSHHLHPTLPTPVVANGTDCENAGDDLFVPPLNFAVVDNGIFRSGFPDSSNFSFLQTLGLRSIICLCPEPYPEANMDFLKSNGIRLFQFGIEGSKAGSDKVDAYVNLILECMRNLDMSADQMYYLEPFVNIPDYTIREVLKVILDVRNRPVLIHCKRGKHRTGCVVGCFRKLQKWCLSSVFDEYQRFAAAKARVSDQRFIELFDISGLKHLPPSFSCSERPHISFK 239
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 11085324 11089907 + ClCG09G011180.2 Cla09g01043 280463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g01043 239 MobiDBLite consensus disorder prediction 1 19 - -
Cla09g01043 239 ProSiteProfiles Dual specificity protein phosphatase domain profile. 46 230 IPR020422 GO:0006470|GO:0008138
Cla09g01043 239 CDD PFA-DSP_Siw14 40 217 - -
Cla09g01043 239 PANTHER - 9 234 - -
Cla09g01043 239 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 41 218 IPR029021 -
Cla09g01043 239 Gene3D Protein tyrosine phosphatase superfamily 40 220 IPR029021 -
Cla09g01043 239 Pfam Tyrosine phosphatase family 42 220 IPR004861 -
Cla09g01043 239 ProSitePatterns Tyrosine specific protein phosphatases active site. 166 176 IPR016130 GO:0016311|GO:0016791
Cla09g01043 239 PANTHER TYROSINE-PROTEIN PHOSPHATASE 9 234 - -
Cla09g01043 239 MobiDBLite consensus disorder prediction 1 23 - -
Cla09g01043 239 PRINTS Plant and fungal dual specificity phosphatase signature 144 158 IPR020428 GO:0016791
Cla09g01043 239 PRINTS Plant and fungal dual specificity phosphatase signature 97 111 IPR020428 GO:0016791
Cla09g01043 239 PRINTS Plant and fungal dual specificity phosphatase signature 41 58 IPR020428 GO:0016791
Cla09g01043 239 PRINTS Plant and fungal dual specificity phosphatase signature 78 91 IPR020428 GO:0016791
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g01026 Cla-Chr3:19567511 Cla09g01043 Cla-Chr9:11085324 8.07E-67 dispersed
Cla02g01771 Cla-Chr2:32683792 Cla09g01043 Cla-Chr9:11085324 2.20E-104 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g01043 K18045 - csv:101209768 354.755