Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g01071 ATGGCGGACGCCGCTCACAGAGACGACCGTACACCTCATATCCTCGTGGTGCCGTACCCAGCGCAAGGCCACATCAGTCCGATGCTCCAATTCTCTAAGCGCCTGAGGAAAAAAGGAGTCAAAATCAGCCTCGTTACAACCAAATTCATCGCTCGCACTTCTCACTCCATTCCTTCTTCTTTCCCCGTCCTCACCATCTCCGACGGCCATGACGACGGCGGTATCGACTCCGCTGAGAGCATCCAGATCTACCTCGATTCCCTCCGCCGATTTGGATCTGAGTCCCTGCGGGAGCTTCTCCAGCAGCTCTCCTCCTCTGCTTCCCCTGCCGATTGCGTCATCTACGACGGCTTCAACGCTTGGGCTCAGGATGTCGCGAACGAGTTCAAGGTTATAAAGGCGGTGTTCTTCACTCAATCTTGCGCCGTCGCTGACATTTATTACCACGTCTACAAAGGATTAATCAAGTTGCCTCTTCCGGACACAGAGATTGAGATTCCTGGTTTGCCGCCGATGAAACCACCGGAATTTCCGTCGTTTATATATCAATTAGGATCATATCCAGCGTACTACGATGTGATTGTGAATCAGTACGCGAACGTTCATAAAGCCGATTTGATTTTCTGGAACACGTTTTACGAATTGGAACGAGAGGTTTTGGATTGTTTGAAGAGAATATGGCCGGCGATTAGGCCGGTCGGACCGAGTATTCCTTCAGGATTTTTGGACGGGCGGATCGAAAACGACAGAGAGTACGGCCTCAGCTTCTTCAATGCGGACGGCGATGTTAGTCTGAAGTGGCTTGACGACCGGCGGAAAGAGTCGGTGGTTTTCGTTTCGTTTGGGAGTTTTGCGGAGGTGCCGGTGGAGCAAATGGAGGAGACGGCCGACTGCTTGAAGAACTGTAAATGGCCGTTTTTGTGGGTGGTCAGGACATCGGAGGCGGCGAAGCTTCCGACGGGTTTTATAGCGGAGACAGCGGAGAAAGGGCTAGTGGTATCGTGGTGCCGACAATTGGAGGTTCTGGCGCACGAAGCAATTGGATGCTTTGTGACACACTGTGGGTGGAACTCCACGTTGGAGGCAGTGAGTTTGGGAGTTCCGATGGTCGCGGTGCCGAGATGGACTGACCAGAATACAAATGCCAAGTTCATATCTGACGTTTGGAAAGTAGGCCTTAAAGCTTCGGCTCACAAAGACGGACTTGTGAAACGAGAAGCTCTGTTGCAGTGCATTGAGGAAGTGATGGGGGGAGACAGAGGTGATGAGATTAGAAAAAACGCCGAAGTATGGAAGGCGTTGGCTCGAAAGGCGTTTGAGGATGGTGGAAGCTTCGACGAAGTTGTCAATGAATTTCTCGCCAAATTTGTTAGTCGCTTTTAA 1383 51.41 MADAAHRDDRTPHILVVPYPAQGHISPMLQFSKRLRKKGVKISLVTTKFIARTSHSIPSSFPVLTISDGHDDGGIDSAESIQIYLDSLRRFGSESLRELLQQLSSSASPADCVIYDGFNAWAQDVANEFKVIKAVFFTQSCAVADIYYHVYKGLIKLPLPDTEIEIPGLPPMKPPEFPSFIYQLGSYPAYYDVIVNQYANVHKADLIFWNTFYELEREVLDCLKRIWPAIRPVGPSIPSGFLDGRIENDREYGLSFFNADGDVSLKWLDDRRKESVVFVSFGSFAEVPVEQMEETADCLKNCKWPFLWVVRTSEAAKLPTGFIAETAEKGLVVSWCRQLEVLAHEAIGCFVTHCGWNSTLEAVSLGVPMVAVPRWTDQNTNAKFISDVWKVGLKASAHKDGLVKREALLQCIEEVMGGDRGDEIRKNAEVWKALARKAFEDGGSFDEVVNEFLAKFVSRF 460
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 11338359 11341100 + ClCG09G011460.1 Cla09g01071 280491

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g01071 460 PANTHER GLUCOSYL/GLUCURONOSYL TRANSFERASES 12 457 - -
Cla09g01071 460 ProSitePatterns UDP-glycosyltransferases signature. 335 378 IPR035595 -
Cla09g01071 460 Pfam UDP-glucoronosyl and UDP-glucosyl transferase 274 392 IPR002213 GO:0008194
Cla09g01071 460 PANTHER GLYCOSYLTRANSFERASE 12 457 - -
Cla09g01071 460 Gene3D Glycogen Phosphorylase B; 251 437 - -
Cla09g01071 460 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 12 454 - -
Cla09g01071 460 CDD GT1_Gtf-like 12 436 IPR002213 GO:0008194
Cla09g01071 460 Gene3D Glycogen Phosphorylase B; 16 446 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g01071 K13691 SGT1; pathogen-inducible salicylic acid glucosyltransferase [EC:2.4.1.-] - csv:101211432 659.833
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g00232 Cla-Chr7:2581461 Cla09g01071 Cla-Chr9:11338359 0 dispersed
Cla09g01071 Cla-Chr9:11338359 Cla09g01074 Cla-Chr9:11363508 1.02E-170 dispersed
Cla09g01073 Cla-Chr9:11357546 Cla09g01071 Cla-Chr9:11338359 1.37E-23 dispersed
Cla09g01071 Cla-Chr9:11338359 Cla09g01072 Cla-Chr9:11350139 3.20E-10 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g769 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone16ag0496 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla09g01071 . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000058 4 15 3 3 0 12 6 14 12 8 10 12 8 12 11 10 13 4 8 15 11 12 13 19 6 16 9 12 12 11 301
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla09g01071 Cla_Chr09 FPKM 19.884964 21.229473 26.0907 25.175842 13.104739 11.32174 10.991778 50.464996 57.288086 52.750359