Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g01078 ATGCGAGCCGAAGACGAAGGGTTCGAAGATTGGGACGCTGATTTCTTGGACCAACTCATCCAAGTTGAAGAGCTTGCTATCTCCTCCACCGCCAACAATCCCATTCCCATTCCGATTCCGATTCCGAGTTCTTTTTCTACCTACTCCCCCCCGCCGCCGCCGGAACCGGAGCCGCAGCATTTGGTGGAAGTGTTTCATGACCGTCCCATTTCTTATTCGCCTCCTCGAGAACTCTCTCAGAGAGCCACTGGTTTACGTTCTCACGCCATTCGCTTTCCCAATGGCTTGGGCGAATGCGGTCCTTCTTCCTCGGCGCTTGCTCCGTGCTTGCATCGCCCCGATGCTGCAAAAGAACTTGAAATTTGTGATTTGAAGAGGGAGCTAGGGCGCGTCTCAAAGCAACTTAAGGACTTGGAACAAGAGTGTGTTGAACTCAGGAAGAAAAGAGACAAAAAGGAGGAGCAGCTTAAAGTTGTCTCTTCCAATAAGGATGAGCAATATATTGGCCGTCGTGTTTCAGAAAGTATAGATTTGAGAGTGGCAGGGAAAGATGGTGGACGTACTGGCATGAAGAGTGAAGATATAGCTGGTGACCTTGGTGGCCCTCACACTGTTACCTCTAGGAGTAAAGGCAATGAACAGGGAGAAAAAGCCCATAGTTCTGTTGGAGAGAGAGCCAACGATGATCTACCTGCTTTTGACAAGCTCTCAAAGAAGTTGAAAGTCTTCTGGGTCCCTGAAAGTGACTCTAAGATGGGACAAAATATGGTTTCAGAATTGCTTTTATCATGTGAAACAGATTTTCATGTGCTTTTTCACAGCATTGGGACGGAGTTATCCCATAAATTTTCTGTGGATTCCCTGGCTGGTGATAACTCTTCTGATGTAGCTTTAAAGCAACCTTTGCAGTTTCTTCAGTGTCTGGAAGCTAAAAAAGTATCTAACCTCTACACCACCTTGACTAAGGTAAGTAATGGAATAGTCAAGATGGAGGCTTTGTTTACTCCGTTGCTTGATCTCTGTAATCTTGACAATGTTGCGATAGTTCATAGATCTCTGCATATATTGCATATGTTTCTGAAACGGTTGTTGTGGTTGGAGAGGAAATCAGAAAGAAGGTATGGTGCACTCTACTTTGCAACAAATTGCAATCTGCTCAGGGAAACAGTCATGATTGGGGGACTTGGCTCTAGGAACAATGTTGTGGATTCTCATGGATCACAGAGTGCAGAAGTTGAAGAATTTTCTTTGGTGAACATGGATGAGACATCAAATGGTAGCTGTGCCCCAGCTGGCATGAGCCTCCCTGGTGCTGAATTGCTGTGCAAGAACAGAAACTTGAATAAGAATATAAATTTAGTTCCTCAAATAAACTGGGTAGCTTTCTTTGAGGTGATGCATCAGGTTGCTAAGACACATAGTGCAAAATGTGTGAGAATTGAGGCAGTTTCAGTCATGAATTTCATTCTGATGAGAAATAATACTTATTTGGAGAAGGAGAATGTTTACTTGAGCTCAATTTTCCGTTTATGTCCTTCACTTCCTAGTAATGTTTGCTTTAATTCAGGTCCCACATTTTTTATCACGTTCTGTTCTGGTTGCAAAGAAGCAGAAGCTGCTGATGCTGCAGATGAAAATGTGAGATGTGCAGGAGGTTTCCAGAAATTCAGAACCATCCTTCATGGTTTGGCAGATTGTCTTACATGTTTCGGAAATGGTATTGAGGAGTTGAAACTTCGAAGAAACACCGTTCTTTTGCTCGCCTTTCTATCATCGTCCGGGGTAGCTGGCTTTGAGATTCTCATAAGCAACAAGCTGTATACAGACTCAAATTTCCTCACGTTAATTCTTCAAGCTGTGGCTTCAGAAATCGGACAAGAGAAAACAGTTCCAGAGCCAGTGGAAAATCTTGAGGAAAGGGCGTCGCTGTTGCGGGAAGTGCTTATTCTTCTTAATAGACTTGCATCTCATTCATTATACTCGGCGACGGTCTTGCGAGTGTTAACGAACAGCAGAGATATGGCCAGCCTCACCATTGACGTAACCAACAAGTTGTGCAGAAAAAACAAGAGAAATTGCCAGTTTGACAGCAAGAAAAGAAAGATGAGGGAATCTGAAGTTATGGAGTTAGCCCAGGTATTTAGGAAAAGACTTCTTACATATTTGGGAAATAGCATACTATAA 2184 43.59 MRAEDEGFEDWDADFLDQLIQVEELAISSTANNPIPIPIPIPSSFSTYSPPPPPEPEPQHLVEVFHDRPISYSPPRELSQRATGLRSHAIRFPNGLGECGPSSSALAPCLHRPDAAKELEICDLKRELGRVSKQLKDLEQECVELRKKRDKKEEQLKVVSSNKDEQYIGRRVSESIDLRVAGKDGGRTGMKSEDIAGDLGGPHTVTSRSKGNEQGEKAHSSVGERANDDLPAFDKLSKKLKVFWVPESDSKMGQNMVSELLLSCETDFHVLFHSIGTELSHKFSVDSLAGDNSSDVALKQPLQFLQCLEAKKVSNLYTTLTKVSNGIVKMEALFTPLLDLCNLDNVAIVHRSLHILHMFLKRLLWLERKSERRYGALYFATNCNLLRETVMIGGLGSRNNVVDSHGSQSAEVEEFSLVNMDETSNGSCAPAGMSLPGAELLCKNRNLNKNINLVPQINWVAFFEVMHQVAKTHSAKCVRIEAVSVMNFILMRNNTYLEKENVYLSSIFRLCPSLPSNVCFNSGPTFFITFCSGCKEAEAADAADENVRCAGGFQKFRTILHGLADCLTCFGNGIEELKLRRNTVLLLAFLSSSGVAGFEILISNKLYTDSNFLTLILQAVASEIGQEKTVPEPVENLEERASLLREVLILLNRLASHSLYSATVLRVLTNSRDMASLTIDVTNKLCRKNKRNCQFDSKKRKMRESEVMELAQVFRKRLLTYLGNSIL 727
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 11436895 11445237 - ClCG09G011510.2 Cla09g01078 280498

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g01078 727 MobiDBLite consensus disorder prediction 210 228 - -
Cla09g01078 727 MobiDBLite consensus disorder prediction 181 228 - -
Cla09g01078 727 Coils Coil 634 654 - -
Cla09g01078 727 Coils Coil 128 162 - -
Cla09g01078 727 PANTHER ATR INTERACTING PROTEIN 524 723 IPR044952 GO:0006974
Cla09g01078 727 PANTHER ATR INTERACTING PROTEIN 2 509 IPR044952 GO:0006974
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g01078 - - - csv:101220265 1092.03
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g761 . . Bda06g01239 . . Bpe07g00241 . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0503 Cone12ag0504 . . . . Chy04g00135 . . . . . . . . Bma12g00242 Sed05g0248 . . . . . . . Cpe15g00183 Bhi05g00427 Tan07g2035 Cmetu04g1723 Lac11g2458 Hepe06g1809 . Lcy12g1982 Cla09g01078 Cam09g1135 Cec09g1140 Cco09g1160 . . Cre09g1097 . Csa03g04569 . Cme04g00156
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007127 2 1 0 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 0 1 1 5 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla09g01078 Cla_Chr09 FPKM 74.837952 80.152794 45.793568 47.343899 31.67721 28.598873 30.979513 0.660873 1.152968 0.666596