Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g01083 ATGATGGGGACATCAGTCCTTAACTATAATCATCATTTATTGCCCTCAAAAGATCTACCACAGAGTTCAGATTTGAGTTTGAAGCAGAAGGAGCAGGAATATTTGTACCTTTTGAAGAAATGTAAGAGCTTAGAAGAATTCAAACAAGTTCATGTTCAAATTCTGAAGTTAGGTCTTTTCTGGGATTCTTGCTGCTCAAGCAGTCTGTTGGCTACTTGTGCTCTTTCAGATTGGAACAGTATGGATTATGCCTGCTCCATTTTCCAGCAATTGGATGAACCTACCTCATTTGATTTCAACACAATGATCAGAGGGTATGTTAATAACATGAACTTTGAGAACGCTATATACCTGTATAATGATATGCTTCAAAGAGAAGTTGAACCTGACAACTTCACGTACCCGGCAGTTCTCAAGGCTTGTGCTCGGTCAGCAGCAATCGAGGAAGGAATGCAGATTCATGGTCATGTAATCAAGCTAGGTCTGGAAGATGATGTCTTTGTACAGAATAGCTTAATCAACATGTACGGGAAGTGTTGGAATATTGAAATGTCTTGTGCTATTTTTCAACGTATGGAGCAAAAGAGTGTGGCTTCTTGGAGTGCTATAATTGCAGCTCATGCTAGTGTTGGAATGTGGTGGGAATGTTTGGTGTTGTTTGAGGATATGAGTAGAGAAGGATGTTGGAGGGCTGAGGAAAGCATACTAGTCAGCGTGCTTTCTGCTTGCACTCATTTGGGTGCCCTTAATTTAGGAAGATGTGCCCATGGTTCTTTGTTGAAGAACATCACTGAACTAAATGTTGCAGTTATGACTTCCTTAATGGATATGTATGTGAAATGTGGGTCTTTACAAAAAGGATTATGTCTCTTCAAGAACATGACCAAAAAGAATCAACTATCCTATAGTGTCATAATCTCAGGGCTTGGCTTACATGGACATGGTAGACAAGCTCTAAAAATCTTCTCAGAAATGGTTGAAGAAGGCCTAGAGCCTGATGATGTTATCTATGTCAGTGTTCTTAGTGCTTGTAGTCACTCTGGCCTTGTTGATGAGGGTCTCGATCTTTTCAACAGGATGAAGTTTGAGCACCAGATTGAACCGACAATGCAGCACTATGGTTGCGTGGTAGACCTAAAGGGACGAGCGGGTTTGCTTGAAGAAGCATTTGAGCTTGTCCAAAGTATGCCAATAAAAGCAAATGATGTTGTTTGGCGGAGCCTTCTAAGTGCTTGTAAGATTCATGACAACCTAAAACTTGGTGAGATAGCTGCAGAGAATCTATTCCGATTGTCTTCGCACAGTCCTAGCGATTGCCTAGTTTTGTCTAATATGTATGCGAGAGCTCAACAATGGGAGAATGCAGCTAAGATCAGGACAAAAATGGTCGACGATGGCTTGATCCAAACACCAGGGTATAGCTTGGTGGAGGTGAAAACCAAAGTATACAAATTTGTTTCACAGGATAAATCGAACTGCAAATTGGGTAAAATCTATGAGATGATTCATCAGATGGAATGGCAACTGAGATTTGAAGGCTATATGCCAGATACATCACAAGTTATGCTTGATGTAGATGAAGAAGAAAAGAGGGAGAGATTGAAAGGTCATAGCCAGAAGTTAGCTATAGCTTTTGCTCTCATTCATACATCACAGGGATCTGCAATAAGGATAATTAGAAACCTGAGAATGTGTAATGACTGTCATACATACACTAAACTTATTTCAATGATCTATGGAAGAGAAATTACTGTAAGAGACCGGAATCGGTTCCACCATTTTAAAGATGGAAATTGCTCTTGTAGGGATTACTGGTGA 1818 40.21 MMGTSVLNYNHHLLPSKDLPQSSDLSLKQKEQEYLYLLKKCKSLEEFKQVHVQILKLGLFWDSCCSSSLLATCALSDWNSMDYACSIFQQLDEPTSFDFNTMIRGYVNNMNFENAIYLYNDMLQREVEPDNFTYPAVLKACARSAAIEEGMQIHGHVIKLGLEDDVFVQNSLINMYGKCWNIEMSCAIFQRMEQKSVASWSAIIAAHASVGMWWECLVLFEDMSREGCWRAEESILVSVLSACTHLGALNLGRCAHGSLLKNITELNVAVMTSLMDMYVKCGSLQKGLCLFKNMTKKNQLSYSVIISGLGLHGHGRQALKIFSEMVEEGLEPDDVIYVSVLSACSHSGLVDEGLDLFNRMKFEHQIEPTMQHYGCVVDLKGRAGLLEEAFELVQSMPIKANDVVWRSLLSACKIHDNLKLGEIAAENLFRLSSHSPSDCLVLSNMYARAQQWENAAKIRTKMVDDGLIQTPGYSLVEVKTKVYKFVSQDKSNCKLGKIYEMIHQMEWQLRFEGYMPDTSQVMLDVDEEEKRERLKGHSQKLAIAFALIHTSQGSAIRIIRNLRMCNDCHTYTKLISMIYGREITVRDRNRFHHFKDGNCSCRDYW 605
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 11503962 11505779 + ClCG09G011550.1 Cla09g01083 280503

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g01083 605 Gene3D Tetratricopeptide repeat domain 267 510 IPR011990 GO:0005515
Cla09g01083 605 TIGRFAM PPR: pentatricopeptide repeat domain 99 130 IPR002885 -
Cla09g01083 605 TIGRFAM PPR: pentatricopeptide repeat domain 335 363 IPR002885 -
Cla09g01083 605 TIGRFAM PPR: pentatricopeptide repeat domain 301 333 IPR002885 -
Cla09g01083 605 Pfam PPR repeat family 298 344 IPR002885 -
Cla09g01083 605 Pfam PPR repeat family 96 143 IPR002885 -
Cla09g01083 605 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 16 591 - -
Cla09g01083 605 PANTHER - 16 591 - -
Cla09g01083 605 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 196 230 IPR002885 -
Cla09g01083 605 Pfam E motif 415 477 IPR046848 -
Cla09g01083 605 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 333 363 IPR002885 -
Cla09g01083 605 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 298 332 IPR002885 -
Cla09g01083 605 Pfam PPR repeat 170 196 IPR002885 -
Cla09g01083 605 Pfam PPR repeat 373 396 IPR002885 -
Cla09g01083 605 Pfam PPR repeat 199 228 IPR002885 -
Cla09g01083 605 Pfam DYW family of nucleic acid deaminases 513 605 IPR032867 GO:0008270
Cla09g01083 605 Gene3D Tetratricopeptide repeat domain 16 146 IPR011990 GO:0005515
Cla09g01083 605 Gene3D Tetratricopeptide repeat domain 147 266 IPR011990 GO:0005515
Cla09g01083 605 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 95 129 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g01083 - - - csv:101215176 1121.3
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla09g01083 Cla-Chr9:11503962 Cla08g01326 Cla-Chr8:26141548 2.51E-168 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g750 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0499 . . . . . Chy04g00133 . . . . Bda09g00761 Bpe08g00802 . . . . . Cmo19g00226 . . . . . Cpe15g00184 Bhi05g00432 . . . Hepe06g1808 . Lcy12g1981 Cla09g01083 . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000117 7 10 4 7 7 7 7 7 6 8 6 5 7 4 3 8 6 7 7 7 7 7 6 6 2 5 4 4 5 11 187
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla09g01083 Cla_Chr09 FPKM 18.189804 21.213053 22.12051 23.246401 15.169764 13.19429 16.056133 52.441536 50.99942 52.690197