Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla09g01088 | ATGGGTGGCAGTGAGATGAATAAATCCACGAAGGAGGAATCCAAGACAACACCTGCCACTACACAGGAACAGTCTCCAAACACAAGCACTGGCACCGTTAATCCTGAATGGTCAGGATTTCAGGCATATTCTCCAATACCTCCACCTGGATATTTGGCAACAAGCCCCCAGGCACACACATATATGTGGGGGGTACAGCCTATTATGCCCCCTTATGGAACCCCTCCACACCCGTATGTTGCAATGTATCCTCATGGTGGCATATATGCTCATCCGCCTATGCCTCCGGGATCATATCCTTACAGTCCTTTTGCCATAGCTTCTCCAAATGGCATTGCTGAGACTTCTGGGAATACTCCAGGCAACATGGAAGGGGAAGGTAAGCCATCTGAGCTGAAAGAAAAATTGCCAATTAAAAGATCGAAAGGAAGTCTGGGAAGTTTAAGCATGATAACTGGGAAGAACAATGAGCTTGGTAAACCATCAGGACCATCTGCTAACGGAGTTTATTCTAAAAGTGCTGAAAGTGAAAGTGAAGGCACAAGTGAAAGAAGTGGTGCTGACTCTGAAAATGATTCACAACTAAAATCTGGTTCTGGGAAAGATTCTTTAGAAGGTTTGGGAATTTTTTTCTATTATGCAGTCAGTGTACCCGGTGGAGGGACTCCTAATGGTTTAATGCATGGTTCTCAGAATGAAGGACATAGTCTTGCGCATCCATTGGTGAACCAAACAATGTCCATGATACCAATTCAAGCTTCTGGAGCTGTTACAGGTCCTGCTACAAATTTGAATATAGGAATGGATTATTGGGGTACCCCAACGACTTCTGCCATCCCTTCATTGTGTGGGAAGGTCCCTTCGGCTCCGGTTCCAGGAGCTGTTGCTGCTGGGTCACGGGACAGCATTCTGTCCCAACCTTGGTTACAGGATGAAAGAGAGCTGAAAAGACAAAGAAGGAAGCAGTCAAACAGAGAATCTGCTCGTAGATCTCGGTTGCGCAAACAGGCTGAATGCGATGAGCTGTCTCAGCGTGCGGAAGCTTTGAAGGAAGAAAATGCGAGTCTTAGATCTGAAGTGGATAGGATTAGGAGTGAGTATGAGCAACTTCTTTCAGAAAATGCCTCTCTCAAGAGGAGGCTTGGAGAAAGTGATGGAAATGAAGATCCAAGATCTGCCAAAGCCAAAGACGGCCAAAATTTGAATAAAGGTCACCATACATCCCGGACCCAACTTGCTAAAGGGTAA | 1248 | 45.75 | MGGSEMNKSTKEESKTTPATTQEQSPNTSTGTVNPEWSGFQAYSPIPPPGYLATSPQAHTYMWGVQPIMPPYGTPPHPYVAMYPHGGIYAHPPMPPGSYPYSPFAIASPNGIAETSGNTPGNMEGEGKPSELKEKLPIKRSKGSLGSLSMITGKNNELGKPSGPSANGVYSKSAESESEGTSERSGADSENDSQLKSGSGKDSLEGLGIFFYYAVSVPGGGTPNGLMHGSQNEGHSLAHPLVNQTMSMIPIQASGAVTGPATNLNIGMDYWGTPTTSAIPSLCGKVPSAPVPGAVAAGSRDSILSQPWLQDERELKRQRRKQSNRESARRSRLRKQAECDELSQRAEALKEENASLRSEVDRIRSEYEQLLSENASLKRRLGESDGNEDPRSAKAKDGQNLNKGHHTSRTQLAKG | 415 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 11569360 | 11582300 | + | ClCG09G011600.2 | Cla09g01088 | 280508 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla09g01088 | 415 | CDD | bZIP_plant_GBF1 | 317 | 367 | IPR045314 | GO:0003700|GO:0006355 | |
| Cla09g01088 | 415 | MobiDBLite | consensus disorder prediction | 112 | 200 | - | - | |
| Cla09g01088 | 415 | SUPERFAMILY | Leucine zipper domain | 315 | 371 | IPR046347 | GO:0003700|GO:0006355 | |
| Cla09g01088 | 415 | MobiDBLite | consensus disorder prediction | 307 | 336 | - | - | |
| Cla09g01088 | 415 | SMART | brlzneu | 312 | 376 | IPR004827 | GO:0003700|GO:0006355 | |
| Cla09g01088 | 415 | MobiDBLite | consensus disorder prediction | 1 | 46 | - | - | |
| Cla09g01088 | 415 | MobiDBLite | consensus disorder prediction | 372 | 415 | - | - | |
| Cla09g01088 | 415 | Pfam | bZIP transcription factor | 312 | 374 | IPR004827 | GO:0003700|GO:0006355 | |
| Cla09g01088 | 415 | PANTHER | BZIP TRANSCRIPTION FACTOR 68 | 1 | 403 | - | - | |
| Cla09g01088 | 415 | Pfam | G-box binding protein MFMR | 1 | 95 | IPR012900 | - | |
| Cla09g01088 | 415 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 314 | 377 | IPR004827 | GO:0003700|GO:0006355 | |
| Cla09g01088 | 415 | PANTHER | G-BOX-BINDING FACTOR 3-RELATED | 1 | 403 | IPR044827 | GO:0003700|GO:0006355|GO:0043565 | |
| Cla09g01088 | 415 | MobiDBLite | consensus disorder prediction | 1 | 39 | - | - | |
| Cla09g01088 | 415 | Pfam | Disordered region downstream of MFMR | 134 | 280 | - | - | |
| Cla09g01088 | 415 | ProSitePatterns | Basic-leucine zipper (bZIP) domain signature. | 319 | 334 | IPR004827 | GO:0003700|GO:0006355 | |
| Cla09g01088 | 415 | Coils | Coil | 325 | 380 | - | - | |
| Cla09g01088 | 415 | MobiDBLite | consensus disorder prediction | 145 | 176 | - | - | |
| Cla09g01088 | 415 | MobiDBLite | consensus disorder prediction | 378 | 403 | - | - | |
| Cla09g01088 | 415 | Gene3D | - | 315 | 369 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cla09g01088 | Cla10g00124 | CCT |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla01g01889 | Cla-Chr1:33695246 | Cla09g01088 | Cla-Chr9:11569360 | 1.71E-63 | dispersed | |
| Cla09g01088 | Cla-Chr9:11569360 | Cla05g02362 | Cla-Chr5:35204935 | 3.24E-12 | dispersed | |
| Cla05g00118 | Cla-Chr5:1148327 | Cla09g01088 | Cla-Chr9:11569360 | 3.31E-44 | transposed | |
| Cla10g01820 | Cla-Chr10:34088031 | Cla09g01088 | Cla-Chr9:11569360 | 7.02E-09 | transposed | |
| Cla10g00124 | Cla-Chr10:1268952 | Cla09g01088 | Cla-Chr9:11569360 | 0 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 61729 | PF16596 | MFMR_assoc | 3.40E-40 | No_clan | Cla | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla09g01088 | K09060 | - | csv:101214217 | 734.947 |