Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g01093 ATGAATATGGAAACAGAGTTAACTAAGGTTCTGCATAATGGCCAAAAGATTGTCGTGGGTTTGAAGAGGAAAAGGGAAAATCAAGGCACGGCACATGCTGGAGCTGGATACAAAGCATTTTTGTCCAAGTTGACCTCATCTAGGAATAGACATGCCAAATCCAAGAGACTCGATGACTGTGAAGTCAGTTGTGGGCCATGCTCAAGGAGATCTTTTCTTAGAAACTATAAAAATTTTAGTAGAAGTGGACTTCCCCAGAGGTTTTTATATTACGAAGATGGGGATTGGGTAGATTACCCTCAGATAACTGTCAAGTTGATTAGGGAACAGTTTCAGATTAAAAATGCGGCAATTGAAGTTGAATTTGATGGTCGTCATTTGCTGCTAGATGCTTTGTACATGATCCAAGTGGAACTGAAAACAGCTATTCAGCAGCACATTGCCTGGATTGACGACAATGGTCGATGTTTCTTTCCAGAATTTTATTCGGATGACAGTGTGATGCATCAGTTCCACCAACATGAGCTGGAAGATGCTTCTGCTGTTGCATTATCAGGCCATACAGGAATGAGAGAGATCAATTTGCATCTTGAAATTGGAATAACTGAAGCAAATAGTTCTCAATCAGAAGAGTATATTGAAGAGTCAAATAGCGATACTAAGGTATCTAATATCAAAGCACAAACTTGTGATATTGGTGGGGATTGGGAAGGCAGTGAAACTAAAAGTCAGAAACCAGTTGCTGAAATGCAGGAGGCTGTTGGAGGAATAAAAGAGATTGATTGTTGTATGGCGCCTCAAAATGAATTAATTCATTCAGCTTTGGATTCGAATGATGTAAAAAACATGTTCTTAACGAGCATGGGATCTCTTAAGAACATTGAAATACTTGGGGTCAAACGCTGGTCTAGTCCTTTAATGCAGGATAGACTGGATCTGTTTCAAAAACAAATAGAGATAACCAAGAAGAGTCGTGGGAATGCCAATGTTCAGCATGGTTGGCTACCTCTGAATAAGGATGTTTTATCTGGTAGCATGCCATATGGGGTCGGTCATTCTGGACTGAAGCTTACATCCTCATATGGTGTTCACCTTTCACCTACAAGCTGCGCAAATCTTAGTGCAAGCTATTGCGATGATGATGAAAAAGGGGTTAGATACATAGCGTTCTGTCATGTCATATTGGGAAATGTGGAAGTTGTCGCTCCTGGATGTGAACCATATCATCCCAGCTCTGTAAACTTTGACAGTGGAGTAGATGACCTTCATAATCCAAGTCAATATTTAGTTTGGAATGTGAATATGAAAAGCCACATTTTCCCAGAGTATGTTGTAAGTTTCAAGATATCATCAAGTCCTCTTGAACGTGGGGTACAGGACCAGTGGCAGTTAAATTGCTCTTCGATTGAATCAGGAATTGTTGTCCATGGTATCATTGCCACTCTTTTTAGGTGTGGACTTGTACCTTTGGATGCTGTCGGGTTTCATGCAACAATTCATAAATTTGGAGCCCTTTTGCAGTCACAGGAGGAGGATTGTGTGTCTTCGCCAGCTCCTGAAAAGAGATGCACGGAAAAGCTTGTCCATGGATCTAGCTCTCTGAAGACTCCAAAGTCCCCTTGGATGCCTTTCTCAATGTTGTTTAATGCCATTTCAAAAGAAGTTTCTCTCAATGACATGAAATTGGTGAATGGTCATTATGGCTTATTTAGAGAAAAGAAGATCAATAGGGACGAATTCATAAGAAGGTTGAGGTCCATTGTTGGGGATCCGTTACTGAGGTCTACACTAACGAGTCTCCAGTGCAAGGTATGTTACGCGTGTGATCGGTATTGCTCAGTTCTTGTATGGTGTAGAGCGTTCTGTTGCTATGCGAAAGACTGGCTTTTGAAGTATGGATCATGTACAGATGGTCAACATTCTATTTTACAGTTTTCTTTTCCATGTGAATGGCTATTTGTTTGA 1965 40.66 MNMETELTKVLHNGQKIVVGLKRKRENQGTAHAGAGYKAFLSKLTSSRNRHAKSKRLDDCEVSCGPCSRRSFLRNYKNFSRSGLPQRFLYYEDGDWVDYPQITVKLIREQFQIKNAAIEVEFDGRHLLLDALYMIQVELKTAIQQHIAWIDDNGRCFFPEFYSDDSVMHQFHQHELEDASAVALSGHTGMREINLHLEIGITEANSSQSEEYIEESNSDTKVSNIKAQTCDIGGDWEGSETKSQKPVAEMQEAVGGIKEIDCCMAPQNELIHSALDSNDVKNMFLTSMGSLKNIEILGVKRWSSPLMQDRLDLFQKQIEITKKSRGNANVQHGWLPLNKDVLSGSMPYGVGHSGLKLTSSYGVHLSPTSCANLSASYCDDDEKGVRYIAFCHVILGNVEVVAPGCEPYHPSSVNFDSGVDDLHNPSQYLVWNVNMKSHIFPEYVVSFKISSSPLERGVQDQWQLNCSSIESGIVVHGIIATLFRCGLVPLDAVGFHATIHKFGALLQSQEEDCVSSPAPEKRCTEKLVHGSSSLKTPKSPWMPFSMLFNAISKEVSLNDMKLVNGHYGLFREKKINRDEFIRRLRSIVGDPLLRSTLTSLQCKVCYACDRYCSVLVWCRAFCCYAKDWLLKYGSCTDGQHSILQFSFPCEWLFV 654
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 11640894 11651118 + ClCG09G011650.2 Cla09g01093 280513

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g01093 654 PANTHER INACTIVE POLY [ADP-RIBOSE] POLYMERASE RCD1-LIKE 6 485 - -
Cla09g01093 654 ProSiteProfiles RST domain profile. 535 606 IPR022003 -
Cla09g01093 654 ProSiteProfiles PARP catalytic domain profile. 248 468 IPR012317 GO:0003950
Cla09g01093 654 SUPERFAMILY ADP-ribosylation 276 448 - -
Cla09g01093 654 PANTHER INACTIVE POLY [ADP-RIBOSE] POLYMERASE SRO4-RELATED 515 605 IPR044964 -
Cla09g01093 654 PANTHER INACTIVE POLY [ADP-RIBOSE] POLYMERASE SRO4-RELATED 6 485 IPR044964 -
Cla09g01093 654 Pfam RCD1-SRO-TAF4 (RST) plant domain 537 601 IPR022003 -
Cla09g01093 654 Gene3D - 268 449 - -
Cla09g01093 654 ProSiteProfiles WWE domain profile. 74 149 IPR004170 -
Cla09g01093 654 PANTHER INACTIVE POLY [ADP-RIBOSE] POLYMERASE RCD1-LIKE 515 605 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g01093 - - - csv:101213014 959.903
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g01194 Cla-Chr8:24862465 Cla09g01093 Cla-Chr9:11640894 2.77E-61 transposed
Cla10g00130 Cla-Chr10:1325581 Cla09g01093 Cla-Chr9:11640894 1.01E-111 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g716 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone12ag0489 . . . . . . Blo03g00881 . . . . Bpe11g00316 . . Sed01g4140 . . . . . . . . Bhi05g00448 Tan07g2008 Cmetu06g2068 Lac11g2449 Hepe06g0991 . Lcy12g1971 Cla09g01093 Cam09g1147 Cec09g1156 Cco09g1172 . . Cre09g1110 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007308 0 2 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 0 1 8 1 0 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla09g01093 Cla_Chr09 FPKM 14.398957 13.192292 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0