Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g01099 ATGTATGGGGATTGCCAAGTGATGACAAGCAATATGGGAGGAAATATGGTTTCCTCTGAATCTCTCTTCTCTTCTCCCATTCAAAACCCTAATTTCAATTTCATGTCCAATTTTCAACATTTTCCTTCCGTTGTTCCTAAGGAAGAAAATGGGTTGATGATGAGAGGAAAAGAAGATATGGAAAGTGGGTCTGGAAGTGAACAACTTGTTGAAGAAAATCAAGGAATCGAAATGGAAAGTAATAATAATAATGATATTATTCAGCAAAATCAAAAGAAAAAACGCTATCATAGACATACCGCTCGCCAGATCCAAGAAATGGAAGCATTATTTAAGGAATGTCCACACCCAGATGACAAGCAAAGGCTAAAACTCAGCCAAGAACTTGGCCTTAAACCTCGCCAAGTCAAATTTTGGTTCCAAAATCGAAGAACCCAAATGAAGGCACAACAAGATAGATCTGATAATGTGATACTTAGGGCAGAAAATGAGAGCTTAAAGAATGAGAATTATAGATTGCAAACTGCCCTAAGAAACATCATATGCCCTAGCTGTGGAGGGCAGGGTATCCTAGGGGAACCAAGCTTGGATGAACAACAGCTTCGCCTTGAAAATGCAAGACTAAGAGATCAGTTGGAACAAGTTTGCTCCTTGACCACAAGATACACTGGGCGCCCAATCCAAGGGATGCCCTCCACAGCTCCTCTTATGCAACCATCTTTGGATTTGGACATGAACATATACTCAAGGCAATACACAGAGGCCATTGTTTCGTCATCTGAAATGATGTCATTGCCCTCGATGCTCCCACCCGAGACCGCCCACTTTCCAGAGGGTGGCCTATTAATTGAGGAGGAAAAAACACTTGCAATGGAGCTTGCTGTTTCATCCATAGCTGAGCTTGTGAAGATGTGTCGCTCGACCGAGCCTCTTTGGGTTCGAGACAGCGAGAGCGGTAAGGAAATTCTAAATGTAGAAGAGCATGGGAGAATGTTTCCATGGCCACTGAACCTCAAACAACACTTGATCAATGAGTTTAGGACAGAAGCCACTCGCGATACCGCCGTTGTTATAATGAATAGCATCACTCTCGTCGATGCCTTTCTCGATGCCAACAAATGGATGGAATTATTTCCTTCCATTGTGGCCAAAGCAAAGACTGTGCAAGTCATTTCATCAAGTGTTTCAGGCCATGCCACTTCTTCCCTTCAGCTGATGTATGCAGAACTTCAGACTCTTTCTCCTCTAGTTCCGACGAGAGAAGCGCATTTTCTCCGGTGCTGCCAACAGAACGCCGACGAAGGAAGCTGGACCGTCGTTGATTTTCCAATCGACAGCTTCCATGACAGTCTGCAGCATTCGTTTCCCAGATATAGGAGAAAGCCCTCTGGCTGCATTATTCAAGACATGCCCAATGGATATTCTAGGGTTACATGGGTGGAGCATGCAGAGATAGAAGAGAAGCCAATCCATCAAATATTCAATAATTTTGTGCATAGTGGAATGGCTTTTGGGGCACATCGTTGGTTGGCTATCTTACAAAGACAGTGTGAGAGAATTGCAAGTCTTATGGCTAGAAATATTTCTGACCTTGGAGTAATACCTTCACCAGAAGCAAGACAGAACCTAATGAAACTCGCACAAAGAATGATTAGAACTTTCTCAGTCAACATAAGCACATCAGGTGGGCAGTCGTGGACGGCGTTATCAGATTCTCCTGACGATACCGTTCGTATAACCACTCGAAAAGTCGTCGAGCCTGGCCAACCCAATGGGGTCATTCTTAGCGCTGTCTCGACCACTTGGCTTCCTTATCCTCACTATCGAGTCTTCGATCTTCTACGAGACGAACGACGTCGGTCTCAGCTGGAGGTTCTTTCCAATGGGAATTCCTTGCATGAGGTTGCTCACATTGCTAATGGCTCCCACCCTGGCAATTGCATCTCTCTTCTTCGTATCAATGTGGCCAGCAACTCCTCCCAGCATGTTGAGCTGATGCTGCAGGAGAGTTGCACTGACCAGTCCGGCAGTCTCGTCATCTACGCGACGATTGACGTCGATTCGATCCAGTTAGCAATGAGTGGAGAAGACCCCTCTTGCATTCCTCTCCTCCCCATAGGGTTTTCCATTGTCCCTGCCATCGGGTCAACCGTCGGCGGACACCCAGCACCGCCACCCGAGGACGGTACCACGAATGCCAACTCCAGCTGCCTCCTTACCGTTGGTTTGCAAGTTCTAGCCAGCACCATCCCGTCGGCGAAGCTCAACTTATCAAGTGTTACTGCCATCAACAACCACCTCTGTAATACGGTGCACCAGATCAACATCGCTCTCGGCAGCCCAGGTCGTCTTGAGAACGGCAATAACGTGGCCGAGCCGAATAATGCACCAACGCCGCCGCCACCGCCGCCCAAGCAATAA 2421 46.76 MYGDCQVMTSNMGGNMVSSESLFSSPIQNPNFNFMSNFQHFPSVVPKEENGLMMRGKEDMESGSGSEQLVEENQGIEMESNNNNDIIQQNQKKKRYHRHTARQIQEMEALFKECPHPDDKQRLKLSQELGLKPRQVKFWFQNRRTQMKAQQDRSDNVILRAENESLKNENYRLQTALRNIICPSCGGQGILGEPSLDEQQLRLENARLRDQLEQVCSLTTRYTGRPIQGMPSTAPLMQPSLDLDMNIYSRQYTEAIVSSSEMMSLPSMLPPETAHFPEGGLLIEEEKTLAMELAVSSIAELVKMCRSTEPLWVRDSESGKEILNVEEHGRMFPWPLNLKQHLINEFRTEATRDTAVVIMNSITLVDAFLDANKWMELFPSIVAKAKTVQVISSSVSGHATSSLQLMYAELQTLSPLVPTREAHFLRCCQQNADEGSWTVVDFPIDSFHDSLQHSFPRYRRKPSGCIIQDMPNGYSRVTWVEHAEIEEKPIHQIFNNFVHSGMAFGAHRWLAILQRQCERIASLMARNISDLGVIPSPEARQNLMKLAQRMIRTFSVNISTSGGQSWTALSDSPDDTVRITTRKVVEPGQPNGVILSAVSTTWLPYPHYRVFDLLRDERRRSQLEVLSNGNSLHEVAHIANGSHPGNCISLLRINVASNSSQHVELMLQESCTDQSGSLVIYATIDVDSIQLAMSGEDPSCIPLLPIGFSIVPAIGSTVGGHPAPPPEDGTTNANSSCLLTVGLQVLASTIPSAKLNLSSVTAINNHLCNTVHQINIALGSPGRLENGNNVAEPNNAPTPPPPPPKQ 806
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 11839186 11847040 - ClCG09G011700.2 Cla09g01099 280519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g01099 806 ProSiteProfiles 'Homeobox' domain profile. 90 150 IPR001356 GO:0003677
Cla09g01099 806 SUPERFAMILY Bet v1-like 285 521 - -
Cla09g01099 806 CDD START_ArGLABRA2_like 287 518 - -
Cla09g01099 806 Gene3D - 329 517 IPR023393 -
Cla09g01099 806 ProSitePatterns 'Homeobox' domain signature. 125 148 IPR017970 GO:0000981|GO:0006355
Cla09g01099 806 SMART HOX_1 91 154 IPR001356 GO:0003677
Cla09g01099 806 ProSiteProfiles START domain profile. 283 522 IPR002913 GO:0008289
Cla09g01099 806 Pfam START domain 293 519 IPR002913 GO:0008289
Cla09g01099 806 SMART START_1 292 519 IPR002913 GO:0008289
Cla09g01099 806 Gene3D - 78 161 - -
Cla09g01099 806 CDD homeodomain 93 151 IPR001356 GO:0003677
Cla09g01099 806 Pfam Homeodomain 93 148 IPR001356 GO:0003677
Cla09g01099 806 SUPERFAMILY Bet v1-like 556 774 - -
Cla09g01099 806 MobiDBLite consensus disorder prediction 785 806 - -
Cla09g01099 806 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 48 784 IPR042160 -
Cla09g01099 806 SUPERFAMILY Homeodomain-like 81 151 IPR009057 -
Cla09g01099 806 PANTHER - 48 784 - -
Cla09g01099 806 Coils Coil 149 169 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00193 Cla-Chr5:1738233 Cla09g01099 Cla-Chr9:11839186 0 dispersed
Cla05g00862 Cla-Chr5:8530092 Cla09g01099 Cla-Chr9:11839186 0 dispersed
Cla05g01141 Cla-Chr5:12124146 Cla09g01099 Cla-Chr9:11839186 2.02E-179 dispersed
Cla09g01099 Cla-Chr9:11839186 Cla02g00833 Cla-Chr2:11320437 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61733 PF01852 START 6.40E-43 CL0209 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g01099 - - csv:101212772 1493.02