Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g01104 ATGAGAAACCATGGGAATACAGTTTCATATGATCATGAAGAAGAAAATGAAGATGAAGTTAGTATGAAGAAGAGGAAGAATGATGAAGAAGAAGAAGAAGATGATGGGAAGAAGAAGAAGAAGAAGAAGAAAGAGCAGCAAAATAAAGTTGCTTTTTATAAACTCTTTGCTTTTGCTGATTTTTATGATTATTTTCTCATGAGTTTTGGTTCTATTGGAGCTTGTATCCATGGTGCTTCTGTTCCTGTCTTCTTCATTTTCTTTGGAAAACTCATTAATATCATTGGCATGGCTTATCTTTTCCCTGAAGATGCTGCTCCCAAAGTTGCTAAGTACTCTTTGGATTTTCTATATCTCAGTGTGGTTATACTATTTTCATCATGGGCAGAGGTGGCTTGTTGGATGCATAGTGGAGAGAGGCAAGCAGCAAAGATGAGAATGGCTTATTTAAAATCAATGTTAAATCAAGACATTAGCCTTTTTGACACTGAAGCTTCAACTGGTGAAGTCATTGCTGCTATTACTAGTGACATTGTTATTGTTCAAGATGCCATTTCTGAGAAAGTGTTTGATGAAATGCCTGAGAAGTTTTTGTGGGTTCTGCAGGTAGGGAACTTTTTGCATTATATAAGCCGGTTTATATCAGGGTTTATTATCGGATTTGTGAGGGTATGGCAAATCAGTCTTGTCACATTATCTATTGTCCCTTTGATTGCCCTTGCTGGTGGTCTCTATGCATTTGTCACCATTGGTCTTATTGCCAAAGTAAGAAAATCTTATGTCAAGGCTGGTGAGATTGCTGAAGAGATTTTAGGAAATGTAAGAACAGTTCAAGCCTTTGCTGGGGAAGAAAGAGCAGTAAATTTATACAAAGGAGCTCTCAAGAATACCTACAAGTATGGTAGAAAAGCAGGGCTGGCTAAGGGACTGGGCCTGGGATCAATGCATTGTGTCCTTTTCTTGTCATGGGCTCTGCTAGTTTGGTTTACCAGCATTGTTGTCCACAAGGGCATTGCCAATGGTGGAGACTCCTTCACCACAATGCTTAATGTTGTCATTTCTGGCTTGTCACTTGGGCAGGCCGCACCAGACATTTCTGCCTTTGTTCGAGCAAAGGCAGCGGCATATCCTATTTTTCAGATGATAGAGAGGAACACAGTTAGCAAAAGCAGCTCCAAAACTGGCCGGAAACTGAATAAGCTTGATGGTCATATTCAATTCAAGGATGTTAATTTCAGCTACCCATCTCGTTTGGATGTAATTATATTTAATAAGTTATCTCTTGATATTCCTGCGGGCAAGATTGTAGCTCTTGTGGGAGGAAGTGGATCAGGAAAGAGCACAGTGATATCTTTGATTGAACGATTCTATGAACCCCTTTCTGGAGAGATTCTATTGGATGGTAATAACATCAAGGAGCTGGATCTCAAGTGGCTAAGGCAGCAAATTGGTTTGGTCAATCAAGAGCCTGCCCTCTTTGCTACAAGCATTAGGGAGAACATTCTATATGGAAAAGATGATGCTACCCTTGAGGACATAACGCGTGCAGCCAAACTTTCTGAGGCTTTATCATTTATAAACAATCTCCCTGAAAGATTTGAAACTCAGGTTGGTGAGAGAGGGGTCCAATTATCAGGGGGACAAAAACAAAGGATTGCAATATCTCGTGCAATCGTTAAAAATCCATCAATCTTGTTGCTGGATGAGGCAACAAGTGCACTAGATGCAGAATCTGAAAAGAGTGTACAAGAGGCACTCGATCGCGTCATGGTTGGTCGAACGACTGTAGTGGTGGCTCATCGTTTATCTACCATACGGAATGCAGATGTGATTGCTGTCGTTCAAGAAGGAAAGATAGTTGAAACCGGAAGCCATGATGAGCTCATTTCAAAGCCGGACAGTGTCTATGCATCACTTGTCCAGTTCCAAGAAACATCATCTCTGCAACACCATCCCTCGATTGGGCAGTTGGGTCGACCACCTAGTATAAAGTACTCTCGAGAATTATCTCGCACTACAACGAGCTTTGGTGCAAGTTTTCGCTCCGAGAAAGAATCTCTTGGACGGATTGGAGTTGATGGAATGGAAATGGAGAAACCAAAGCATGTTTCAGCAAGAAGACTTTACTCCATGGTTGGACCGGATTGGATGTATGGCATTGTCGGCGTCATTGGAGCATTCGTTACAGGATCCCAGATGCCCCTTTTTGCTCTTGGGGTCTCTCAGGCTCTTGTTGCATTTTACATGGACTGGAATACAACTCAACATGAGATCAAGAAAATTTCATTGCTTTTCTGTGGCGGTGCGGTTTTAACTGTCATTTTTCATGCAGTTGAGCATCTTTGTTTTGGAATTATGGGAGAGCGACTTACTCTTCGAGTTCGAGAAAAGATGTTCCATGCTATTCTGAGAAACGAGATAGGATGGTTCGATGATATGAACAACACAAGTTCTATGCTTTCATCACGTCTAGAAACTGATGCAACTTTATTACGAACTATTGTTGTCGACCGCTCTACAATTCTTCTGCAGAATCTAGCTTTGGTCGTTGCATCGTTCATCATTGCTTTCATTTTGAATTGGAGAATCACTCTAGTTGTCCTGGCCACTTATCCATTGATCATTAGCGGTCACATTAGCGAGAAACTTTTTATGCAAGGCTACGGTGGAAATTTGAGCAAAGCATACCTGAAAGCCAATACACTGGCCGGTGAGGCAGTTGGCAACATTAGGACTGTTGCTGCATTTTGTTCTGAGCAGAAGGTTCTTGATCTATATGCTAAGGAGCTCGTTGAGCCCTCGAGACGTTCGCTTAAACGTGGACAGATTGCTGGAATATTTTATGGTGTCTCCCAGTTCTTCATCTTTTCATCTTACGGTCTGGCCTTGTGGTACGGTTCGGTCTTGATGGGACAGGGGCTTGCTAGCTTCAAATCTGTTATGAAATCATTCATGGTTTTGATAGTAACTGCCTTAGCAATGGGTGAAACTTTGGCATTGGCCCCTGATCTTTTAAAGGGAAACCAGATGGTGGCATCCGTGTTTGAGGTGATGGATCGACAGACAGAGGTGTCGGGTGATGTTGGTGAAGAGCTAAATGTGGTGGAGGGTACCATTGAGCTGAGGAGTGTTGAGTTCAGCTATCCATCAAGACCAGATGTTTTGATCTTCAAAGATTTCAATCTTAAAGTGAGAGCAGGCAAGAGTATAGCCTTAGTTGGGCAAAGCGGTTCGGGGAAAAGCTCGGTTCTAGCTCTTATTCTGCGATTTTACGATCCAATTGCTGGGAAGGTGATGATTGATGGAAAAGATATTAAAAAACTGAAGCTCAAATCTCTCAGAAAGCACATCGGCCTCGTCCAACAGGAACCGGCTCTTTTTGCCACGTCAATTTACGAGAACATTCTTTATGGGAAAGAAGGAGCTTCAGAAGCCGAAGTATTCGAAGCAGCGAAACTCGCCAATGCTCATAACTTCATCAGTGCTCTTCCTGAAGGCTACTCAACAAAAGTTGGGGAAAGAGGGATCCAACTTTCGGGTGGCCAACGACAGAGGATCGCCATTGCAAGAGCAGTCCTGAAGAACCCGGAAATACTACTACTAGACGAAGCTACGAGTGCTCTCGATGTCGAATCGGAACGTGTGGTTCAGCAAGCCTTAGACAGATTGATGATGAACAGAACAACTGTGGTGGTTGCACATAGGCTTTCTACCATTAAAAACTGTGACCAAATCTCAGTGATTCAAGATGGGAAGATTGTAGAACAAGGAACTCATTCAAGCCTTTCCGACAACAAAAATGGAGCTTATTACAAGTTAATCAACATCCAACAACAGCAACAAAGACAGTGA 3852 42.39 MRNHGNTVSYDHEEENEDEVSMKKRKNDEEEEEDDGKKKKKKKKEQQNKVAFYKLFAFADFYDYFLMSFGSIGACIHGASVPVFFIFFGKLINIIGMAYLFPEDAAPKVAKYSLDFLYLSVVILFSSWAEVACWMHSGERQAAKMRMAYLKSMLNQDISLFDTEASTGEVIAAITSDIVIVQDAISEKVFDEMPEKFLWVLQVGNFLHYISRFISGFIIGFVRVWQISLVTLSIVPLIALAGGLYAFVTIGLIAKVRKSYVKAGEIAEEILGNVRTVQAFAGEERAVNLYKGALKNTYKYGRKAGLAKGLGLGSMHCVLFLSWALLVWFTSIVVHKGIANGGDSFTTMLNVVISGLSLGQAAPDISAFVRAKAAAYPIFQMIERNTVSKSSSKTGRKLNKLDGHIQFKDVNFSYPSRLDVIIFNKLSLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKELDLKWLRQQIGLVNQEPALFATSIRENILYGKDDATLEDITRAAKLSEALSFINNLPERFETQVGERGVQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESEKSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQEGKIVETGSHDELISKPDSVYASLVQFQETSSLQHHPSIGQLGRPPSIKYSRELSRTTTSFGASFRSEKESLGRIGVDGMEMEKPKHVSARRLYSMVGPDWMYGIVGVIGAFVTGSQMPLFALGVSQALVAFYMDWNTTQHEIKKISLLFCGGAVLTVIFHAVEHLCFGIMGERLTLRVREKMFHAILRNEIGWFDDMNNTSSMLSSRLETDATLLRTIVVDRSTILLQNLALVVASFIIAFILNWRITLVVLATYPLIISGHISEKLFMQGYGGNLSKAYLKANTLAGEAVGNIRTVAAFCSEQKVLDLYAKELVEPSRRSLKRGQIAGIFYGVSQFFIFSSYGLALWYGSVLMGQGLASFKSVMKSFMVLIVTALAMGETLALAPDLLKGNQMVASVFEVMDRQTEVSGDVGEELNVVEGTIELRSVEFSYPSRPDVLIFKDFNLKVRAGKSIALVGQSGSGKSSVLALILRFYDPIAGKVMIDGKDIKKLKLKSLRKHIGLVQQEPALFATSIYENILYGKEGASEAEVFEAAKLANAHNFISALPEGYSTKVGERGIQLSGGQRQRIAIARAVLKNPEILLLDEATSALDVESERVVQQALDRLMMNRTTVVVAHRLSTIKNCDQISVIQDGKIVEQGTHSSLSDNKNGAYYKLINIQQQQQRQ 1283
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 11940744 11949590 + ClCG09G011750.1 Cla09g01104 280524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g01104 1283 ProSitePatterns ABC transporters family signature. 1178 1192 IPR017871 GO:0005524
Cla09g01104 1283 CDD ABC_MTABC3_MDL1_MDL2 1039 1274 - -
Cla09g01104 1283 Coils Coil 12 49 - -
Cla09g01104 1283 Gene3D ABC transporter type 1, transmembrane domain 9 106 IPR036640 GO:0005524|GO:0016021
Cla09g01104 1283 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 48 1278 IPR039421 -
Cla09g01104 1283 SMART AAA_5 1066 1238 IPR003593 -
Cla09g01104 1283 SMART AAA_5 432 624 IPR003593 -
Cla09g01104 1283 SUPERFAMILY ABC transporter transmembrane region 55 375 IPR036640 GO:0005524|GO:0016021
Cla09g01104 1283 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 397 643 IPR027417 -
Cla09g01104 1283 Pfam ABC transporter 424 572 IPR003439 GO:0005524
Cla09g01104 1283 CDD ABC_6TM_Pgp_ABCB1_D1_like 67 378 - -
Cla09g01104 1283 MobiDBLite consensus disorder prediction 1 41 - -
Cla09g01104 1283 SUPERFAMILY ABC transporter transmembrane region 698 1020 IPR036640 GO:0005524|GO:0016021
Cla09g01104 1283 Gene3D ABC transporter type 1, transmembrane domain 116 1008 IPR036640 GO:0005524|GO:0016021
Cla09g01104 1283 Gene3D - 1030 1283 IPR027417 -
Cla09g01104 1283 CDD ABC_MTABC3_MDL1_MDL2 405 643 - -
Cla09g01104 1283 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 720 1006 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cla09g01104 1283 Gene3D - 403 656 IPR027417 -
Cla09g01104 1283 Pfam ABC transporter 1058 1206 IPR003439 GO:0005524
Cla09g01104 1283 CDD ABC_6TM_Pgp_ABCB1_D2_like 709 1024 - -
Cla09g01104 1283 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1039 1275 IPR003439 GO:0005524
Cla09g01104 1283 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 405 641 IPR003439 GO:0005524
Cla09g01104 1283 PANTHER ABC TRANSPORTER B FAMILY MEMBER 2 48 1278 - -
Cla09g01104 1283 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1033 1277 IPR027417 -
Cla09g01104 1283 ProSitePatterns ABC transporters family signature. 544 558 IPR017871 GO:0005524
Cla09g01104 1283 Pfam ABC transporter transmembrane region 72 353 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cla09g01104 1283 Pfam ABC transporter transmembrane region 720 992 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cla09g01104 1283 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 69 370 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla09g01104 Cla-Chr9:11940744 Cla09g01789 Cla-Chr9:35331134 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g01104 K05658 - csv:101219304 2256.1