Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla09g01104 | ATGAGAAACCATGGGAATACAGTTTCATATGATCATGAAGAAGAAAATGAAGATGAAGTTAGTATGAAGAAGAGGAAGAATGATGAAGAAGAAGAAGAAGATGATGGGAAGAAGAAGAAGAAGAAGAAGAAAGAGCAGCAAAATAAAGTTGCTTTTTATAAACTCTTTGCTTTTGCTGATTTTTATGATTATTTTCTCATGAGTTTTGGTTCTATTGGAGCTTGTATCCATGGTGCTTCTGTTCCTGTCTTCTTCATTTTCTTTGGAAAACTCATTAATATCATTGGCATGGCTTATCTTTTCCCTGAAGATGCTGCTCCCAAAGTTGCTAAGTACTCTTTGGATTTTCTATATCTCAGTGTGGTTATACTATTTTCATCATGGGCAGAGGTGGCTTGTTGGATGCATAGTGGAGAGAGGCAAGCAGCAAAGATGAGAATGGCTTATTTAAAATCAATGTTAAATCAAGACATTAGCCTTTTTGACACTGAAGCTTCAACTGGTGAAGTCATTGCTGCTATTACTAGTGACATTGTTATTGTTCAAGATGCCATTTCTGAGAAAGTGTTTGATGAAATGCCTGAGAAGTTTTTGTGGGTTCTGCAGGTAGGGAACTTTTTGCATTATATAAGCCGGTTTATATCAGGGTTTATTATCGGATTTGTGAGGGTATGGCAAATCAGTCTTGTCACATTATCTATTGTCCCTTTGATTGCCCTTGCTGGTGGTCTCTATGCATTTGTCACCATTGGTCTTATTGCCAAAGTAAGAAAATCTTATGTCAAGGCTGGTGAGATTGCTGAAGAGATTTTAGGAAATGTAAGAACAGTTCAAGCCTTTGCTGGGGAAGAAAGAGCAGTAAATTTATACAAAGGAGCTCTCAAGAATACCTACAAGTATGGTAGAAAAGCAGGGCTGGCTAAGGGACTGGGCCTGGGATCAATGCATTGTGTCCTTTTCTTGTCATGGGCTCTGCTAGTTTGGTTTACCAGCATTGTTGTCCACAAGGGCATTGCCAATGGTGGAGACTCCTTCACCACAATGCTTAATGTTGTCATTTCTGGCTTGTCACTTGGGCAGGCCGCACCAGACATTTCTGCCTTTGTTCGAGCAAAGGCAGCGGCATATCCTATTTTTCAGATGATAGAGAGGAACACAGTTAGCAAAAGCAGCTCCAAAACTGGCCGGAAACTGAATAAGCTTGATGGTCATATTCAATTCAAGGATGTTAATTTCAGCTACCCATCTCGTTTGGATGTAATTATATTTAATAAGTTATCTCTTGATATTCCTGCGGGCAAGATTGTAGCTCTTGTGGGAGGAAGTGGATCAGGAAAGAGCACAGTGATATCTTTGATTGAACGATTCTATGAACCCCTTTCTGGAGAGATTCTATTGGATGGTAATAACATCAAGGAGCTGGATCTCAAGTGGCTAAGGCAGCAAATTGGTTTGGTCAATCAAGAGCCTGCCCTCTTTGCTACAAGCATTAGGGAGAACATTCTATATGGAAAAGATGATGCTACCCTTGAGGACATAACGCGTGCAGCCAAACTTTCTGAGGCTTTATCATTTATAAACAATCTCCCTGAAAGATTTGAAACTCAGGTTGGTGAGAGAGGGGTCCAATTATCAGGGGGACAAAAACAAAGGATTGCAATATCTCGTGCAATCGTTAAAAATCCATCAATCTTGTTGCTGGATGAGGCAACAAGTGCACTAGATGCAGAATCTGAAAAGAGTGTACAAGAGGCACTCGATCGCGTCATGGTTGGTCGAACGACTGTAGTGGTGGCTCATCGTTTATCTACCATACGGAATGCAGATGTGATTGCTGTCGTTCAAGAAGGAAAGATAGTTGAAACCGGAAGCCATGATGAGCTCATTTCAAAGCCGGACAGTGTCTATGCATCACTTGTCCAGTTCCAAGAAACATCATCTCTGCAACACCATCCCTCGATTGGGCAGTTGGGTCGACCACCTAGTATAAAGTACTCTCGAGAATTATCTCGCACTACAACGAGCTTTGGTGCAAGTTTTCGCTCCGAGAAAGAATCTCTTGGACGGATTGGAGTTGATGGAATGGAAATGGAGAAACCAAAGCATGTTTCAGCAAGAAGACTTTACTCCATGGTTGGACCGGATTGGATGTATGGCATTGTCGGCGTCATTGGAGCATTCGTTACAGGATCCCAGATGCCCCTTTTTGCTCTTGGGGTCTCTCAGGCTCTTGTTGCATTTTACATGGACTGGAATACAACTCAACATGAGATCAAGAAAATTTCATTGCTTTTCTGTGGCGGTGCGGTTTTAACTGTCATTTTTCATGCAGTTGAGCATCTTTGTTTTGGAATTATGGGAGAGCGACTTACTCTTCGAGTTCGAGAAAAGATGTTCCATGCTATTCTGAGAAACGAGATAGGATGGTTCGATGATATGAACAACACAAGTTCTATGCTTTCATCACGTCTAGAAACTGATGCAACTTTATTACGAACTATTGTTGTCGACCGCTCTACAATTCTTCTGCAGAATCTAGCTTTGGTCGTTGCATCGTTCATCATTGCTTTCATTTTGAATTGGAGAATCACTCTAGTTGTCCTGGCCACTTATCCATTGATCATTAGCGGTCACATTAGCGAGAAACTTTTTATGCAAGGCTACGGTGGAAATTTGAGCAAAGCATACCTGAAAGCCAATACACTGGCCGGTGAGGCAGTTGGCAACATTAGGACTGTTGCTGCATTTTGTTCTGAGCAGAAGGTTCTTGATCTATATGCTAAGGAGCTCGTTGAGCCCTCGAGACGTTCGCTTAAACGTGGACAGATTGCTGGAATATTTTATGGTGTCTCCCAGTTCTTCATCTTTTCATCTTACGGTCTGGCCTTGTGGTACGGTTCGGTCTTGATGGGACAGGGGCTTGCTAGCTTCAAATCTGTTATGAAATCATTCATGGTTTTGATAGTAACTGCCTTAGCAATGGGTGAAACTTTGGCATTGGCCCCTGATCTTTTAAAGGGAAACCAGATGGTGGCATCCGTGTTTGAGGTGATGGATCGACAGACAGAGGTGTCGGGTGATGTTGGTGAAGAGCTAAATGTGGTGGAGGGTACCATTGAGCTGAGGAGTGTTGAGTTCAGCTATCCATCAAGACCAGATGTTTTGATCTTCAAAGATTTCAATCTTAAAGTGAGAGCAGGCAAGAGTATAGCCTTAGTTGGGCAAAGCGGTTCGGGGAAAAGCTCGGTTCTAGCTCTTATTCTGCGATTTTACGATCCAATTGCTGGGAAGGTGATGATTGATGGAAAAGATATTAAAAAACTGAAGCTCAAATCTCTCAGAAAGCACATCGGCCTCGTCCAACAGGAACCGGCTCTTTTTGCCACGTCAATTTACGAGAACATTCTTTATGGGAAAGAAGGAGCTTCAGAAGCCGAAGTATTCGAAGCAGCGAAACTCGCCAATGCTCATAACTTCATCAGTGCTCTTCCTGAAGGCTACTCAACAAAAGTTGGGGAAAGAGGGATCCAACTTTCGGGTGGCCAACGACAGAGGATCGCCATTGCAAGAGCAGTCCTGAAGAACCCGGAAATACTACTACTAGACGAAGCTACGAGTGCTCTCGATGTCGAATCGGAACGTGTGGTTCAGCAAGCCTTAGACAGATTGATGATGAACAGAACAACTGTGGTGGTTGCACATAGGCTTTCTACCATTAAAAACTGTGACCAAATCTCAGTGATTCAAGATGGGAAGATTGTAGAACAAGGAACTCATTCAAGCCTTTCCGACAACAAAAATGGAGCTTATTACAAGTTAATCAACATCCAACAACAGCAACAAAGACAGTGA | 3852 | 42.39 | MRNHGNTVSYDHEEENEDEVSMKKRKNDEEEEEDDGKKKKKKKKEQQNKVAFYKLFAFADFYDYFLMSFGSIGACIHGASVPVFFIFFGKLINIIGMAYLFPEDAAPKVAKYSLDFLYLSVVILFSSWAEVACWMHSGERQAAKMRMAYLKSMLNQDISLFDTEASTGEVIAAITSDIVIVQDAISEKVFDEMPEKFLWVLQVGNFLHYISRFISGFIIGFVRVWQISLVTLSIVPLIALAGGLYAFVTIGLIAKVRKSYVKAGEIAEEILGNVRTVQAFAGEERAVNLYKGALKNTYKYGRKAGLAKGLGLGSMHCVLFLSWALLVWFTSIVVHKGIANGGDSFTTMLNVVISGLSLGQAAPDISAFVRAKAAAYPIFQMIERNTVSKSSSKTGRKLNKLDGHIQFKDVNFSYPSRLDVIIFNKLSLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKELDLKWLRQQIGLVNQEPALFATSIRENILYGKDDATLEDITRAAKLSEALSFINNLPERFETQVGERGVQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESEKSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQEGKIVETGSHDELISKPDSVYASLVQFQETSSLQHHPSIGQLGRPPSIKYSRELSRTTTSFGASFRSEKESLGRIGVDGMEMEKPKHVSARRLYSMVGPDWMYGIVGVIGAFVTGSQMPLFALGVSQALVAFYMDWNTTQHEIKKISLLFCGGAVLTVIFHAVEHLCFGIMGERLTLRVREKMFHAILRNEIGWFDDMNNTSSMLSSRLETDATLLRTIVVDRSTILLQNLALVVASFIIAFILNWRITLVVLATYPLIISGHISEKLFMQGYGGNLSKAYLKANTLAGEAVGNIRTVAAFCSEQKVLDLYAKELVEPSRRSLKRGQIAGIFYGVSQFFIFSSYGLALWYGSVLMGQGLASFKSVMKSFMVLIVTALAMGETLALAPDLLKGNQMVASVFEVMDRQTEVSGDVGEELNVVEGTIELRSVEFSYPSRPDVLIFKDFNLKVRAGKSIALVGQSGSGKSSVLALILRFYDPIAGKVMIDGKDIKKLKLKSLRKHIGLVQQEPALFATSIYENILYGKEGASEAEVFEAAKLANAHNFISALPEGYSTKVGERGIQLSGGQRQRIAIARAVLKNPEILLLDEATSALDVESERVVQQALDRLMMNRTTVVVAHRLSTIKNCDQISVIQDGKIVEQGTHSSLSDNKNGAYYKLINIQQQQQRQ | 1283 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 11940744 | 11949590 | + | ClCG09G011750.1 | Cla09g01104 | 280524 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla09g01104 | 1283 | ProSitePatterns | ABC transporters family signature. | 1178 | 1192 | IPR017871 | GO:0005524 | |
Cla09g01104 | 1283 | CDD | ABC_MTABC3_MDL1_MDL2 | 1039 | 1274 | - | - | |
Cla09g01104 | 1283 | Coils | Coil | 12 | 49 | - | - | |
Cla09g01104 | 1283 | Gene3D | ABC transporter type 1, transmembrane domain | 9 | 106 | IPR036640 | GO:0005524|GO:0016021 | |
Cla09g01104 | 1283 | PANTHER | ATP-BINDING CASSETTE SUB-FAMILY B | 48 | 1278 | IPR039421 | - | |
Cla09g01104 | 1283 | SMART | AAA_5 | 1066 | 1238 | IPR003593 | - | |
Cla09g01104 | 1283 | SMART | AAA_5 | 432 | 624 | IPR003593 | - | |
Cla09g01104 | 1283 | SUPERFAMILY | ABC transporter transmembrane region | 55 | 375 | IPR036640 | GO:0005524|GO:0016021 | |
Cla09g01104 | 1283 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 397 | 643 | IPR027417 | - | |
Cla09g01104 | 1283 | Pfam | ABC transporter | 424 | 572 | IPR003439 | GO:0005524 | |
Cla09g01104 | 1283 | CDD | ABC_6TM_Pgp_ABCB1_D1_like | 67 | 378 | - | - | |
Cla09g01104 | 1283 | MobiDBLite | consensus disorder prediction | 1 | 41 | - | - | |
Cla09g01104 | 1283 | SUPERFAMILY | ABC transporter transmembrane region | 698 | 1020 | IPR036640 | GO:0005524|GO:0016021 | |
Cla09g01104 | 1283 | Gene3D | ABC transporter type 1, transmembrane domain | 116 | 1008 | IPR036640 | GO:0005524|GO:0016021 | |
Cla09g01104 | 1283 | Gene3D | - | 1030 | 1283 | IPR027417 | - | |
Cla09g01104 | 1283 | CDD | ABC_MTABC3_MDL1_MDL2 | 405 | 643 | - | - | |
Cla09g01104 | 1283 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 720 | 1006 | IPR011527 | GO:0005524|GO:0016021|GO:0055085|GO:0140359 | |
Cla09g01104 | 1283 | Gene3D | - | 403 | 656 | IPR027417 | - | |
Cla09g01104 | 1283 | Pfam | ABC transporter | 1058 | 1206 | IPR003439 | GO:0005524 | |
Cla09g01104 | 1283 | CDD | ABC_6TM_Pgp_ABCB1_D2_like | 709 | 1024 | - | - | |
Cla09g01104 | 1283 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 1039 | 1275 | IPR003439 | GO:0005524 | |
Cla09g01104 | 1283 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 405 | 641 | IPR003439 | GO:0005524 | |
Cla09g01104 | 1283 | PANTHER | ABC TRANSPORTER B FAMILY MEMBER 2 | 48 | 1278 | - | - | |
Cla09g01104 | 1283 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 1033 | 1277 | IPR027417 | - | |
Cla09g01104 | 1283 | ProSitePatterns | ABC transporters family signature. | 544 | 558 | IPR017871 | GO:0005524 | |
Cla09g01104 | 1283 | Pfam | ABC transporter transmembrane region | 72 | 353 | IPR011527 | GO:0005524|GO:0016021|GO:0055085|GO:0140359 | |
Cla09g01104 | 1283 | Pfam | ABC transporter transmembrane region | 720 | 992 | IPR011527 | GO:0005524|GO:0016021|GO:0055085|GO:0140359 | |
Cla09g01104 | 1283 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 69 | 370 | IPR011527 | GO:0005524|GO:0016021|GO:0055085|GO:0140359 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla09g01104 | Cla-Chr9:11940744 | Cla09g01789 | Cla-Chr9:35331134 | 0 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla09g01104 | K05658 | - | csv:101219304 | 2256.1 |