Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g01111 ATGAGTCTTGATGCTCTTTCTTCCAATGACTTGTTCAACTTCATCATCTACGACACGATCTCCGCAACACCGAACACCGAACACGCCCTCCGCGACTCATCGGAGAATACATTTCTCTCCGTCGACAAGTGTTCGAAACCCTACTCAAGAAAACGCCGTCCGAGTGAGGGAGACAGCAACCGAGCGACACCGTCATCAACAACGACGACGCAACAAGGGAAGAAGAAAAGGAAGAGAAAAGCAAAGGTTTGTAAGAACAAAGAGGAAGCTGAAACACAAAGAATGACACACATTGCTGTTGAAAGGAACCGCCGTAAACAAATGAATGAACATCTTTCGGTCTTACGTTCCCTCATGCCCGAATCCTATGTTCAAAGGGGTGACCAAGCATCCATAGTAGGTGGTGCAGTTGAGTTTGTGAAGGAATTGGAGCATCTTCTATCAACTTTAGAAGCCAAGAAGCTACAAATCTTACAACAAGAAGTAGATCATCATCAAGAACAAGAGATTAATGAAGATTCAAGAATGAGAATGAATGATAATAATAGTAATAAGTTGTTTTCATTTGCAAGTTTGTTGATGCATAATTCAGATCAAAATAACTATTGCTCCCAATACTCAACCAAATACACATCAAAATCCAAGGCTTCTTCAGCTGACATTGAAGTCACTTTGATTGAAACTCATGCAAACCTTAGAATCCTCTCAACAAGAAGCCATAGACAACTCTTGAAGCTCATTGCTGGCTTGCAAGCTCTTCGTCTCACTATTCTTCATCTCAATCTCACTGATTTCCACCCATTGGTTCTTTACTCCATTAGCCTCAAGGTTGAAGAAGGATGCCAACTGAGATCAGTAGATGACATAGCAGCAGCAGCACATCATATGGTGAGAATAATTGAGGAAGAAGCTGTTTTGTGTTAA 924 41.45 MSLDALSSNDLFNFIIYDTISATPNTEHALRDSSENTFLSVDKCSKPYSRKRRPSEGDSNRATPSSTTTTQQGKKKRKRKAKVCKNKEEAETQRMTHIAVERNRRKQMNEHLSVLRSLMPESYVQRGDQASIVGGAVEFVKELEHLLSTLEAKKLQILQQEVDHHQEQEINEDSRMRMNDNNSNKLFSFASLLMHNSDQNNYCSQYSTKYTSKSKASSADIEVTLIETHANLRILSTRSHRQLLKLIAGLQALRLTILHLNLTDFHPLVLYSISLKVEEGCQLRSVDDIAAAAHHMVRIIEEEAVLC 307
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 12068621 12072544 - ClCG09G011790.1 Cla09g01111 280531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g01111 307 MobiDBLite consensus disorder prediction 41 91 - -
Cla09g01111 307 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 91 160 IPR036638 GO:0046983
Cla09g01111 307 Coils Coil 140 160 - -
Cla09g01111 307 SMART finulus 98 149 IPR011598 GO:0046983
Cla09g01111 307 Pfam Helix-loop-helix DNA-binding domain 93 144 IPR011598 GO:0046983
Cla09g01111 307 PANTHER MAX DIMERIZATION, MAD 1 306 - -
Cla09g01111 307 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 92 143 IPR011598 GO:0046983
Cla09g01111 307 Gene3D - 82 174 IPR036638 GO:0046983
Cla09g01111 307 PANTHER TRANSCRIPTION FACTOR BHLH71 1 306 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g01134 Cla-Chr8:24069718 Cla09g01111 Cla-Chr9:12068621 1.03E-70 dispersed
Cla09g01111 Cla-Chr9:12068621 Cla02g00417 Cla-Chr2:4095436 1.04E-13 dispersed
Cla09g01111 Cla-Chr9:12068621 Cla02g01570 Cla-Chr2:30378559 2.29E-62 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61735 PF00010 HLH 1.00E-10 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g01111 - - csv:101210413 485.337