Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g01127 ATGGCGTCTGATAGCTTTACCGACAAGAACGCAGTATTCAGGAGGCTGAAGGCCAAGTCGGAGAACAAGATCTGTTTCGATTGTAATGCGAAGAACCCTACTTGGGCGTCGGTTACGTTTGGGATCTTCCTTTGTATTGATTGCTCCGCGGTTCATCGGAGCCTTGGCGTCCATATAAGCTTCGTCAGCATGAGAAAAGAGGAACGCGAGCGCAAGAGAGTGATGTCAACAAATTTGGACTCATGGTCAACGGAGCAGCTGAAAATGATGAGCTACGGCGGAAACACCCGTGCTCAGGTGTTCTTCAAGCAGCACGGCTGGAACGACGGCGGCAAAATCGAAGCCAAATACACCTCCAGGGCTGCAGATTTGTATAAACAAACCCTTTCCAAAGAAGTCGCTAAAACCATCGCTGAAGAACCCCCCCGCCCTTCTTCCCCTGTTTCTTCTCACTCCCATGGCAATGGCAATGCTCTCCCATTAATCAAAACCACCAAACAAGAAGCCCCTGAAATCTCATCTTCTCCAAAAGCCTCTCATTCTGTTGTTATTAAAAAACCCATCGGTGCTAAAAAGACAGGAAAGATTGGTGGACTTGGTGCTAGAAAGCTTACCACGAAGACGAACGAGAATCTGTATGATCAGAAACCAGAAGACCCACCAACCCCGGTTTCGTCGTCGATAACAACGAACGGTGCAATGGCCTCGTCGTTGGCTTCTCGGTTCGAGTATGTTGAGAATGCACAATCTTCTGATGTGAGCTCTAATGGATCCCCTGTGTTTGGTCATATTGCTCCACCGAAATCCTCTAGCTTCTTTGCTGACTTTGGAATGGACAATAATCACAATGTTGGTGTGTATTCAAAGAAATCAAGCTCAAATTCCACCAAAATCCAGGTGGAGGAAACTGAAGAAGCTCGGAAGAAATTCTCGAATGCGAAATCGATTTCATCTGCTCAATTCTTTGGAGATCAAAACAAATCTGCCGAGTCGGAGGCCAAGGCTTCATTGCGGAAGTTTACAAGTTCGTCGGCGATCTCGAGTGCCGATCTATTCGGTCAGGGGATGGATGATTCGACTCTGGATCTCGCAACAAACGAATTCATCAGCCGAATTTCTTTACAAGCTTCGCAAGATATATCATCATTAAAGAACATTGCGGGGGAGACAGGGAGGAAGCTGAGCTCATTGGCATCAACGTTGATTACTGATATTCAAGACAGGATTCTTTGA 1233 46.63 MASDSFTDKNAVFRRLKAKSENKICFDCNAKNPTWASVTFGIFLCIDCSAVHRSLGVHISFVSMRKEERERKRVMSTNLDSWSTEQLKMMSYGGNTRAQVFFKQHGWNDGGKIEAKYTSRAADLYKQTLSKEVAKTIAEEPPRPSSPVSSHSHGNGNALPLIKTTKQEAPEISSSPKASHSVVIKKPIGAKKTGKIGGLGARKLTTKTNENLYDQKPEDPPTPVSSSITTNGAMASSLASRFEYVENAQSSDVSSNGSPVFGHIAPPKSSSFFADFGMDNNHNVGVYSKKSSSNSTKIQVEETEEARKKFSNAKSISSAQFFGDQNKSAESEAKASLRKFTSSSAISSADLFGQGMDDSTLDLATNEFISRISLQASQDISSLKNIAGETGRKLSSLASTLITDIQDRIL 410
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 12448918 12451734 - ClCG09G011910.1 Cla09g01127 280547

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g01127 410 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD9-RELATED 1 410 - -
Cla09g01127 410 PANTHER ADP-RIBOSYLATION FACTOR GTPASE ACTIVATING PROTEIN 3, ISOFORM H-RELATED 1 410 - -
Cla09g01127 410 Pfam Putative GTPase activating protein for Arf 12 126 IPR001164 GO:0005096
Cla09g01127 410 SUPERFAMILY ArfGap/RecO-like zinc finger 11 137 IPR037278 -
Cla09g01127 410 CDD ArfGap_ArfGap2_3_like 8 135 - -
Cla09g01127 410 Gene3D Arf GTPase activating protein 1 150 IPR038508 -
Cla09g01127 410 SMART arf_gap_3 10 138 IPR001164 GO:0005096
Cla09g01127 410 MobiDBLite consensus disorder prediction 137 228 - -
Cla09g01127 410 PRINTS HIV Rev interacting protein signature 41 58 IPR001164 GO:0005096
Cla09g01127 410 PRINTS HIV Rev interacting protein signature 74 95 IPR001164 GO:0005096
Cla09g01127 410 PRINTS HIV Rev interacting protein signature 22 41 IPR001164 GO:0005096
Cla09g01127 410 MobiDBLite consensus disorder prediction 143 180 - -
Cla09g01127 410 ProSiteProfiles ARF GTPase-activating proteins domain profile. 10 140 IPR001164 GO:0005096
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g01127 K12493 ARFGAP2_3; ADP-ribosylation factor GTPase-activating protein 2/3 K11855 csv:101217929 692.189
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cla09g01127 Cla10g00158 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla09g01127 Cla-Chr9:12448918 Cla11g01802 Cla-Chr11:31674527 4.69E-19 dispersed
Cla05g01767 Cla-Chr5:29537395 Cla09g01127 Cla-Chr9:12448918 1.77E-07 transposed
Cla10g01995 Cla-Chr10:35802426 Cla09g01127 Cla-Chr9:12448918 9.88E-26 transposed
Cla10g00158 Cla-Chr10:1675930 Cla09g01127 Cla-Chr9:12448918 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g672 Blo02g00992 . . Bda08g00628 Bpe05g00530 . . . Cmo06g00656 Cmo16g01209 . . . . Sed02g0115 Cpe14g00961 . Bhi11g00157 Tan01g2189 Cmetu06g2430 . . Mch10g1655 . Cla10g00158 Cam10g0158 Cec10g0168 Cco10g0167 Clacu10g0160 Cmu10g1009 Cre10g0419 Cone8ag0472 Cone12ag0466 . . Lsi07g01197 . Chy04g00094 Cme06g02472 . . . . . . Bma05g00713 . Sed01g4109 . Cmo19g00250 Cma06g00647 Cma16g01158 Car06g00578 Car16g01098 . Cpe15g00213 Bhi05g00496 Tan07g1980 . . . . . Cla09g01127 Cam09g1182 Cec09g1193 Cco09g1214 . . Cre09g1144 . Csa03g04608 Chy06g02144 Cme04g00118
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001954 2 2 2 3 2 2 3 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 2 3 2 1 2 4 3 1 67
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla09g01127 Cla_Chr09 FPKM 312.19162 363.714752 50.278542 46.130146 22.2589 18.146029 23.801739 84.65696 90.527504 93.266785