Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g01129 ATGACCGACTATCGATTACCACCGACCATGAATCTCTGGGCGGATGAGAACGTCTCCATGATGGACGTTTTCACCAACTCCGATCTCAGTTCTTTCTGGGTTACGCCGCCACAGCCACAGCAACTTCCTCAGCCACCTTATTTCACCTCAACAGACCCGAGTAAAGCCGTCGGTCAAGCAACACCGCCACCGTCCATGGCGGTTTTTAACCAGGAGACTCTTATGCAGCGTCTCCAAACGTTGATTGAAGGTGCTCATGAGAACTGGACTTACGCTATCTTCTGGCAGTCTTCGTACGACTACTCCGGCCGTACGGTCTTGGGGTGGGGGGATGGATATTACAAAGGCGAGGAAGATAAAGGGAAAGAGAAAGCTAAATCGAGTACCTCAAAAGCAGAGCAAGAACACCGGAAGAAGGTACTTCGTGAGCTTAACTCTCTCATTTCTGGTTCTCCTTCCTCTGAAGGCGACGCCGTCGATGAGGTTGTCACCGACACCGAGTGGTTCTACTTGGTGTCGATGACTCAGTCGTTTGCTTCCGGTGTTGGATTGCCGGGACAGGCGTTTTTCGATTCGACCCCTATTTGGGTTGCTGGTTCGGATCGGCTTGCGAGCTCGGTCTGTGAGCGGGCTCGTCAGGGTCAGGTTTTCGGGTTGCAGACTATGGTTTGTATACCGTCGGCGAACGGAGTTGTTGAATTGGGATCGAGTGAGTTGATTTTCCAGAGCTCCGATCTGATGAATAAGGTTAGGGTTTTGTTTAATTTCAACAATTTGGAGGTGGAGAATTGGCCAATTAGTGGGGTTGACCAAGGGGAGAATGATCCTTCTTCACTTTGGATTAGTGAGCCATCTTCAAACGCCATTGAAATTACTAATCCTGTTGCTTCAGCTTCAGCTCCAGCTCCAACTCCAAGCACAACAAACAGCCAACCGATTTCTAAAATTACAACAGAGACGATCGAGAACCCAAAATCTAGTGTTGTAATTGAAACTCCAAGCCCTGTTGTTCCTCCTCCTTCTCAAAAAACTCACCGACAGTCACAGCCGATTCAGACACAGAGCTTCTTCACCAACAGGGAATTGAATTTCTCTGAATTTGGGTATGAGAATGGTCGTTTGAAGGATGGGAATTCCACTTCGTTGAAGCCGGAATCCGGTGAGATTTTGAATTTTGGGGAGAGTAAGAGGAGTTCTTATCCCAACACAGATAACAACTTGCCTTCAGGCAATTCTTTGTTTGGTGGGGATGAGAACAAGAAGAAGAGATCCCCCACTTCACGTGGGAGTAATGAAGAAGGGATGCTTTCTTTTACTTCTGGTGTGATTCTTCCTTCTTCTGGGGCTGTGAAATCAGGTCTTTGCGCTGGCGATTCCGATCACTCCGATCTTGAAGCTTCGGTAATTCGTGAGGTGGAGAGTAGTAGAGTGGTGGAGCCGGAGAAACGGCCTCGGAAAAGAGGGCGAAAGCCAGCAAATGGTAGAGAAGAACCATTGAATCACGTTGAAGCAGAGAGGCAAAGGAGAGAAAAGCTTAACCAAAGATTCTATGCTCTTCGAGCTGTTGTTCCAAATGTATCCAAAATGGACAAAGCTTCACTCCTTGGTGATGCTATCTCTTACATCAATGAGCTCAGAGGGAAGCTTCAAACTGCAGAATCAGATAAGGAAGATTTGCAGAAGCAATTGGATTCAGTGAAGAAGTTGATAATGTCTTCTAATAAAGATTCGTGCATATCAAGCTCAAATCAACCCCCACCAGATCAATCATCAAACACAAACCACAGTGATATCGAAACCGATATTGACGTGAAGATAATCAGTTGGGATGCGATGATCCGAATCCAATCTAGTAAGAAAAACCATCCTGCTGCACGGCTGATGGCGGCTTTGGAAGAACTCGACTTGGATATCAACCACGCGAGCATCTCAGTTGTCAATGATCTCATGATCCAACAAGCAACTGTGAAGATGGGGAGTCGATTATACACTCAAGAGCAGCTAAGGATAGCATTATCAGCTCGAGCCGATGCGTTGGAGGCAAAGAAGGAATATGCGATATGCAAACGGCATAAGCTCTGTAATATACTGTTCTCTACTAGTTCTTTAGGCAGTAGTGTTTTAGTATTTAAGTGA 2136 46.49 MTDYRLPPTMNLWADENVSMMDVFTNSDLSSFWVTPPQPQQLPQPPYFTSTDPSKAVGQATPPPSMAVFNQETLMQRLQTLIEGAHENWTYAIFWQSSYDYSGRTVLGWGDGYYKGEEDKGKEKAKSSTSKAEQEHRKKVLRELNSLISGSPSSEGDAVDEVVTDTEWFYLVSMTQSFASGVGLPGQAFFDSTPIWVAGSDRLASSVCERARQGQVFGLQTMVCIPSANGVVELGSSELIFQSSDLMNKVRVLFNFNNLEVENWPISGVDQGENDPSSLWISEPSSNAIEITNPVASASAPAPTPSTTNSQPISKITTETIENPKSSVVIETPSPVVPPPSQKTHRQSQPIQTQSFFTNRELNFSEFGYENGRLKDGNSTSLKPESGEILNFGESKRSSYPNTDNNLPSGNSLFGGDENKKKRSPTSRGSNEEGMLSFTSGVILPSSGAVKSGLCAGDSDHSDLEASVIREVESSRVVEPEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYINELRGKLQTAESDKEDLQKQLDSVKKLIMSSNKDSCISSSNQPPPDQSSNTNHSDIETDIDVKIISWDAMIRIQSSKKNHPAARLMAALEELDLDINHASISVVNDLMIQQATVKMGSRLYTQEQLRIALSARADALEAKKEYAICKRHKLCNILFSTSSLGSSVLVFK 711
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
9 12559892 12562104 + ClCG09G011922.1 Cla09g01129 280549
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cla09g01129 711 MobiDBLite consensus disorder prediction 392 434 - -
Cla09g01129 711 MobiDBLite consensus disorder prediction 574 597 - -
Cla09g01129 711 Coils Coil 542 576 - -
Cla09g01129 711 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 74 254 IPR025610 -
Cla09g01129 711 MobiDBLite consensus disorder prediction 341 357 - -
Cla09g01129 711 MobiDBLite consensus disorder prediction 473 506 - -
Cla09g01129 711 Pfam Helix-loop-helix DNA-binding domain 500 545 IPR011598 GO:0046983
Cla09g01129 711 CDD bHLH_AtAIB_like 493 568 - -
Cla09g01129 711 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 496 545 IPR011598 GO:0046983
Cla09g01129 711 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 499 569 IPR036638 GO:0046983
Cla09g01129 711 SMART finulus 502 551 IPR011598 GO:0046983
Cla09g01129 711 Gene3D - 495 573 IPR036638 GO:0046983
Cla09g01129 711 MobiDBLite consensus disorder prediction 392 413 - -
Cla09g01129 711 MobiDBLite consensus disorder prediction 296 330 - -
Cla09g01129 711 MobiDBLite consensus disorder prediction 296 357 - -
Cla09g01129 711 PANTHER TRANSCRIPTION FACTOR MYC2 13 676 - -
Cla09g01129 711 MobiDBLite consensus disorder prediction 118 137 - -
Cla09g01129 711 PANTHER MYC 13 676 IPR045084 GO:0003700|GO:0006355
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Cla09g01129 Cla10g00159 CCT
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g00074 Cla-Chr7:856632 Cla09g01129 Cla-Chr9:12559892 2.14E-15 dispersed
Cla09g01129 Cla-Chr9:12559892 Cla11g00989 Cla-Chr11:18870608 5.66E-07 dispersed
Cla06g00348 Cla-Chr6:4413999 Cla09g01129 Cla-Chr9:12559892 1.09E-16 transposed
Cla06g00792 Cla-Chr6:10919084 Cla09g01129 Cla-Chr9:12559892 3.28E-10 transposed
Cla07g00024 Cla-Chr7:270277 Cla09g01129 Cla-Chr9:12559892 5.13E-09 transposed
Cla10g00083 Cla-Chr10:808041 Cla09g01129 Cla-Chr9:12559892 5.04E-23 transposed
Cla10g00159 Cla-Chr10:1703280 Cla09g01129 Cla-Chr9:12559892 0 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61739 PF14215 bHLH-MYC_N 7.80E-55 CL0161 Cla TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g01129 K13422 - csv:101218165 1148.65