Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla09g01129 | ATGACCGACTATCGATTACCACCGACCATGAATCTCTGGGCGGATGAGAACGTCTCCATGATGGACGTTTTCACCAACTCCGATCTCAGTTCTTTCTGGGTTACGCCGCCACAGCCACAGCAACTTCCTCAGCCACCTTATTTCACCTCAACAGACCCGAGTAAAGCCGTCGGTCAAGCAACACCGCCACCGTCCATGGCGGTTTTTAACCAGGAGACTCTTATGCAGCGTCTCCAAACGTTGATTGAAGGTGCTCATGAGAACTGGACTTACGCTATCTTCTGGCAGTCTTCGTACGACTACTCCGGCCGTACGGTCTTGGGGTGGGGGGATGGATATTACAAAGGCGAGGAAGATAAAGGGAAAGAGAAAGCTAAATCGAGTACCTCAAAAGCAGAGCAAGAACACCGGAAGAAGGTACTTCGTGAGCTTAACTCTCTCATTTCTGGTTCTCCTTCCTCTGAAGGCGACGCCGTCGATGAGGTTGTCACCGACACCGAGTGGTTCTACTTGGTGTCGATGACTCAGTCGTTTGCTTCCGGTGTTGGATTGCCGGGACAGGCGTTTTTCGATTCGACCCCTATTTGGGTTGCTGGTTCGGATCGGCTTGCGAGCTCGGTCTGTGAGCGGGCTCGTCAGGGTCAGGTTTTCGGGTTGCAGACTATGGTTTGTATACCGTCGGCGAACGGAGTTGTTGAATTGGGATCGAGTGAGTTGATTTTCCAGAGCTCCGATCTGATGAATAAGGTTAGGGTTTTGTTTAATTTCAACAATTTGGAGGTGGAGAATTGGCCAATTAGTGGGGTTGACCAAGGGGAGAATGATCCTTCTTCACTTTGGATTAGTGAGCCATCTTCAAACGCCATTGAAATTACTAATCCTGTTGCTTCAGCTTCAGCTCCAGCTCCAACTCCAAGCACAACAAACAGCCAACCGATTTCTAAAATTACAACAGAGACGATCGAGAACCCAAAATCTAGTGTTGTAATTGAAACTCCAAGCCCTGTTGTTCCTCCTCCTTCTCAAAAAACTCACCGACAGTCACAGCCGATTCAGACACAGAGCTTCTTCACCAACAGGGAATTGAATTTCTCTGAATTTGGGTATGAGAATGGTCGTTTGAAGGATGGGAATTCCACTTCGTTGAAGCCGGAATCCGGTGAGATTTTGAATTTTGGGGAGAGTAAGAGGAGTTCTTATCCCAACACAGATAACAACTTGCCTTCAGGCAATTCTTTGTTTGGTGGGGATGAGAACAAGAAGAAGAGATCCCCCACTTCACGTGGGAGTAATGAAGAAGGGATGCTTTCTTTTACTTCTGGTGTGATTCTTCCTTCTTCTGGGGCTGTGAAATCAGGTCTTTGCGCTGGCGATTCCGATCACTCCGATCTTGAAGCTTCGGTAATTCGTGAGGTGGAGAGTAGTAGAGTGGTGGAGCCGGAGAAACGGCCTCGGAAAAGAGGGCGAAAGCCAGCAAATGGTAGAGAAGAACCATTGAATCACGTTGAAGCAGAGAGGCAAAGGAGAGAAAAGCTTAACCAAAGATTCTATGCTCTTCGAGCTGTTGTTCCAAATGTATCCAAAATGGACAAAGCTTCACTCCTTGGTGATGCTATCTCTTACATCAATGAGCTCAGAGGGAAGCTTCAAACTGCAGAATCAGATAAGGAAGATTTGCAGAAGCAATTGGATTCAGTGAAGAAGTTGATAATGTCTTCTAATAAAGATTCGTGCATATCAAGCTCAAATCAACCCCCACCAGATCAATCATCAAACACAAACCACAGTGATATCGAAACCGATATTGACGTGAAGATAATCAGTTGGGATGCGATGATCCGAATCCAATCTAGTAAGAAAAACCATCCTGCTGCACGGCTGATGGCGGCTTTGGAAGAACTCGACTTGGATATCAACCACGCGAGCATCTCAGTTGTCAATGATCTCATGATCCAACAAGCAACTGTGAAGATGGGGAGTCGATTATACACTCAAGAGCAGCTAAGGATAGCATTATCAGCTCGAGCCGATGCGTTGGAGGCAAAGAAGGAATATGCGATATGCAAACGGCATAAGCTCTGTAATATACTGTTCTCTACTAGTTCTTTAGGCAGTAGTGTTTTAGTATTTAAGTGA | 2136 | 46.49 | MTDYRLPPTMNLWADENVSMMDVFTNSDLSSFWVTPPQPQQLPQPPYFTSTDPSKAVGQATPPPSMAVFNQETLMQRLQTLIEGAHENWTYAIFWQSSYDYSGRTVLGWGDGYYKGEEDKGKEKAKSSTSKAEQEHRKKVLRELNSLISGSPSSEGDAVDEVVTDTEWFYLVSMTQSFASGVGLPGQAFFDSTPIWVAGSDRLASSVCERARQGQVFGLQTMVCIPSANGVVELGSSELIFQSSDLMNKVRVLFNFNNLEVENWPISGVDQGENDPSSLWISEPSSNAIEITNPVASASAPAPTPSTTNSQPISKITTETIENPKSSVVIETPSPVVPPPSQKTHRQSQPIQTQSFFTNRELNFSEFGYENGRLKDGNSTSLKPESGEILNFGESKRSSYPNTDNNLPSGNSLFGGDENKKKRSPTSRGSNEEGMLSFTSGVILPSSGAVKSGLCAGDSDHSDLEASVIREVESSRVVEPEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYINELRGKLQTAESDKEDLQKQLDSVKKLIMSSNKDSCISSSNQPPPDQSSNTNHSDIETDIDVKIISWDAMIRIQSSKKNHPAARLMAALEELDLDINHASISVVNDLMIQQATVKMGSRLYTQEQLRIALSARADALEAKKEYAICKRHKLCNILFSTSSLGSSVLVFK | 711 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 12559892 | 12562104 | + | ClCG09G011922.1 | Cla09g01129 | 280549 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla09g01129 | 711 | MobiDBLite | consensus disorder prediction | 392 | 434 | - | - | |
| Cla09g01129 | 711 | MobiDBLite | consensus disorder prediction | 574 | 597 | - | - | |
| Cla09g01129 | 711 | Coils | Coil | 542 | 576 | - | - | |
| Cla09g01129 | 711 | Pfam | bHLH-MYC and R2R3-MYB transcription factors N-terminal | 74 | 254 | IPR025610 | - | |
| Cla09g01129 | 711 | MobiDBLite | consensus disorder prediction | 341 | 357 | - | - | |
| Cla09g01129 | 711 | MobiDBLite | consensus disorder prediction | 473 | 506 | - | - | |
| Cla09g01129 | 711 | Pfam | Helix-loop-helix DNA-binding domain | 500 | 545 | IPR011598 | GO:0046983 | |
| Cla09g01129 | 711 | CDD | bHLH_AtAIB_like | 493 | 568 | - | - | |
| Cla09g01129 | 711 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 496 | 545 | IPR011598 | GO:0046983 | |
| Cla09g01129 | 711 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 499 | 569 | IPR036638 | GO:0046983 | |
| Cla09g01129 | 711 | SMART | finulus | 502 | 551 | IPR011598 | GO:0046983 | |
| Cla09g01129 | 711 | Gene3D | - | 495 | 573 | IPR036638 | GO:0046983 | |
| Cla09g01129 | 711 | MobiDBLite | consensus disorder prediction | 392 | 413 | - | - | |
| Cla09g01129 | 711 | MobiDBLite | consensus disorder prediction | 296 | 330 | - | - | |
| Cla09g01129 | 711 | MobiDBLite | consensus disorder prediction | 296 | 357 | - | - | |
| Cla09g01129 | 711 | PANTHER | TRANSCRIPTION FACTOR MYC2 | 13 | 676 | - | - | |
| Cla09g01129 | 711 | MobiDBLite | consensus disorder prediction | 118 | 137 | - | - | |
| Cla09g01129 | 711 | PANTHER | MYC | 13 | 676 | IPR045084 | GO:0003700|GO:0006355 |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cla09g01129 | Cla10g00159 | CCT |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla07g00074 | Cla-Chr7:856632 | Cla09g01129 | Cla-Chr9:12559892 | 2.14E-15 | dispersed | |
| Cla09g01129 | Cla-Chr9:12559892 | Cla11g00989 | Cla-Chr11:18870608 | 5.66E-07 | dispersed | |
| Cla06g00348 | Cla-Chr6:4413999 | Cla09g01129 | Cla-Chr9:12559892 | 1.09E-16 | transposed | |
| Cla06g00792 | Cla-Chr6:10919084 | Cla09g01129 | Cla-Chr9:12559892 | 3.28E-10 | transposed | |
| Cla07g00024 | Cla-Chr7:270277 | Cla09g01129 | Cla-Chr9:12559892 | 5.13E-09 | transposed | |
| Cla10g00083 | Cla-Chr10:808041 | Cla09g01129 | Cla-Chr9:12559892 | 5.04E-23 | transposed | |
| Cla10g00159 | Cla-Chr10:1703280 | Cla09g01129 | Cla-Chr9:12559892 | 0 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 61739 | PF14215 | bHLH-MYC_N | 7.80E-55 | CL0161 | Cla | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla09g01129 | K13422 | - | csv:101218165 | 1148.65 |