Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g01139 ATGGCTGGTCTGGATTTAGGCAATCGCTATATTCACCAACTTCAAAGGCCTAATTTCAACCTTCACCACCATCATCAGAACCACCACCATCCCGACTCTCAATCTGGTCATGATGATGAATCCCATCCTCCGTCAGAATTTGTCACCGCCGCAGACTCTACCGCACCTGCCACAGATATGGTGGCCTCTCGCCGACCACGCGGCCGTCCACCCGGTTCCAAAAACAAACCGAAGCCACCGGTCATCATAACCCGAGAAAGCGCCAATACCCTAAGGGCTCATATTCTTGAGGTTGGTAATGGCTGTGACGTCTTCGATAGCATCGCTACCTATGCTCGTCGTCGCCAGCGAGGGATCTGCATCTTGAGCGGTAGTGGAATGGTAATGAATGTCAACTTACGGCAACCGACGGCGACGGGGTCTGTGTTAACCCTACATGGAAGGTTTGAGATATTATCCCTTACTGGATCTTTCTTGCCGCCGCCTGCTCCTCCCGGCGCTACTAGTTTGACTATATACTTAGCCGGTGGGCAAGGGCAAGTGGTCGGTGGAAACGTTGTTGGGGAATTGGTGGCGGCAGGGCCAGTTACAATCATCGCGGCATCATTTACAAATGTAGCGTATGAGAGATTGCCACTAGAAGAACAAGAGCAAGAACAAGAACAAGAGCAAGATCAACTTCAGATGCAGCCACCAACGTCTCAGGGCGGCAGTAGCGGTGGAAACAATAACAACCCATTTCCAGATCCATCTTCAGGGCTTCCTTTCTTCAATTTGCCTCTAAATATGCAGAACCAAATTCAGCTACCATTTTGA 816 50.37 MAGLDLGNRYIHQLQRPNFNLHHHHQNHHHPDSQSGHDDESHPPSEFVTAADSTAPATDMVASRRPRGRPPGSKNKPKPPVIITRESANTLRAHILEVGNGCDVFDSIATYARRRQRGICILSGSGMVMNVNLRQPTATGSVLTLHGRFEILSLTGSFLPPPAPPGATSLTIYLAGGQGQVVGGNVVGELVAAGPVTIIAASFTNVAYERLPLEEQEQEQEQEQDQLQMQPPTSQGGSSGGNNNNPFPDPSSGLPFFNLPLNMQNQIQLPF 271
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 12782911 12783726 - ClCG09G011985.1 Cla09g01139 280559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g01139 271 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 1 270 - -
Cla09g01139 271 Pfam Plants and Prokaryotes Conserved (PCC) domain 92 205 IPR005175 -
Cla09g01139 271 MobiDBLite consensus disorder prediction 31 45 - -
Cla09g01139 271 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 1 270 IPR014476 GO:0003680
Cla09g01139 271 SUPERFAMILY AF0104/ALDC/Ptd012-like 88 217 - -
Cla09g01139 271 MobiDBLite consensus disorder prediction 22 81 - -
Cla09g01139 271 MobiDBLite consensus disorder prediction 215 258 - -
Cla09g01139 271 ProSiteProfiles PPC domain profile profile. 88 224 IPR005175 -
Cla09g01139 271 MobiDBLite consensus disorder prediction 223 258 - -
Cla09g01139 271 Gene3D - 91 226 - -
Cla09g01139 271 CDD DUF296 92 175 IPR005175 -
Cla09g01139 271 PIRSF ESCAROLA 7 269 IPR014476 GO:0003680
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g00062 Cla-Chr6:653729 Cla09g01139 Cla-Chr9:12782911 5.98E-88 dispersed
Cla07g00325 Cla-Chr7:3777463 Cla09g01139 Cla-Chr9:12782911 4.89E-64 dispersed
Cla09g01139 Cla-Chr9:12782911 Cla11g00643 Cla-Chr11:7363514 2.36E-63 dispersed
Cla10g00170 Cla-Chr10:1791806 Cla09g01139 Cla-Chr9:12782911 1.14E-94 wgd
Cla05g00274 Cla-Chr5:2486749 Cla09g01139 Cla-Chr9:12782911 4.45E-89 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g01139 - - cmo:103503535 398.282