Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g01145 ATGGGTTCCATTGAAGACATTCTTGGTGAGCTTGAGAAGGGTTCCTACATTTCTTTACTGTCGAAGCTCATCGGGGAGGCGAAGTTTGTCCAGAACAACCCGCCCGACCTGGTTCCCGTAGAGGATAAGATCGGCAGTCACGTTCTTGATGTTCTTCTTCCGTACAGCACTGACAATGGCGGACCCTTGATCATCAAGCAGGTCAGCTATGTTCATGGGCGTGGAAATTTGATTATTGAGTATCCAGGATCTGTTCCTAAAAAAGTCGTATCCTTCGTCGGAAGTCACATGGATGTCGTCCCTGCCGATCCCGATACTTGGGAATTTGATCCATTCTCATTGAGTATTGATGGGGATAAACTAAGAGGTCGTGGGACTACAGATTGTTTGGGACATGTTGCTCTTTTAACTGAACTCTTGAAGAAAATTGCACAAACTAAACCACCATTGAAGTCTTCTGTTGTTGTTATATTCATTGCCTCTGAAGAGAACAATTCAATCCAAGGAATTGGAGTTGAACAACTTTGGGCAGATGGATACTTTGATAATTTAAAAGGAGGCCCTCTATATTGGATTGATACAGCAGATTCACAACCTTGCATTGGTACTGGAGGTTCTTTAACTTGGTCTATTAAAACTACTGGAAAGCTTTTCCATAGTGGTATGCCAGATAAGGCTATTAATGCTTTGGAGCTAGCAATGGATGCTCTCAAACCAATCCAATTAAGCTTTTATAAAGATTTTCCTGCTCATCCTAAGGAAGCAGACTATAAATTTACAATACCATCAACCATGAAACCAACCCAATGGAATTATCCAGGAGGTGGTATTAATCAAATTCCAGGAGAATCTACTATTGCAGGAGATGTAAGGTTAACTCCCTTCTACGAAATGGATGATGTTAAGACAAAAATCCAAGGGTATGTTGATGACATTAATGCACACGTGGAGAATCTTGAATCAAGGGGCCCTGTTTCAAAGTATACCCTACCAGATGAAGGCTTAAGGGGAAGAATTGATATAAGTTTTGGTGTGCCGTTGCCCGGAATTGCATGTGATCTTGATTCCATTGGCTATAAAGTTTTATACAATGCAACAGAGAAAGTTATAGGGTATGTCAAACCTTACTCACTAACAGGGAGTTTGCCGCTTGTTTATGACCTTCAGAAGGAGGGCTATGACGTTCAGAACGTTGGCTATGGCTTAACTGATACCTACCACGCAGATAATGAGTATTGTCTTTATAGTGATATGAGCAATGGCTACAAGTCTCTTAGTTTTTCCCACTTTTCCCCACCCCCGTTCTCTTCTGCTCCTTATTACTTTGGGACACGATCCGCTGGATCAGACATGCCGGTGGCTGCATCGGCCATTTACTTCCTCAATCTCCGAGGGGATGTTCTCATTAATCGTCTCTACCGCGACGATGTCGGGGGAAACATGGTGGATGCCTTCCGAACACATATAATGCAGACAAAAGAACTTGGCACCTGTCCTGTGCGGCAGATTGGTGGTTGCTCTTTCTTTTACATGAGAATTAGCAATGTATACATTGTGATTGTTGTAAGCAGCAATGCAAATGTAGCTTGTGCATTCAAGTTTGTGGTTGAGGCTGTTGCACTGTTCAAATCTTATTTTGGTGGGGCTTTTGATGAAGATGCAATTCGAAACAATTTTGTTCTTATTTATGAGCTCTTGGATGAAATAATGGATTTTGGTTACCCACAAAACCTCTCTCCTGAAATTCTAAAACTATATATCACTCAGGAAGGAGTTCGCTCGCCATTCTCATCCAAGCCTTCAGATAAACCTGTCCCAAATGCAACTTTACAAGTTACGGGTGCTGTTGGTTGGCGAAGGGAAGGCCTTGTATATAAAAAGAATGAGGTCTTTTTGGATATAGTTGAAAGTGTAAACCTTCTTATGTCTTCAAAAGGTAGTGTTCTGCGTTGCGATGTAACTGGGAAGATTCTTATGAAGTGCTTTCTTTCTGGCATGCCTGATTTAAAGTTGGGTTTAAACGATAAGATTGGCCTTGAGAAAGAGTCACAGTTGAAGTCCCGTCCAGCTAAGAGTGGTAAAACAATTGAGCTTGATGATGTTACTTTTCATCAATGTGTAAATTTGACGAGGTTTAACTCAGAGAAGACAGTCAGCTTTGTACCGCCGGATGGGGAATTTGAATTGATGAAATACCGTATTACTGAGGGTGTTAATCTTCCATTTCGAGTTCTCCCAACAATTAAGGAACTTGGTAGGACACATATGGAAGTTAATGTTAAGGTGAAGAGTGTCTTTGGTGCAAAAATGTTTGCTCTTGGCGTGGTCATTAAAATTCCTGTTCCAAAACAGACAGCTAAAACTAGTTTTCAAGTGACATCAGGTCGAGCCAAGTACAACGCCTCAATCGATTGCATTGTGTGGAAGATCAGAAAATTTCCTGGACAAACAGAACCAACCATGAGTGCAGAAGTCGAGCTGATTTCTACAATGACCGAAAGGAAGCCTTGGACACGGCCACCAATTCAGATGGAGTTTCAGGTTCCCATGTTCACAGCATCTGGTTTACGAGTCCGTTTCCTTAAGGTGTGGGAGAAAAGTGGTTACAACACCGTCGAATGGGTTCGTTACATAACTAAAGCTGGATCATATGAGATCCGGTGTTAG 2667 41.88 MGSIEDILGELEKGSYISLLSKLIGEAKFVQNNPPDLVPVEDKIGSHVLDVLLPYSTDNGGPLIIKQVSYVHGRGNLIIEYPGSVPKKVVSFVGSHMDVVPADPDTWEFDPFSLSIDGDKLRGRGTTDCLGHVALLTELLKKIAQTKPPLKSSVVVIFIASEENNSIQGIGVEQLWADGYFDNLKGGPLYWIDTADSQPCIGTGGSLTWSIKTTGKLFHSGMPDKAINALELAMDALKPIQLSFYKDFPAHPKEADYKFTIPSTMKPTQWNYPGGGINQIPGESTIAGDVRLTPFYEMDDVKTKIQGYVDDINAHVENLESRGPVSKYTLPDEGLRGRIDISFGVPLPGIACDLDSIGYKVLYNATEKVIGYVKPYSLTGSLPLVYDLQKEGYDVQNVGYGLTDTYHADNEYCLYSDMSNGYKSLSFSHFSPPPFSSAPYYFGTRSAGSDMPVAASAIYFLNLRGDVLINRLYRDDVGGNMVDAFRTHIMQTKELGTCPVRQIGGCSFFYMRISNVYIVIVVSSNANVACAFKFVVEAVALFKSYFGGAFDEDAIRNNFVLIYELLDEIMDFGYPQNLSPEILKLYITQEGVRSPFSSKPSDKPVPNATLQVTGAVGWRREGLVYKKNEVFLDIVESVNLLMSSKGSVLRCDVTGKILMKCFLSGMPDLKLGLNDKIGLEKESQLKSRPAKSGKTIELDDVTFHQCVNLTRFNSEKTVSFVPPDGEFELMKYRITEGVNLPFRVLPTIKELGRTHMEVNVKVKSVFGAKMFALGVVIKIPVPKQTAKTSFQVTSGRAKYNASIDCIVWKIRKFPGQTEPTMSAEVELISTMTERKPWTRPPIQMEFQVPMFTASGLRVRFLKVWEKSGYNTVEWVRYITKAGSYEIRC 888
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 13196386 13215833 + ClCG09G012040.2 Cla09g01145 280565

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g01145 888 Gene3D - 455 595 - -
Cla09g01145 888 Pfam Peptidase family M20/M25/M40 93 425 IPR002933 GO:0016787
Cla09g01145 888 PANTHER AP COMPLEX SUBUNIT MU 467 888 - -
Cla09g01145 888 Gene3D Mu homology domain, subdomain B 625 883 - -
Cla09g01145 888 Pfam Peptidase dimerisation domain 201 314 IPR011650 -
Cla09g01145 888 Gene3D Mu homology domain, subdomain B 740 887 - -
Cla09g01145 888 SUPERFAMILY Bacterial exopeptidase dimerisation domain 205 315 IPR036264 -
Cla09g01145 888 ProSiteProfiles Mu homology domain (MHD) profile. 627 887 IPR028565 -
Cla09g01145 888 SUPERFAMILY SNARE-like 456 592 IPR011012 -
Cla09g01145 888 CDD AP-2_Mu2_Cterm 625 887 IPR043512 -
Cla09g01145 888 PRINTS Clathrin coat assembly protein signature 552 579 IPR001392 GO:0006886|GO:0016192|GO:0030131
Cla09g01145 888 PRINTS Clathrin coat assembly protein signature 767 782 IPR001392 GO:0006886|GO:0016192|GO:0030131
Cla09g01145 888 PRINTS Clathrin coat assembly protein signature 465 485 IPR001392 GO:0006886|GO:0016192|GO:0030131
Cla09g01145 888 PRINTS Clathrin coat assembly protein signature 698 725 IPR001392 GO:0006886|GO:0016192|GO:0030131
Cla09g01145 888 PRINTS Clathrin coat assembly protein signature 618 646 IPR001392 GO:0006886|GO:0016192|GO:0030131
Cla09g01145 888 PRINTS Clathrin coat assembly protein signature 807 818 IPR001392 GO:0006886|GO:0016192|GO:0030131
Cla09g01145 888 CDD AP2_Mu_N 456 594 IPR043532 -
Cla09g01145 888 Gene3D - 205 320 - -
Cla09g01145 888 PANTHER AP-2 COMPLEX SUBUNIT MU 467 888 - -
Cla09g01145 888 ProSitePatterns Clathrin adaptor complexes medium chain signature 1. 616 636 IPR018240 GO:0006886|GO:0016192|GO:0030131
Cla09g01145 888 SUPERFAMILY Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor 616 887 IPR036168 -
Cla09g01145 888 SUPERFAMILY Zn-dependent exopeptidases 73 424 - -
Cla09g01145 888 Pfam Adaptor complexes medium subunit family 617 888 IPR028565 -
Cla09g01145 888 Gene3D Zn peptidases 40 189 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g01145 K11826 AP2M1; AP-2 complex subunit mu-1 - csv:101220779 858.211
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g02573 Cla-Chr5:36964523 Cla09g01145 Cla-Chr9:13196386 3.61E-117 dispersed
Cla09g01143 Cla-Chr9:13094429 Cla09g01145 Cla-Chr9:13196386 0 dispersed
Cla09g01144 Cla-Chr9:13134972 Cla09g01145 Cla-Chr9:13196386 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g662 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone12ag0458 . . . . . . . . . . . . . Bma12g00203 . . . . . . . . . . . . . . . . Cla09g01145 Cam09g1204 Cec09g1218 Cco09g1245 . . Cre09g1165 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004704 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 3 1 1 1 1 1 1 1 1 3 1 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla09g01145 Cla_Chr09 FPKM 1.925488 2.209394 16.680344 15.641945 43.394176 43.273785 46.777485 23.002691 24.147539 26.427177