Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g01175 ATGGCTCTCTCTTCTTTCTCTTCTGTTTCTGTTTTCGTAATAACTTTGCTTCTCATGCAAAGGCTCTCAGACAGTGCCACATGTAACGATTGTTTCACACGCTCTCGAGCTGCCCATTACCCTAATTCGGAGGAGCAAGGAACAGATCATGGAGCGTGTGGGTATGGATCTTTTGGAGCAACGATTAACGGTGGAGATGTTGCAACTGCCTCTGATCTTTACAGAAATGGCCTTGGTTGTGGAGCTTGTTACCAGATAAGATGCATAGACAGTGAATTGTGCTCGGAGAAGGGAACAATGGTGGTGATAACGGATCAAGGGTCAGGGCCAGGTGATTTTATAATGAGCCAAAGAGCCTATGCTGGGTTGGCTCAAACCCCTTATGCTGCTGCTTCTCTGATGGCACTTGGTGTCATTGACATTGAATACAAACGATGGATGTTACTAAAGAAATTCTTCGTATTAGTGGGTTGCAGCTACCCAAACAGAAACATAACAATAAAGATCGATGAGAACAGTAATGCTCCTCATTATTTGGCCTTTGTCATAAGATTTCAACAAGGCAAAAATGATATCACCGCCGTTCAACTTTGCGAGACGAAGAACTTCGTGTGCAAGCTATTAGATCGGAGCTACGGTACCGTGTGGACGACGGCTTCCCCGCCGAGGGGACCGTTGTCGTTGAGAATGTTGCTGACAAATGACGATGGAGATGAGCAATGGATAGTCCCCATTAATGATATTCCTCGTGACTGGAAGGCTGGAGATATCTACGACACTGGAGTTCAAGTTAATTAA 798 45.11 MALSSFSSVSVFVITLLLMQRLSDSATCNDCFTRSRAAHYPNSEEQGTDHGACGYGSFGATINGGDVATASDLYRNGLGCGACYQIRCIDSELCSEKGTMVVITDQGSGPGDFIMSQRAYAGLAQTPYAAASLMALGVIDIEYKRWMLLKKFFVLVGCSYPNRNITIKIDENSNAPHYLAFVIRFQQGKNDITAVQLCETKNFVCKLLDRSYGTVWTTASPPRGPLSLRMLLTNDDGDEQWIVPINDIPRDWKAGDIYDTGVQVN 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 14172897 14176393 - ClCG09G012380.1 Cla09g01175 280595

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g01175 265 Pfam Lytic transglycolase 69 143 IPR009009 -
Cla09g01175 265 Gene3D - 18 146 IPR036908 -
Cla09g01175 265 SUPERFAMILY PHL pollen allergen 163 259 IPR036749 -
Cla09g01175 265 SMART dpbb_1 66 143 IPR007112 -
Cla09g01175 265 Pfam Expansin C-terminal domain 165 246 IPR007117 -
Cla09g01175 265 Gene3D - 160 264 IPR036749 -
Cla09g01175 265 SUPERFAMILY Barwin-like endoglucanases 25 145 IPR036908 -
Cla09g01175 265 PANTHER EXPANSIN-B3 6 265 - -
Cla09g01175 265 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 50 145 IPR007112 -
Cla09g01175 265 PANTHER POLLEN ALLERGEN ORY S 1, PUTATIVE-RELATED 6 265 - -
Cla09g01175 265 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 177 260 IPR007117 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g01175 - - - csv:101204155 489.574
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla09g01175 Cla-Chr9:14172897 Cla09g01215 Cla-Chr9:15423308 6.43E-65 dispersed
Cla09g01175 Cla-Chr9:14172897 Cla02g01720 Cla-Chr2:32085352 9.47E-26 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g630 . Blo03g00121 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0450 Cone12ag0440 . . . . Chy04g00051 . . . . . . . . . . . . . . . . . . . . . . . . . Cla09g01175 Cam09g1240 Cec09g1256 Cco09g1286 . . Cre09g1204 . Csa03g04649 . Cme04g00065
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012023 0 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 0 1 0 1 4 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla09g01175 Cla_Chr09 FPKM 0.035318 0.0 0.288963 0.263848 0.0 0.0 0.030695 0.0 0.0 0.0