Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g01176 CTCCTTCTGTTCTTCAACATCTTCTCCTTCTTCACTCTCATCATTCTCACTTTCCTCTCTTTGATCCTCTCTCATGCTCCGAATTCAACCTCTTCTTTTACTTCTGCAGTACACAACGCTGAGTTTGGCGGAATGGCTTCCATGGAGACCTTGATCGGCCTCGTTAACCGTATACAAAGGGCTTGTACTGTACTTGGTGATTATGGCGGTGATTCTGCCTTGCCTACTCTTTGGGAGGCTCTTCCATCTGTTGTTGTCGTCGGCGGTCAGAGCTCTGGAAAGTCATCGGTGTTGGAGAGCATCGTTGGTCGTGATTTTCTTCCCAGGGGATCAGGAATTGTTACGCGGAGGCCTCTGGTTCTGCAGCTTCAGAAGACAGAACCAGGAAGAGAGGAGTATGCAGAATTTCTTCATCTGCCTAAGAAAAAATTCTCTGATTTCTCAATGGTTAGGAAGGAAATAGAAAATGAAACTGATAGCTTGACTGGGAGGTTAAAACAGATTTCTCCTGTTCCAATTCATCTCAGTATCTACTCTCCAAATGTGGTCAATTTGACACTCATTGATTTGCCTGGTTTAACAAAGGTTGCTGTAGAAGGACAGCCTGAGAGTATCGTACAAGATATTGAGACAATGGTCCGTACTTATGTCGAGAAGCCAAACTGCATTATTTTGGCCATAACTCCAGCTAATCAAGATATTGCAACATCTGATGCTATTAAGCTTTCTCGAGAGGTTGATCCCACAGGCATGACATTTGGGGTGCTGACAAAGCTTGATTTGATGGATAAAGGAACAAACGCTTTAGAAAATATTGATATGATTACCGCTCGGCGAAGGGAACGTGAATTCTTTGCTTCTAGTGTTGACTACAGACACTTGGCTGGAACAATGGGGTCAGAGTATCTAGCAAAACTCCTCTCAAAGCACCTAGAGTCTCTGATAAAAACACGTATACCTGGCATTGCATCATTAATTGACAAAAGCATTGATGAAATTGAAGCGGAGCTTAATCAGCTTGGGAAGCCTGTTGCAATTGATTCTGGGGCTCAGTTATATACTATCCTAGAGCTTTGCCGTGCATTTGACCTAGTGTTTAAGGAGCATCTCCATGGGGGGAGACCTGGTGGTGATCGGATATATAATGTTTTTGATAATCAGCTCCCTCATGCTTTGAGAAGGCTTCCCTTTGATCGCTATCTCTCACTGCAAAATGTGAGGAAAGTGATATCGGAGGCCGATGGATATCAACCTCATCTGATCGCACCCGAGCATGGGTATCGGCGCCTTATTGAAGGTGCAGTTAATTATTTTAGAGGTCCGGCTGAAGCTTCAGTTGATGCTGTTCATTCCATTTTGAAGGAACTCGTTAGAAGAGCAATGGCAGAAACTGAGGAGCTGAAGCGCTTCCCCACTCTCCAAGCTGAAGTTTCAAGAGCTGCAAACGAAGCATTAGAGAGATTTCGAGAAGATAGCAAAAAGACAACCTTGCGATTGGTTGACATGGAATCCTCCTACCTAACAGTAGACTTCTTTCGAAAGCTCCCAGAGGAAGATGAAAAGGGAGGAACCCCACCAGCTGCAGCTTCCACAGATAGGTATACCGAGGCGCATTTTCACCGGATAGCATCAAATATTTCCTCTTATATCAGGATGGTATCTGAGACACTGAGGAACACTATTCCAAAGTCTGTTGTTCATTGTCAAGTTAGGGAAGCAAAGCGATCTATATTAGATTACTTTTATGTGCAATTGGGACAAATGGAGGGTAATCAACTTGCAGCTCTTCTGGATGAAGATCCTGCATTGGTTGAAACGAGACAGCAGTGTGCCAAAAGGCTCGAACTACATAAATCTGCAAGGGATGAGATCGACTCGGTCTCATGGTGCATTTCGTCTTTGAATTTT 1908 44.03 LLLFFNIFSFFTLIILTFLSLILSHAPNSTSSFTSAVHNAEFGGMASMETLIGLVNRIQRACTVLGDYGGDSALPTLWEALPSVVVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLQKTEPGREEYAEFLHLPKKKFSDFSMVRKEIENETDSLTGRLKQISPVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVQDIETMVRTYVEKPNCIILAITPANQDIATSDAIKLSREVDPTGMTFGVLTKLDLMDKGTNALENIDMITARRREREFFASSVDYRHLAGTMGSEYLAKLLSKHLESLIKTRIPGIASLIDKSIDEIEAELNQLGKPVAIDSGAQLYTILELCRAFDLVFKEHLHGGRPGGDRIYNVFDNQLPHALRRLPFDRYLSLQNVRKVISEADGYQPHLIAPEHGYRRLIEGAVNYFRGPAEASVDAVHSILKELVRRAMAETEELKRFPTLQAEVSRAANEALERFREDSKKTTLRLVDMESSYLTVDFFRKLPEEDEKGGTPPAAASTDRYTEAHFHRIASNISSYIRMVSETLRNTIPKSVVHCQVREAKRSILDYFYVQLGQMEGNQLAALLDEDPALVETRQQCAKRLELHKSARDEIDSVSWCISSLNF 636
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 14179931 14187926 - ClCG09G012390.1 Cla09g01176 280596

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g01176 636 PANTHER DYNAMIN 270 630 IPR022812 -
Cla09g01176 636 CDD DLP_1 81 320 IPR001401 GO:0003924|GO:0005525
Cla09g01176 636 PANTHER DYNAMIN 48 270 IPR022812 -
Cla09g01176 636 Gene3D Dynamin, middle domain 358 607 - -
Cla09g01176 636 PANTHER DYNAMIN-LIKE PROTEIN 1E 48 270 - -
Cla09g01176 636 PANTHER DYNAMIN-LIKE PROTEIN 1E 270 630 - -
Cla09g01176 636 SMART GED_2 534 627 IPR003130 GO:0003924|GO:0005525
Cla09g01176 636 Pfam Dynamin family 84 258 IPR045063 -
Cla09g01176 636 PRINTS Dynamin signature 179 196 IPR022812 -
Cla09g01176 636 PRINTS Dynamin signature 229 247 IPR022812 -
Cla09g01176 636 PRINTS Dynamin signature 106 123 IPR022812 -
Cla09g01176 636 PRINTS Dynamin signature 81 99 IPR022812 -
Cla09g01176 636 Pfam Dynamin central region 271 508 IPR000375 -
Cla09g01176 636 ProSiteProfiles GED domain profile. 539 632 IPR020850 -
Cla09g01176 636 ProSitePatterns Dynamin-type guanine nucleotide-binding (G) domain signature. 107 116 IPR019762 -
Cla09g01176 636 Gene3D - 48 357 IPR027417 -
Cla09g01176 636 SMART dynamin_3 48 287 IPR001401 GO:0003924|GO:0005525
Cla09g01176 636 Pfam Dynamin GTPase effector domain 535 627 IPR003130 GO:0003924|GO:0005525
Cla09g01176 636 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 78 343 IPR030381 GO:0005525
Cla09g01176 636 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 76 328 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g01176 - - - csv:101208260 1092.8
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00644 Cla-Chr1:7418943 Cla09g01176 Cla-Chr9:14179931 0 dispersed
Cla07g01094 Cla-Chr7:27634422 Cla09g01176 Cla-Chr9:14179931 5.29E-117 dispersed
Cla09g01176 Cla-Chr9:14179931 Cla09g01588 Cla-Chr9:31724553 4.29E-80 dispersed
Cla03g00688 Cla-Chr3:8339924 Cla09g01176 Cla-Chr9:14179931 1.43E-36 transposed
Cla09g01318 Cla-Chr9:20747290 Cla09g01176 Cla-Chr9:14179931 4.69E-11 transposed
Cla11g00950 Cla-Chr11:16763257 Cla09g01176 Cla-Chr9:14179931 2.46E-31 transposed
Cla11g01759 Cla-Chr11:31209011 Cla09g01176 Cla-Chr9:14179931 4.77E-18 transposed
Cla05g00294 Cla-Chr5:2702304 Cla09g01176 Cla-Chr9:14179931 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g621 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone12ag0438 . . . . Chy04g00050 . . . . . . . Bma05g00717 . . . Cmo19g00502 . . . . . . Bhi05g00520 . . . . . . Cla09g01176 Cam09g1241 Cec09g1257 Cco09g1287 . . Cre09g1205 . Csa03g04650 . Cme04g00064
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000261 5 7 3 6 5 5 6 5 5 5 4 4 4 6 5 6 4 8 5 5 5 5 5 5 5 4 4 8 5 5 154
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla09g01176 Cla_Chr09 FPKM 0.0 0.322734 0.0 0.0 0.0 0.0 0.187651 0.0 0.130143 0.137116