Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g01190 ATGAGAATGAATATTGAATTGACTATTAACAGGTATCTTGGAAATTATGTACGAGGACTCAACAAGGAGGCTCTGAAGATCAGTGTATGGCAAGGTGATGTTGAGCTAACAAATATGCAGCTGAAGCCAGAGGCACTCAATGCATTGAAGTTGCCAGTGAAAGTTAAAGCCGGATTTCTTGGATCAGTCAAAATTAAGGTTCCATGGAGCAGACTTGGTCAAGATCCTGTCATAGTGTATTTAGATCGAATTTTCTTATTAGCTGAGCCTGCTATGGAGGTTGAAGGACATAGTGAAGATGGTATCCAAGAGGTCAAGAAAACTAGAGTTCGTGAAATGGAAATCAAACTATTGGAGAGGATGCAGCGAACAAAGACAGAAACGAATAATTCGTGGTTGGGATCACTGATCAGCACAATAATTGGAAATTTAAAGCTTTCGATATCAAATATTCACATCAGATATGAGGATATTGAAAGCAATCCTGGACATCCATTTGCAGCGGGTGTAAGTTTAGAAAAACTTTCAGCTGTTACAGTAGATGATGATGGGAAGGAGACTTTTATAACTGGTGGTGCACTTGATCGAATACTGAAGCCTTCTCCGTTTGTCCCTGTCGATCAAGCCTCTCCCTGGATTGGATTTTCCCCGACTTCAAGCCTCTTCTTTAATCATCCTTCACTCATGGAATTTGTTAGCTGTAAGGTCACAGAACTGCTCAGCGGGTCTAGCACTCGTTTTTTCTTAAGGGATATGATAGATGCATCTGGAGAAATGAGATTATCAAAGTTCAAAAAAGATATGGGTTGGAACTTAAGATGCGTAGTTTGGCCAGCTTCGGGAGGACGTTTCTTCATTCATATTCTTGAGGGGCCTATGCAACAAGGGTGGGCAGAATTTCTGGGAATGCTTAATAATTTCATTAAAAGAAGTGGGAGATCAAAAATGAAGCCTGCAAAGAAGCCTGAAAGGAGTATGAAGCCTCAGGGGGTTGTCTCCACCTGTGATAGGCAGCGGCTGAGCTATGCAGAGATGTTAATGAAACTATGGAAGGAGCAAATCAGTCCCCTGTTATGGCTACACTAA 1086 41.44 MRMNIELTINRYLGNYVRGLNKEALKISVWQGDVELTNMQLKPEALNALKLPVKVKAGFLGSVKIKVPWSRLGQDPVIVYLDRIFLLAEPAMEVEGHSEDGIQEVKKTRVREMEIKLLERMQRTKTETNNSWLGSLISTIIGNLKLSISNIHIRYEDIESNPGHPFAAGVSLEKLSAVTVDDDGKETFITGGALDRILKPSPFVPVDQASPWIGFSPTSSLFFNHPSLMEFVSCKVTELLSGSSTRFFLRDMIDASGEMRLSKFKKDMGWNLRCVVWPASGGRFFIHILEGPMQQGWAEFLGMLNNFIKRSGRSKMKPAKKPERSMKPQGVVSTCDRQRLSYAEMLMKLWKEQISPLLWLH 361
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 14737591 14749316 + ClCG09G012500.2 Cla09g01190 280610

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g01190 361 Pfam N-terminal region of Chorein or VPS13 8 101 IPR026854 -
Cla09g01190 361 PANTHER - 65 199 - -
Cla09g01190 361 Pfam Vacuolar sorting-associated protein 13, N-terminal 132 191 IPR031646 -
Cla09g01190 361 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN-RELATED 65 199 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g01190 K19525 VPS13A_C; vacuolar protein sorting-associated protein 13A/C - csv:101212417 369.007
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla09g01190 Cla-Chr9:14737591 Cla04g00352 Cla-Chr4:13059006 2.30E-34 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g580 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo03g00822 . . . . . . . . . Cmo19g00389 . . . . . . . . . . . . . Cla09g01190 Cam09g1256 Cec09g1271 . . . Cre09g1218 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015104 0 0 0 0 0 3 1 1 2 0 1 0 0 0 0 1 2 0 0 1 0 0 0 0 3 0 0 0 0 0 15
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla09g01190 Cla_Chr09 FPKM 35.709549 40.345909 19.024199 18.824837 24.909609 27.089964 23.890291 9.303216 9.838696 9.460201