Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g01200 ATGGTGGACTATAGTTTGCCGGTATCGAAGAGAACCAGGCTGAGGCGAGCAATGGCCGGAATGGAGGATTTGGAGCAGAGGAAGAAGAGGAGGAAGAAGAGCAGGACGGATTCCTCCAGTGACAATGTTCGAGGTCAGGCTTCGAGCGGTAAGAGGGTTAATGATTTTGAACATTCTAGTGTTAATCGTACAATGGAGGTGAATCCTGTTCGTTTATATGATGATAGTGAGGGAGATAGTTTAGAGGAGATTGATGCGGTAGCATTTGGTAGAGAAGGTGGGGATTCGGTCACATTTGTAGGTTCTGAGAGTTCGGGGCTAAAGAATGTGAAAGAATGTAGTACGAAGGGGTTTCAGAAAGGGAATATTGATTTAATTGATTTAGAAAATGAAGTGATTTTGTCAGATGATGAGGAGGGTTTTGGTTTTGATTCTGTAAATTCCATGTGTTCAATTTCTAAGTCTGCTACTGCCGCTGCCTCCAAGGATGGGGGTTTTGTTAGCTTTGATTTGGACAATGAGGACGATAGTAGTGGCTTGCTCTCTTCTGGCAAGGGTAAAGATACTTTTGAGATATCTCCTGATAAAAGCACTGGGGGAAGTGATTGCTTGAACTCTAATGGTTGCGAGAGTGGTGGTTACTCATACAAGACTGAGCCCACGTGTAGTTCTGATGAAGCTGTAGATGATTCCACTGAATTGGGGGCATCATCAAGTGAAGAGGAGTTTGATGACTCCAGTGATAGAAATTACGAATTAGAAGAATCAGACGGGGCAATTTCAGAGTCCTCTAGTTCAGAAGATGGGAAAAGCAATGGAAGTTACTGTGCAGAAGTAAGAAATAAAAGGGAGAGGAAGGAAAGAAGGAAAGGTGGAAATTTGATTGAAGGTGGACTAAGGAGGAGGAAAGCGTATGGCTTAGACATATTGGTTGATTTTGACAAGGACGGAAATAACAAAAATGTTAAGGTTGGTGAACAAGTTAACTGTATTGCACGAAGAACTCGTTCACGCTTTGGTTTTAGGGTCAGGAAAATAAATACTGATCTTGGAACTGTCAGTCAGCCACTCTGTATTGATGAGGAAGGGTCAGAGTTTCAGTGTGATGAAAAAGAATTAGATTCTTCATCAAGGCATGACAGTGGAGATTCTTGTGATAGTGATAGTACTACTGATGATGAAGTTTACAAGCCATGGGCCTGGAGTAGTAGTAAAAAGAGAACTCAGTTCAACAATCAAAGTGATGATGATTTCTCATCGGAAAAAAAAGATGATGATACAAACAAGGTTGAGAGTTTTCATGTGGGGAGTAAACTTTGGAATAGTAAAAGTTCACCTGAAACTAATCAACACCACCAGAGTGAAGATTTCCCGAAGGTTCGTCCAAAGAATGGCCACGAGTTTCATGATGTTATTAAAACAAAAGGCCGCAGTACTCCAAGAGGTATTGATGTTTTCAATATTCTTATAGATTCCATAATTGCGGACAAAGAACTGCCTTCAGATGAGTTAGATCCTCCTACAAGTCAAGTCTCCCAAATGCCTCTTCCTTTGAAGTTTGGATTGATGGAACCACCTCTTCCAGAGAAGTCAGAGGAAGAAAAAGAATTGGATAAACTCTGGGCAGAGCTTGACTTTGCTCTCAGATCCAGCGAGATCGGGCTGGTGGATTCTAATACAGTTGAACACGAAGATGCTTTTCCTTCAAAGCTTGAGCAAGTAGATCTGTGTCTTCGCGGTGATCATCAGCTCATACTTGATGAACAAATTGGACTTAGATGCAGATGCTGTTCATATGTCCAATTGGAAATCAGAGATATTGTACCGTCTTTTGATACAAATCCACATGGAAAGTCACAGAAGAGGGAATCTGGCTCATTTGAGAATGTTAAATATGATGACCTTCAAGAGGATTTTGATTGTGACCACCGTGATGGATCTGATTCACGATCTCATTTTGGACGCACAGTGTGGGATATCATTCCTGGTATAAGGAATAGCATGTACCCACACCAGCGTGAAGGCTTTGAATTTATTTGGAAAAATATAGCCGGAGGAATTTATCTTGATGAGTTGAGAGATAAAAACAGCTTAAACAATGGGAGTGGATGCATTGTATCACATGCTCCTGGAACAGGAAAAACGCGTCTAACAATTAATTTTCTTCAGACATACATGGAATTAAATCCAACATGCCGTCCAATGATTATTGCACCTAGCAGCATGCTCCTTACCTGGGAAGAGGAGTTTTTGAAGTGGAATGTTGGCATTCCCTTTCATAACCTGAATAAGCGAGATTTCTCTTTCGAGGAGAATATTTCAGCCCTTAAGTTCTTGATGCAAGCTTCTCCATCAGGACAAAATGTGGACAACATACGGCTTGTAAAACTGTTTTCCTGGAAAAAGGAGAAAAGCATCTTGGGAGTTAGTTACAGATTGTTTGAAAGATTAGCCGGAGTTCGGAAGAATTCTAAATGTGATAAAGTAAGGAATGTCCTTTTGGAGCTCCCTGATCTTGTGGTCTTTGATGAAGGGCACATTCCACGCAACGATGATAGTCTTATTTGGATGGCTTTGTCTAAAATTAAAACAGAAAGGCGCATTATCCTCTCTGGAACTCCATTCCAGAACAATTTTACTGAATTTTACAATACACTTCGGTTGGTGAGGCCAAACTTTGCAGATGAAAGTAATTCTGGAGGCGATGAATGCATGGATAAGAAGCGTGGACGACCAAAAAATATCTCAAGAGGAAAGTGGGACCTTTTGATTAGTTCCATTGGCAGAACTTCTGAACTGGAAAGTGCTGAATTGAAAGAAATCAGAGCCTTGATCAATCCATTTGTGCATGTGTACAGGGGCAGCATACTACAGGAGAAACTTCCAGGGTTGAGGAAATCTACAGTTATATTATGGCCAGCAGAGCTGCAGAAGAGTTTTCTTGAGAGAATTCAAGCAAGGAAGCATTCTTTTGAAGTGGAATATGTTGAGTCCTTGATCTCCGTACACCCTTCTTTGATACTGAAATGTGATAAAGGAGATTGTGAGGTTGACAAGGATATGTTAGAGAGGTTTAGGTTGAATCCTGAACTTGGAGTGAAACTACAGTTTCTCCTGGAAATTATACGTCTCAGTGAAGCTTTGAATGAAAAAGTTTTGGTTTTCAGCCAATATATTGAACCATTATCCTTTATAGAAGAGCATCTTAAGTTTCATTTTAAATGGACTGAAGGGATAGAGTTGTTTCATATGGATGGAAAACGTGAGATAAAGAAACGACAAGCATTAATAAATACCTTTAATGATCCAACAAGTGAAGTTAGGGTATTGCTTGCATCTACAAAGGCTTGCTCGGAAGGTATAAACCTTATTGGGGCTTCAAGGGTAGTTTTACTTGATGTTGTATGGAATCCCTCGGTGGAAAGGCAAGCCATATGCCGAGCGTATAGACTCGGGCAGAAGAAGGTTGTTTATGTCTATCATCTCATTACCTCTGGGACAAGGGAAGAAGAGAAATACAGTCGACAAGTGGAAAAAGATCGATTGTCTCAGTTAGTTTTTTCTTCTGAACAGAACAGTAATGAAATCAAAGTATCATCCACAGATCTAGATGACAGAATTTTGGAAGCTGTACTTCAACATGAAAAGCTTAAAAAGATATTCCTAAAGATAATATACCAATCAAAGGAGTCCTGCATGAATGAGAATTTTGGCTTGGCAGACAAGGAGTGA 3732 40.38 MVDYSLPVSKRTRLRRAMAGMEDLEQRKKRRKKSRTDSSSDNVRGQASSGKRVNDFEHSSVNRTMEVNPVRLYDDSEGDSLEEIDAVAFGREGGDSVTFVGSESSGLKNVKECSTKGFQKGNIDLIDLENEVILSDDEEGFGFDSVNSMCSISKSATAAASKDGGFVSFDLDNEDDSSGLLSSGKGKDTFEISPDKSTGGSDCLNSNGCESGGYSYKTEPTCSSDEAVDDSTELGASSSEEEFDDSSDRNYELEESDGAISESSSSEDGKSNGSYCAEVRNKRERKERRKGGNLIEGGLRRRKAYGLDILVDFDKDGNNKNVKVGEQVNCIARRTRSRFGFRVRKINTDLGTVSQPLCIDEEGSEFQCDEKELDSSSRHDSGDSCDSDSTTDDEVYKPWAWSSSKKRTQFNNQSDDDFSSEKKDDDTNKVESFHVGSKLWNSKSSPETNQHHQSEDFPKVRPKNGHEFHDVIKTKGRSTPRGIDVFNILIDSIIADKELPSDELDPPTSQVSQMPLPLKFGLMEPPLPEKSEEEKELDKLWAELDFALRSSEIGLVDSNTVEHEDAFPSKLEQVDLCLRGDHQLILDEQIGLRCRCCSYVQLEIRDIVPSFDTNPHGKSQKRESGSFENVKYDDLQEDFDCDHRDGSDSRSHFGRTVWDIIPGIRNSMYPHQREGFEFIWKNIAGGIYLDELRDKNSLNNGSGCIVSHAPGTGKTRLTINFLQTYMELNPTCRPMIIAPSSMLLTWEEEFLKWNVGIPFHNLNKRDFSFEENISALKFLMQASPSGQNVDNIRLVKLFSWKKEKSILGVSYRLFERLAGVRKNSKCDKVRNVLLELPDLVVFDEGHIPRNDDSLIWMALSKIKTERRIILSGTPFQNNFTEFYNTLRLVRPNFADESNSGGDECMDKKRGRPKNISRGKWDLLISSIGRTSELESAELKEIRALINPFVHVYRGSILQEKLPGLRKSTVILWPAELQKSFLERIQARKHSFEVEYVESLISVHPSLILKCDKGDCEVDKDMLERFRLNPELGVKLQFLLEIIRLSEALNEKVLVFSQYIEPLSFIEEHLKFHFKWTEGIELFHMDGKREIKKRQALINTFNDPTSEVRVLLASTKACSEGINLIGASRVVLLDVVWNPSVERQAICRAYRLGQKKVVYVYHLITSGTREEEKYSRQVEKDRLSQLVFSSEQNSNEIKVSSTDLDDRILEAVLQHEKLKKIFLKIIYQSKESCMNENFGLADKE 1243
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 14964704 14969730 + ClCG09G012590.1 Cla09g01200 280620

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g01200 1243 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 4 4 1238 - -
Cla09g01200 1243 MobiDBLite consensus disorder prediction 369 394 - -
Cla09g01200 1243 Pfam Helicase conserved C-terminal domain 1034 1152 IPR001650 -
Cla09g01200 1243 MobiDBLite consensus disorder prediction 449 465 - -
Cla09g01200 1243 SMART ultradead3 664 918 IPR014001 -
Cla09g01200 1243 MobiDBLite consensus disorder prediction 177 204 - -
Cla09g01200 1243 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 695 892 IPR014001 -
Cla09g01200 1243 MobiDBLite consensus disorder prediction 434 448 - -
Cla09g01200 1243 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 4 1238 IPR044567 GO:0080188
Cla09g01200 1243 MobiDBLite consensus disorder prediction 15 39 - -
Cla09g01200 1243 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1040 1204 IPR001650 -
Cla09g01200 1243 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 634 895 IPR027417 -
Cla09g01200 1243 Pfam SNF2-related domain 699 984 IPR000330 GO:0005524|GO:0140658
Cla09g01200 1243 MobiDBLite consensus disorder prediction 1 61 - -
Cla09g01200 1243 SMART helicmild6 1063 1152 IPR001650 -
Cla09g01200 1243 MobiDBLite consensus disorder prediction 218 289 - -
Cla09g01200 1243 Gene3D - 645 922 IPR038718 -
Cla09g01200 1243 MobiDBLite consensus disorder prediction 40 61 - -
Cla09g01200 1243 MobiDBLite consensus disorder prediction 218 234 - -
Cla09g01200 1243 CDD SF2_C_SNF 1031 1163 - -
Cla09g01200 1243 Gene3D - 967 1234 IPR027417 -
Cla09g01200 1243 MobiDBLite consensus disorder prediction 235 251 - -
Cla09g01200 1243 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 838 1191 IPR027417 -
Cla09g01200 1243 MobiDBLite consensus disorder prediction 257 272 - -
Cla09g01200 1243 MobiDBLite consensus disorder prediction 369 393 - -
Cla09g01200 1243 MobiDBLite consensus disorder prediction 406 465 - -
Cla09g01200 1243 MobiDBLite consensus disorder prediction 410 432 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g01200 K10875 RAD54L, RAD54; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-] - csv:105435045 1954.1
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g00438 Cla-Chr7:5944276 Cla09g01200 Cla-Chr9:14964704 8.37E-110 dispersed
Cla09g01200 Cla-Chr9:14964704 Cla11g00387 Cla-Chr11:4341124 3.15E-84 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g573 . . . . . . . . . . Cma02g01579 . Car02g01343 . . . Cpe05g00211 . . . . . . . . . . . . . . Cone8ag0437 Cone12ag0422 . . . . Chy04g00035 . . . Bda07g00129 Bda09g00688 Bpe08g00872 Bpe11g00360 . . Sed01g4061 Cmo02g01621 Cmo19g00395 . . . . . . Bhi05g00566 Tan07g1908 Cmetu04g1824 Lac11g2350 Hepe06g1725 . . Cla09g01200 Cam09g1268 Cec09g1282 Cco09g1316 . . Cre09g1228 . Csa03g04668 . Cme04g00044
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005251 3 2 0 2 2 1 1 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 3 1 1 1 2 1 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61746 PF00176 SNF2_N 1.20E-19 CL0023 Cla TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla09g01200 Cla_Chr09 FPKM 4.959307 4.394763 4.072539 4.579803 2.567401 3.595372 3.22891 6.421121 5.924805 4.830444