Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g01215 ATGGAGCTCTCACTTAAATGTGGCTTTTTTGGCTGCCTCTTGCTTGTGCTCTTGCCTGTGCTGTGCTTCTCTCAAGACAATTTTGTTTACTCCAGAGCCACTTATTATGGCAGCCCTGATTGCTATGGAACACCATCTGGGGCCTGTGGATTTGGTGAATTTGGAAGAACTGTGAATGATGGCAATGTTGCTGCAGTCTCCTATCTCTATAGAAATGGTTCTGGTTGTGGTGCATGTTACCAGGTTAGGTGCACCAATCCAAAATATTGTAGTGGTAGTGGAGCCTTTGTAGTGGTGACAGACCATGGTGAAGGTGATTACACTGACTTTATATTGAGCCCAAAAGCGTATGCGAAAATGGCTCATCCAAACACAGCCTTAGAATTGTTCTCATATGGTGTTGTTGATGTTGAATTCAGAAGGGTTTCTTGCCAATACCCTAATTACAATACTCTCAAATTCAAGGTTCATGACAATAGTAGATACCCTGATTATTTGGCCATTCTTATCATTTATGTTGCTGGCAAAAATGATATCACTGCTGTTGAGTTGTGGCAGGAGGATTGCAAAGAATGGAAGGGGATGAGGAGATCCCATGGAGCTGTTTGGGATATGGCAAATCCTCCTAAAGGAGACATAAAATTGAGGTTTCAAGTGAGTGGAAGTATGGGATATGGAAGGTGGGTGGTTGCAAACAATGCTCTCCCAAGCTATTGGAAGGCAGGAGTTGCTTATGACACTGACATTAACCTCTATTAA 759 42.69 MELSLKCGFFGCLLLVLLPVLCFSQDNFVYSRATYYGSPDCYGTPSGACGFGEFGRTVNDGNVAAVSYLYRNGSGCGACYQVRCTNPKYCSGSGAFVVVTDHGEGDYTDFILSPKAYAKMAHPNTALELFSYGVVDVEFRRVSCQYPNYNTLKFKVHDNSRYPDYLAILIIYVAGKNDITAVELWQEDCKEWKGMRRSHGAVWDMANPPKGDIKLRFQVSGSMGYGRWVVANNALPSYWKAGVAYDTDINLY 252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 15423308 15427603 - ClCG09G012750.1 Cla09g01215 280635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g01215 252 Gene3D - 145 248 IPR036749 -
Cla09g01215 252 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 46 149 IPR007112 -
Cla09g01215 252 Gene3D - 21 144 IPR036908 -
Cla09g01215 252 Pfam Lytic transglycolase 66 138 IPR009009 -
Cla09g01215 252 PANTHER EXPANSIN-B3 13 251 - -
Cla09g01215 252 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 164 247 IPR007117 -
Cla09g01215 252 PANTHER EXPANSIN-LIKE B1 13 251 - -
Cla09g01215 252 SUPERFAMILY PHL pollen allergen 151 246 IPR036749 -
Cla09g01215 252 Pfam Expansin C-terminal domain 153 236 IPR007117 -
Cla09g01215 252 PRINTS Expansin/Lol pI family signature 27 42 IPR007118 GO:0005576
Cla09g01215 252 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576
Cla09g01215 252 PRINTS Expansin/Lol pI family signature 132 148 IPR007118 GO:0005576
Cla09g01215 252 PRINTS Expansin/Lol pI family signature 192 206 IPR007118 GO:0005576
Cla09g01215 252 PRINTS Expansin/Lol pI family signature 233 247 IPR007118 GO:0005576
Cla09g01215 252 SUPERFAMILY Barwin-like endoglucanases 13 148 IPR036908 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g01181 Cla-Chr3:24987389 Cla09g01215 Cla-Chr9:15423308 3.93E-47 dispersed
Cla09g01175 Cla-Chr9:14172897 Cla09g01215 Cla-Chr9:15423308 6.43E-65 dispersed
Cla09g01215 Cla-Chr9:15423308 Cla07g00284 Cla-Chr7:3123320 1.73E-29 dispersed
Cla09g01215 Cla-Chr9:15423308 Cla02g01720 Cla-Chr2:32085352 1.95E-33 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g01215 - - csv:101215548 484.182