Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g01216 ATGGTGGAACTTCGAAGGATGAAGGTGAATGGAAATGTAAGGTCGAAACTTGAGAAGGATGGAGGAAGACCTAAGCACAAGATTGCTACTCTAGAGCGTCACAATGCTCTTGAGATAAAGGAACAAGGTAGTGTGGGTCGATGCTTGAAGACCAAGGTAACGCATGGTATGGGTGGACACATGGAAGTAAACCAAGAAGGGAAAGAAGTGAAATGCATAAGAGAAGATGTACGCATTGGTGATGGTAAGACGCTTAAGCAAGAAAGGAAAGAAGTTATGTCGTGGAATGTTAAACGAGATCTAAGTCTCGGAAAGAACTTTGAGGGAAAAGGAGCGACTGATGACTCTGAAAGAAGAATTCTGAAGAGAAAGGGAAGAAAGAAGGCAAAAAGAAGGAATCCTTACGTCTGTAGTAGGAGTCTGCGGCCAAGAAAGAAGGTGATGCGTTCAAGTTGGACCTTGCGTCCAAGAGAGGTCAACGCATCCAAAAAGAGAAGTAAGAAGAGTTGGGCTGCACTTTGCAGAAGTAATCAACCTTGCGTTGAAGAGCAGGGTAGCATGACAGTTCCCGTTGCCGATCGAAGTCGAGGTTTGTCAAGAGCATGTTATTGGTATTACCGTCCTAAGAAGGATTTAAAAGAAAATAAGATGAAGTTGACAGTGGGTTATGTGACAAGAGAGCACCAAAAGGGAGAGCACTGTGGTGTTGTCCTGTGGTGCCGCATCGCTCTTAAGTTTGATGGAAGATATGTGCGAACGGGAGCACTGCAACATCGTCTAGGCGCTGGGTGCGACACTCCGATTCGAGGAGAAGCCTCTTTTTGTAACCCAGGAAAAAGAACACACAAAAAAGGGGGAAAAGAGGGTGATATGGGAAAGCATGGGCCTTGCTGTCACTGTGGAGTTACAAGCACTCCTCTTTGGCGTAATGGGCCTCCTGATAAACCAGTACTATGTAATGCCTGTGGATCCCGATGGAGGACCAAAGGAACCCTTGCAAACTATACCCCTTTGCATGCTCGGGCCGATCCCGATGAATATGAAGATCACAGGGTTTCCAGGGTGAAGAATATTTCAATAAATAAAAACAAAGAAGTTAAACTGCTTAAAAGAAAGCTGCAACAAGCCGATGGATCAATTGGGTGGATGATTCCCGACCAAGGTCAGGGTTACCATAGAGTAGTGGATGAAGATACGAGCAATAGATCCAGTTCTGGATCGGCCATATCTAATCCTGAGAGTTGTGCCCATTTCAGCAGTGTGGATGCAAGTGATTTGACAGGTCCAGCTCAGTCAATAGTGTGGGAGTCCATGGTGCCTTCCAGGAAGAGGACCTGTGTAAATCGTCCAAAGCAGTCCCCAGTTGAAAAACTAACTAAAGATCTATATACTATCTTACGTGAGCAGAGATCATCCTACTTCTCCGAAGCGTCCGAGGATGATCTGCTTTTTGAGAGTGAAAAACCTATGGTCTCTGTTGAGATAGGTCATGGAAGCATTCTCATTAGGCATCCAAGTTCGATAGCTCGAGAAGAGGAATCTGAAGCTAGCTCAGTTTCAGTTGATAACAAGCAATTCTTGGTAAATGAGGTCTATTCACCCCATTCTACAACTGTTCTTGTATGTAGTGAAAACAAGGGCATGAATTTTCCAACATCTAGGACTGGAAAGATGAAGAATCCATATGTATCAGGAGTACAGCAAGAACAAATTAAAAGGGACAACTCTCATCACGAATGCTTACAAATTCTTGGAAACCATAACTCGCCCTTATGTGATGTAGATATAAAGGACATTATAAACTTTGGAGAGTTTGCGAGACAACTAACAAATGAAGAACAACAGCAATTAATGAAGTACCTACCGCAGGTTGATATTGCTGAATTTCCCGAGACCCTCAAGAGCTTGTTTGATAGCCCCTATTTCAAGGAGAATTTAACTTCCTTCCAACAACTGCTTAGCGAGGGCGTTTTTGATGTTTCCTTCCTTGGAACAAAGATCGAAGACTGCAAGACTCTTAAAAGGCTTGTATTGTATAATTCTTCAAAATCCAAATGGGTCGAACGCTATCATCAACTGAAGAAAGATAAAAATGGTAGCAAAGGACCTTTTCTTTCCCATGCCAATGCGTCGGTGTCGAGTAACTTCATGAATGTTAAGCAACTGCGAGAGAGCTACAACCAAAATATTTCAGAGGTAAAGACCATCATGAAGAGTCCCAAAAGGTTGGTGATGAAGGAAAATAAGGATCCTGGAGAGAATGATGGGTCTTGCTTCAGTCCTAGAAGCTTATTTGCTTTGCCTCCTGATGGAAGCTCCCTCATGCTTGAATCCTTACATTTCGTGGAAGAAAGTTCAGATCAAGATCTATTGCTAGATGTACGATCGAATAGTTCATTCCCGCAAGCCGAGCTCCTTCACCCGTCCTCTCATTCTGGTGGTAGGCAGGCTAGCACATGTAGTAGCTCAGTTCACCCACATCTTGTTCATCACTAA 2496 43.63 MVELRRMKVNGNVRSKLEKDGGRPKHKIATLERHNALEIKEQGSVGRCLKTKVTHGMGGHMEVNQEGKEVKCIREDVRIGDGKTLKQERKEVMSWNVKRDLSLGKNFEGKGATDDSERRILKRKGRKKAKRRNPYVCSRSLRPRKKVMRSSWTLRPREVNASKKRSKKSWAALCRSNQPCVEEQGSMTVPVADRSRGLSRACYWYYRPKKDLKENKMKLTVGYVTREHQKGEHCGVVLWCRIALKFDGRYVRTGALQHRLGAGCDTPIRGEASFCNPGKRTHKKGGKEGDMGKHGPCCHCGVTSTPLWRNGPPDKPVLCNACGSRWRTKGTLANYTPLHARADPDEYEDHRVSRVKNISINKNKEVKLLKRKLQQADGSIGWMIPDQGQGYHRVVDEDTSNRSSSGSAISNPESCAHFSSVDASDLTGPAQSIVWESMVPSRKRTCVNRPKQSPVEKLTKDLYTILREQRSSYFSEASEDDLLFESEKPMVSVEIGHGSILIRHPSSIAREEESEASSVSVDNKQFLVNEVYSPHSTTVLVCSENKGMNFPTSRTGKMKNPYVSGVQQEQIKRDNSHHECLQILGNHNSPLCDVDIKDIINFGEFARQLTNEEQQQLMKYLPQVDIAEFPETLKSLFDSPYFKENLTSFQQLLSEGVFDVSFLGTKIEDCKTLKRLVLYNSSKSKWVERYHQLKKDKNGSKGPFLSHANASVSSNFMNVKQLRESYNQNISEVKTIMKSPKRLVMKENKDPGENDGSCFSPRSLFALPPDGSSLMLESLHFVEESSDQDLLLDVRSNSSFPQAELLHPSSHSGGRQASTCSSSVHPHLVHH 831
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 15532730 15548912 - ClCG09G012760.2 Cla09g01216 280636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g01216 831 MobiDBLite consensus disorder prediction 106 133 - -
Cla09g01216 831 ProSiteProfiles GATA-type zinc finger domain profile. 297 330 IPR000679 GO:0006355|GO:0043565
Cla09g01216 831 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 587 699 IPR044867 -
Cla09g01216 831 PANTHER GATA TRANSCRIPTION FACTOR 26 291 831 - -
Cla09g01216 831 CDD ZnF_GATA 296 341 IPR000679 GO:0006355|GO:0043565
Cla09g01216 831 Pfam Asx homology domain 577 669 IPR028020 -
Cla09g01216 831 Gene3D - 585 675 IPR038108 -
Cla09g01216 831 MobiDBLite consensus disorder prediction 803 831 - -
Cla09g01216 831 SMART GATA_3 291 345 IPR000679 GO:0006355|GO:0043565
Cla09g01216 831 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 291 335 - -
Cla09g01216 831 Gene3D - 293 374 IPR013088 GO:0006355|GO:0008270
Cla09g01216 831 PANTHER OSJNBB0038F03.10 PROTEIN 291 831 IPR044589 -
Cla09g01216 831 Pfam GATA zinc finger 297 331 IPR000679 GO:0006355|GO:0043565
Cla09g01216 831 MobiDBLite consensus disorder prediction 803 825 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla09g01216 Cla-Chr9:15532730 Cla02g00990 Cla-Chr2:17131599 3.74E-09 dispersed
Cla03g00702 Cla-Chr3:8503815 Cla09g01216 Cla-Chr9:15532730 8.23E-34 transposed
Cla10g00218 Cla-Chr10:2534800 Cla09g01216 Cla-Chr9:15532730 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61747 PF13919 ASXH 3.90E-09 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g01216 - - csv:101215311 1038.1