Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g01216 ATGGTGGAACTTCGAAGGATGAAGGTGAATGGAAATGTAAGGTCGAAACTTGAGAAGGATGGAGGAAGACCTAAGCACAAGATTGCTACTCTAGAGCGTCACAATGCTCTTGAGATAAAGGAACAAGGTAGTGTGGGTCGATGCTTGAAGACCAAGGTAACGCATGGTATGGGTGGACACATGGAAGTAAACCAAGAAGGGAAAGAAGTGAAATGCATAAGAGAAGATGTACGCATTGGTGATGGTAAGACGCTTAAGCAAGAAAGGAAAGAAGTTATGTCGTGGAATGTTAAACGAGATCTAAGTCTCGGAAAGAACTTTGAGGGAAAAGGAGCGACTGATGACTCTGAAAGAAGAATTCTGAAGAGAAAGGGAAGAAAGAAGGCAAAAAGAAGGAATCCTTACGTCTGTAGTAGGAGTCTGCGGCCAAGAAAGAAGGTGATGCGTTCAAGTTGGACCTTGCGTCCAAGAGAGGTCAACGCATCCAAAAAGAGAAGTAAGAAGAGTTGGGCTGCACTTTGCAGAAGTAATCAACCTTGCGTTGAAGAGCAGGGTAGCATGACAGTTCCCGTTGCCGATCGAAGTCGAGGTTTGTCAAGAGCATGTTATTGGTATTACCGTCCTAAGAAGGATTTAAAAGAAAATAAGATGAAGTTGACAGTGGGTTATGTGACAAGAGAGCACCAAAAGGGAGAGCACTGTGGTGTTGTCCTGTGGTGCCGCATCGCTCTTAAGTTTGATGGAAGATATGTGCGAACGGGAGCACTGCAACATCGTCTAGGCGCTGGGTGCGACACTCCGATTCGAGGAGAAGCCTCTTTTTGTAACCCAGGAAAAAGAACACACAAAAAAGGGGGAAAAGAGGGTGATATGGGAAAGCATGGGCCTTGCTGTCACTGTGGAGTTACAAGCACTCCTCTTTGGCGTAATGGGCCTCCTGATAAACCAGTACTATGTAATGCCTGTGGATCCCGATGGAGGACCAAAGGAACCCTTGCAAACTATACCCCTTTGCATGCTCGGGCCGATCCCGATGAATATGAAGATCACAGGGTTTCCAGGGTGAAGAATATTTCAATAAATAAAAACAAAGAAGTTAAACTGCTTAAAAGAAAGCTGCAACAAGCCGATGGATCAATTGGGTGGATGATTCCCGACCAAGGTCAGGGTTACCATAGAGTAGTGGATGAAGATACGAGCAATAGATCCAGTTCTGGATCGGCCATATCTAATCCTGAGAGTTGTGCCCATTTCAGCAGTGTGGATGCAAGTGATTTGACAGGTCCAGCTCAGTCAATAGTGTGGGAGTCCATGGTGCCTTCCAGGAAGAGGACCTGTGTAAATCGTCCAAAGCAGTCCCCAGTTGAAAAACTAACTAAAGATCTATATACTATCTTACGTGAGCAGAGATCATCCTACTTCTCCGAAGCGTCCGAGGATGATCTGCTTTTTGAGAGTGAAAAACCTATGGTCTCTGTTGAGATAGGTCATGGAAGCATTCTCATTAGGCATCCAAGTTCGATAGCTCGAGAAGAGGAATCTGAAGCTAGCTCAGTTTCAGTTGATAACAAGCAATTCTTGGTAAATGAGGTCTATTCACCCCATTCTACAACTGTTCTTGTATGTAGTGAAAACAAGGGCATGAATTTTCCAACATCTAGGACTGGAAAGATGAAGAATCCATATGTATCAGGAGTACAGCAAGAACAAATTAAAAGGGACAACTCTCATCACGAATGCTTACAAATTCTTGGAAACCATAACTCGCCCTTATGTGATGTAGATATAAAGGACATTATAAACTTTGGAGAGTTTGCGAGACAACTAACAAATGAAGAACAACAGCAATTAATGAAGTACCTACCGCAGGTTGATATTGCTGAATTTCCCGAGACCCTCAAGAGCTTGTTTGATAGCCCCTATTTCAAGGAGAATTTAACTTCCTTCCAACAACTGCTTAGCGAGGGCGTTTTTGATGTTTCCTTCCTTGGAACAAAGATCGAAGACTGCAAGACTCTTAAAAGGCTTGTATTGTATAATTCTTCAAAATCCAAATGGGTCGAACGCTATCATCAACTGAAGAAAGATAAAAATGGTAGCAAAGGACCTTTTCTTTCCCATGCCAATGCGTCGGTGTCGAGTAACTTCATGAATGTTAAGCAACTGCGAGAGAGCTACAACCAAAATATTTCAGAGGTAAAGACCATCATGAAGAGTCCCAAAAGGTTGGTGATGAAGGAAAATAAGGATCCTGGAGAGAATGATGGGTCTTGCTTCAGTCCTAGAAGCTTATTTGCTTTGCCTCCTGATGGAAGCTCCCTCATGCTTGAATCCTTACATTTCGTGGAAGAAAGTTCAGATCAAGATCTATTGCTAGATGTACGATCGAATAGTTCATTCCCGCAAGCCGAGCTCCTTCACCCGTCCTCTCATTCTGGTGGTAGGCAGGCTAGCACATGTAGTAGCTCAGTTCACCCACATCTTGTTCATCACTAA 2496 43.63 MVELRRMKVNGNVRSKLEKDGGRPKHKIATLERHNALEIKEQGSVGRCLKTKVTHGMGGHMEVNQEGKEVKCIREDVRIGDGKTLKQERKEVMSWNVKRDLSLGKNFEGKGATDDSERRILKRKGRKKAKRRNPYVCSRSLRPRKKVMRSSWTLRPREVNASKKRSKKSWAALCRSNQPCVEEQGSMTVPVADRSRGLSRACYWYYRPKKDLKENKMKLTVGYVTREHQKGEHCGVVLWCRIALKFDGRYVRTGALQHRLGAGCDTPIRGEASFCNPGKRTHKKGGKEGDMGKHGPCCHCGVTSTPLWRNGPPDKPVLCNACGSRWRTKGTLANYTPLHARADPDEYEDHRVSRVKNISINKNKEVKLLKRKLQQADGSIGWMIPDQGQGYHRVVDEDTSNRSSSGSAISNPESCAHFSSVDASDLTGPAQSIVWESMVPSRKRTCVNRPKQSPVEKLTKDLYTILREQRSSYFSEASEDDLLFESEKPMVSVEIGHGSILIRHPSSIAREEESEASSVSVDNKQFLVNEVYSPHSTTVLVCSENKGMNFPTSRTGKMKNPYVSGVQQEQIKRDNSHHECLQILGNHNSPLCDVDIKDIINFGEFARQLTNEEQQQLMKYLPQVDIAEFPETLKSLFDSPYFKENLTSFQQLLSEGVFDVSFLGTKIEDCKTLKRLVLYNSSKSKWVERYHQLKKDKNGSKGPFLSHANASVSSNFMNVKQLRESYNQNISEVKTIMKSPKRLVMKENKDPGENDGSCFSPRSLFALPPDGSSLMLESLHFVEESSDQDLLLDVRSNSSFPQAELLHPSSHSGGRQASTCSSSVHPHLVHH 831
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 15532730 15548912 - ClCG09G012760.2 Cla09g01216 280636

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g01216 831 MobiDBLite consensus disorder prediction 106 133 - -
Cla09g01216 831 ProSiteProfiles GATA-type zinc finger domain profile. 297 330 IPR000679 GO:0006355|GO:0043565
Cla09g01216 831 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 587 699 IPR044867 -
Cla09g01216 831 PANTHER GATA TRANSCRIPTION FACTOR 26 291 831 - -
Cla09g01216 831 CDD ZnF_GATA 296 341 IPR000679 GO:0006355|GO:0043565
Cla09g01216 831 Pfam Asx homology domain 577 669 IPR028020 -
Cla09g01216 831 Gene3D - 585 675 IPR038108 -
Cla09g01216 831 MobiDBLite consensus disorder prediction 803 831 - -
Cla09g01216 831 SMART GATA_3 291 345 IPR000679 GO:0006355|GO:0043565
Cla09g01216 831 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 291 335 - -
Cla09g01216 831 Gene3D - 293 374 IPR013088 GO:0006355|GO:0008270
Cla09g01216 831 PANTHER OSJNBB0038F03.10 PROTEIN 291 831 IPR044589 -
Cla09g01216 831 Pfam GATA zinc finger 297 331 IPR000679 GO:0006355|GO:0043565
Cla09g01216 831 MobiDBLite consensus disorder prediction 803 825 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g01216 - - - csv:101215311 1038.1
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla09g01216 Cla-Chr9:15532730 Cla02g00990 Cla-Chr2:17131599 3.74E-09 dispersed
Cla03g00702 Cla-Chr3:8503815 Cla09g01216 Cla-Chr9:15532730 8.23E-34 transposed
Cla10g00218 Cla-Chr10:2534800 Cla09g01216 Cla-Chr9:15532730 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla08g01209 . 89 355 C2C2-Gata Transcription Factor Family AT5G25830 55.7 8.9e-69 257.7
Cla11g01481 . 40 350 C2C2-Gata Transcription Factor Family AT5G25830 50.2 8.3e-67 251.1
Cla01g01957 . 107 283 C2C2-Gata Transcription Factor Family AT4G36240 50.3 8.7e-42 167.5
Cla09g01216 . 291 807 C2C2-Gata Transcription Factor Family AT4G17570 51.7 1.1e-134 477.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001256 2 2 1 2 3 2 5 2 2 2 2 2 4 2 1 4 2 3 4 2 2 2 2 2 2 2 2 7 3 1 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61747 PF13919 ASXH 3.90E-09 No_clan Cla TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla09g01216 Cla_Chr09 FPKM 0.949841 1.665826 15.013121 16.876062 54.381714 54.526394 54.829369 12.771585 12.196744 12.284768