Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g01236 ATGGACTACGATGCTCAGGGACTCACTACCCCGACGATGCGCATGGTGCTACCACTTGAGAGCACCTTACACGAGAGCATCTTGGTGCTGCTCCTTAGCGTCATAGCGCCATCCCGCCTAGGGTTAAGAGCACCACAACGCTCTTACCAAATAAGCCCTCGGACTATAGCATTATGTCACAATGTCGTTAAGTGTTGTAACGCTCATGAGTGCACATTTGCCTTCGTCAAAGTACCTACTGTCATGGCGATTGCCTTATTGCAGCTCTCAGTTTTTTGTGTTGTCTTTAGCACTGTGGCGCTTTGCTCTCCAGGATATTTTGAGGAAACAGGACGCGGCGGAGAGAGCGGCGGAGAGAGAAGGATGGCACTAGCAGTTAAGGCTTTTCCGTTCACTGTGGTGAGTCACGTGCTGGCAATCGTGGCGCTCATTCTTGTCCTGGTTTGGACCATTCACTTCAGAGGCGGCCTCGCTTGGGAGGCTGTCAATAAGAATCTCATCTTCAACATTCATCCTGTTCTTATGCTACTGGGATTGATCATCATAGGAGGTGAAGCAATAATTAGTTATAAATCACTGCCATTAAGGAAAGAAGTGAAGAAAGTGATTCATTTGGTGCTACACGGCGTCGCATTGGCACTGGGTATTGTGGGGATCATCGCCGCTTTCAAGAACCATAATGAGAGTGGGATCGCTAATCTTTACAGCTTGCATTCTTGGATTGGAATTGGCGTAATTAGCCTTTATGGTCTCCAGTGGGTGTACGGGTTCGTGACATTCTTCTACCCAGGAGGATCCGCAAATCTCCGACGAGCGTCACTCCCATGGCACGTGCTTTTTGGGATTACTATATACATATTGGCCGTCGGCAACTCGGCATTGGGTTTCCTTGAGAAGCTCACATTTCTAGAGAGCTCCGGCCTCGCTAAATACGGCACCGAGGCCTTTCTCGTCAACTTCACCGCCATCACCACCGTCATTTTTGCACTGTTTGTGATTTTGTCTGTTATTTCTCAGCCTTGCGTTCAAGAAGACAACCATGGCGATTATTCTGCGATATGA 1062 48.49 MDYDAQGLTTPTMRMVLPLESTLHESILVLLLSVIAPSRLGLRAPQRSYQISPRTIALCHNVVKCCNAHECTFAFVKVPTVMAIALLQLSVFCVVFSTVALCSPGYFEETGRGGESGGERRMALAVKAFPFTVVSHVLAIVALILVLVWTIHFRGGLAWEAVNKNLIFNIHPVLMLLGLIIIGGEAIISYKSLPLRKEVKKVIHLVLHGVALALGIVGIIAAFKNHNESGIANLYSLHSWIGIGVISLYGLQWVYGFVTFFYPGGSANLRRASLPWHVLFGITIYILAVGNSALGFLEKLTFLESSGLAKYGTEAFLVNFTAITTVIFALFVILSVISQPCVQEDNHGDYSAI 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 16407007 16420775 + ClCG09G012960.2 Cla09g01236 280656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g01236 353 ProSiteProfiles Cytochrome b561 domain profile. 134 337 IPR006593 -
Cla09g01236 353 SMART 561_7 170 296 IPR006593 -
Cla09g01236 353 CDD Cyt_b561_ACYB-1_like 163 304 - -
Cla09g01236 353 PANTHER TRANSMEMBRANE ASCORBATE FERRIREDUCTASE 1 122 353 - -
Cla09g01236 353 Gene3D - 122 346 - -
Cla09g01236 353 Pfam Eukaryotic cytochrome b561 170 302 IPR006593 -
Cla09g01236 353 PANTHER CYTOCHROME B561-RELATED 122 353 IPR043205 GO:0016491
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00658 Cla-Chr1:7705590 Cla09g01236 Cla-Chr9:16407007 9.41E-56 dispersed
Cla05g02337 Cla-Chr5:34960582 Cla09g01236 Cla-Chr9:16407007 4.40E-35 dispersed
Cla07g00653 Cla-Chr7:13644530 Cla09g01236 Cla-Chr9:16407007 2.21E-57 dispersed
Cla09g01236 Cla-Chr9:16407007 Cla11g00506 Cla-Chr11:5738605 4.79E-57 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g01236 K08360 - csv:101209308 385.956